mRNA_H-canaliculatus_M_contigs77204.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs77204.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs77204.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: Peptidase (family M50 n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C5ZKN7_9BACT)

HSP 1 Score: 298 bits (763), Expect = 9.720e-94
Identity = 139/171 (81.29%), Postives = 159/171 (92.98%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            R GRAGVMFFMFAP+AYVDVT+AWKLP+R +R+AIA+GGVYFELICAS+A+W WWWC+G  +G++AAQIFFLAGPATLLVNANPLLRLDGYYV+SDLVDVPNLREQGRRL GG +E R+F M +PKTHL GWRR+F+A+HAAAS+VFQ VWMGGLVIVVSMWAGPLGLLIA
Sbjct:  325 RCGRAGVMFFMFAPMAYVDVTEAWKLPRRTARMAIAMGGVYFELICASLALWVWWWCEGSQVGHVAAQIFFLAGPATLLVNANPLLRLDGYYVLSDLVDVPNLREQGRRLFGGAVERRLFGMIAPKTHLNGWRRSFAAYHAAASVVFQFVWMGGLVIVVSMWAGPLGLLIA 495

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: Peptidase_M50 (domain-containing protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=A0A7W5E0G7_9BACT)

HSP 1 Score: 281 bits (718), Expect = 3.820e-87
Identity = 135/171 (78.95%), Postives = 152/171 (88.89%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            RVGRAGVMFF+FAPLAYVDVTDAWKLP+RRSR+AIALGGVYFELICAS+A+W WW   G  I ++AAQ+FFLAGPATLLVNANPLLRLDGYYVVSDLVD+PNLREQGR+LLGG IE R+F +    +HL+GWR  F+  HAAAS+VFQ VWMGGLVIVVSMWAGPLGLL+A
Sbjct:  325 RVGRAGVMFFLFAPLAYVDVTDAWKLPQRRSRVAIALGGVYFELICASIALWVWWLFPGGVIAHVAAQVFFLAGPATLLVNANPLLRLDGYYVVSDLVDIPNLREQGRKLLGGRIEHRLFGLVPAASHLSGWRSGFATLHAAASIVFQFVWMGGLVIVVSMWAGPLGLLVA 495

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: Peptidase, (M50 family n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1263870 RepID=M5UHB0_9BACT)

HSP 1 Score: 278 bits (711), Expect = 6.250e-86
Identity = 131/171 (76.61%), Postives = 151/171 (88.30%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            RVGRAGVMFFMFAPLAYVDVTDAWKL  R +R+AIALGGVYFELIC S+A W WW   G  + ++AAQ+FFLAGPATLLVNANPLLRLDGYYV+SDLVD+PNLREQGRRLLGG +ES++F + +P +HL+GWRRTF+  HAAAS+VFQ +WMGGLVIVVSMWAGPLGL +A
Sbjct:  350 RVGRAGVMFFMFAPLAYVDVTDAWKLRSRHARVAIALGGVYFELICGSIAFWVWWSFPGGVVAHVAAQVFFLAGPATLLVNANPLLRLDGYYVLSDLVDIPNLREQGRRLLGGYLESKLFGIAAPASHLSGWRRTFAGLHAAASVVFQFIWMGGLVIVVSMWAGPLGLAVA 520

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: Peptidase_M50 (domain-containing protein n=2 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1E7W7_RHOIS)

HSP 1 Score: 254 bits (649), Expect = 2.750e-77
Identity = 116/171 (67.84%), Postives = 147/171 (85.96%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            +VG+AGVMFF+FAPLAYVDVT+AW+LP R+SR +IA+ GVY EL+ ASVA W W W   +++ ++AAQIFF+AGPATLLVNANPLLRLDGYYV+SD  D+PNLREQGR+L GG +++++F M  P   L+GWRR F+A HAAAS+VFQ+VWMGGL++VVSMWAGP+GLL+A
Sbjct:  292 QVGKAGVMFFLFAPLAYVDVTNAWRLPNRQSRASIAMAGVYLELLIASVAYWVWCWHPTEFVAHVAAQIFFIAGPATLLVNANPLLRLDGYYVLSDWTDIPNLREQGRKLFGGWLQTKLFAMHGPSCKLSGWRRGFAACHAAASVVFQMVWMGGLIVVVSMWAGPVGLLVA 462

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: Peptidase_M50 (domain-containing protein n=11 Tax=Rhodopirellula TaxID=265488 RepID=Q7UWZ3_RHOBA)

HSP 1 Score: 252 bits (643), Expect = 2.650e-76
Identity = 116/171 (67.84%), Postives = 146/171 (85.38%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            +VG+AGVMFF+ APLAYVDVT+AW+LP R+SR +IA+ GVY+EL+ AS+A W W W   D+  +LAAQIFF+AGPATLLVNANPLLRLDGYYV+SD  D+PNLREQGR+L GG ++ ++F M+ P   L+GWRR F++ HAAAS+VFQVVWMGGL++VVSMWAGP+GLL+A
Sbjct:  308 QVGKAGVMFFLMAPLAYVDVTNAWRLPNRQSRASIAMAGVYWELLIASIAFWIWCWHPTDFAAHLAAQIFFIAGPATLLVNANPLLRLDGYYVLSDWTDIPNLREQGRKLFGGWLQFKLFAMRGPSCKLSGWRRGFASCHAAASVVFQVVWMGGLIVVVSMWAGPVGLLMA 478

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: site-2 (protease family protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E4996B3)

HSP 1 Score: 251 bits (642), Expect = 2.700e-76
Identity = 119/171 (69.59%), Postives = 145/171 (84.80%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            +VG+AGVMFF+FAPLAYVDV++AW+LP R SR AIA+ GVY+EL+ ASVA W W     D+  ++AAQ+F +AGPATLLVNANPLLRLDGYYV+SD  DVPNLREQGR+L GG ++ ++F M++P   L GWRR F+AWHAAAS+VFQVVWMGGLVIVVSMWAGPLG+L+A
Sbjct:  288 QVGKAGVMFFLFAPLAYVDVSNAWRLPSRFSRAAIAMAGVYWELLIASVAYWVWCAHPSDFSAHIAAQVFLVAGPATLLVNANPLLRLDGYYVLSDWADVPNLREQGRKLFGGWLQRKLFGMRAPSCKLTGWRRPFAAWHAAASVVFQVVWMGGLVIVVSMWAGPLGMLMA 458

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: Peptidase, (M50 family protein n=1 Tax=Rhodopirellula europaea 6C TaxID=1263867 RepID=M2APU5_9BACT)

HSP 1 Score: 251 bits (641), Expect = 3.540e-76
Identity = 116/171 (67.84%), Postives = 145/171 (84.80%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            +VG+AGVMFF+ APLAYVDVT+AW+LP R+SR +IA+ GVY+EL+ ASVA W W W   D+  +LAAQIFF+AGPATLLVNANPLLRLDGYYV+SD  D+PNLREQGR+L GG ++ ++F M+     L+GWRR F+A HAAAS+VFQ+VWMGGL++VVSMWAGP+GLL+A
Sbjct:  284 QVGKAGVMFFLMAPLAYVDVTNAWRLPNRQSRASIAMAGVYWELLIASVAYWIWCWHPSDFAAHLAAQIFFIAGPATLLVNANPLLRLDGYYVLSDWTDIPNLREQGRKLFGGWLQFKLFAMRGDSCKLSGWRRGFAACHAAASIVFQIVWMGGLIVVVSMWAGPVGLLMA 454

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: Peptidase (M50 n=2 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1WCR4_9BACT)

HSP 1 Score: 246 bits (629), Expect = 2.040e-74
Identity = 113/171 (66.08%), Postives = 145/171 (84.80%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            +VG+AG+MFF+ APLAYVDVT+AW+LP R+SR +IA+ GVY EL+ +S+A W W W   +   + AAQIFF+AGPATLLVNANPLLRLDGYYV+SD  D+PNLREQGR+L GG +++++F M+SP + L+GWRR F++ HAAAS+VFQ VWMGGL+IVVSMWAGP+GLL+A
Sbjct:  286 QVGKAGIMFFLLAPLAYVDVTNAWRLPNRQSRASIAMAGVYVELLVSSIAYWIWCWHPSEVAAHWAAQIFFIAGPATLLVNANPLLRLDGYYVLSDWTDIPNLREQGRKLFGGWLQTKLFAMRSPASKLSGWRRGFASCHAAASVVFQCVWMGGLIIVVSMWAGPVGLLMA 456

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: Peptidase (M50 n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A2A2WB12_9BACT)

HSP 1 Score: 222 bits (566), Expect = 1.620e-65
Identity = 104/171 (60.82%), Postives = 133/171 (77.78%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            RVGR G+MFF+FAPLAYVDVTDAWKL +RR R+ IAL GVY EL   + A   WW+C   +  +LAAQ+F +AGPAT+LVNANPLLRLDGYYV+SDL+++PNLR  GR  LG MIE+ +F ++ P++ LAGWR+ F+A+HA  S+VFQ+VWM GLV  ++ WA   G+LIA
Sbjct:  256 RVGRMGIMFFLFAPLAYVDVTDAWKLVRRRDRVQIALAGVYVELAIGATAALLWWFCPVGFTKHLAAQVFLVAGPATILVNANPLLRLDGYYVLSDLLEIPNLRAHGRARLGAMIEALLFRIRMPESPLAGWRKDFAAFHALCSVVFQLVWMSGLVFAIATWAKGFGILIA 426

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BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Match: Peptidase (family M50 n=1 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HUZ9_9BACT)

HSP 1 Score: 222 bits (566), Expect = 1.810e-65
Identity = 106/171 (61.99%), Postives = 131/171 (76.61%), Query Frame = 1

Query:    1 RVGRAGVMFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWCQGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQGRRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVIVVSMWAGPLGLLIA 513
            RVGR G+MFF+FAPLAYVDVTDAWKL +RR R+ IAL GVY EL   +VA   WW+C   +  +LAAQ+F +AGPATLLVNANPLLRLDGYYV+SDL+++PNLR  GR+ LG MIE+ +F +  P++ L GWRR F+  HA  S+VFQ+VWM GLV  V+ WA   G+LIA
Sbjct:  264 RVGRMGIMFFLFAPLAYVDVTDAWKLVRRRDRVQIALAGVYVELAIGAVAALLWWFCPVGFTKHLAAQVFLVAGPATLLVNANPLLRLDGYYVLSDLLEIPNLRAHGRKRLGAMIEALLFRIPMPESPLTGWRRDFAGIHALCSVVFQIVWMSGLVFAVATWAKGFGILIA 434

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs77204.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Peptidase	9.720e-94	81.29	family M50 n=1 Tax=Rhodopirellula pilleata TaxID=2...	[more]
Peptidase_M50	3.820e-87	78.95	domain-containing protein n=2 Tax=Rhodopirellula T...	[more]
Peptidase,	6.250e-86	76.61	M50 family n=1 Tax=Rhodopirellula sallentina SM41 ...	[more]
Peptidase_M50	2.750e-77	67.84	domain-containing protein n=2 Tax=Rhodopirellula i...	[more]
Peptidase_M50	2.650e-76	67.84	domain-containing protein n=11 Tax=Rhodopirellula ...	[more]
site-2	2.700e-76	69.59	protease family protein n=2 Tax=unclassified Rhodo...	[more]
Peptidase,	3.540e-76	67.84	M50 family protein n=1 Tax=Rhodopirellula europaea...	[more]
Peptidase	2.040e-74	66.08	M50 n=2 Tax=Rhodopirellula bahusiensis TaxID=20140...	[more]
Peptidase	1.620e-65	60.82	M50 n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A2...	[more]
Peptidase	1.810e-65	61.99	family M50 n=1 Tax=Stieleria neptunia TaxID=252797...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs77204	contig	H-canaliculatus_M_contigs77204:2..514 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	595460.RRSWK_01409
Model size	513
Max annot lvl	203682\|Planctomycetes
KEGG ko	ko:K16922
Hectar predicted targeting category	signal peptide
Exons	1
Evalue	6.23e-83
EggNOG OGs	COG0845@1\|root,COG1994@1\|root,COG0845@2\|Bacteria,COG1994@2\|Bacteria,2IWZT@203682\|Planctomycetes
Description	PFAM peptidase
Cds size	492
COG category	M
BRITE	ko00000,ko01002

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854109.5638952-UTR-H-canaliculatus_M_contigs77204:1..22	1696854109.5638952-UTR-H-canaliculatus_M_contigs77204:1..22	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs77204 2..22 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854109.5756586-CDS-H-canaliculatus_M_contigs77204:22..514	1696854109.5756586-CDS-H-canaliculatus_M_contigs77204:22..514	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs77204 23..514 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs77204.1.1	prot_H-canaliculatus_M_contigs77204.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs77204 23..514 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs77204:2..514+
coding sequence from alignment at H-canaliculatus_M_contigs77204:2..514+

protein sequence of mRNA_H-canaliculatus_M_contigs77204.1.1

>prot_H-canaliculatus_M_contigs77204.1.1 ID=prot_H-canaliculatus_M_contigs77204.1.1|Name=mRNA_H-canaliculatus_M_contigs77204.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=164bp
MFFMFAPLAYVDVTDAWKLPKRRSRIAIALGGVYFELICASVAVWTWWWC
QGDWIGNLAAQIFFLAGPATLLVNANPLLRLDGYYVVSDLVDVPNLREQG
RRLLGGMIESRIFLMKSPKTHLAGWRRTFSAWHAAASLVFQVVWMGGLVI
VVSMWAGPLGLLIA

mRNA from alignment at H-canaliculatus_M_contigs77204:2..514+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs77204.1.1 ID=mRNA_H-canaliculatus_M_contigs77204.1.1|Name=mRNA_H-canaliculatus_M_contigs77204.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=513bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77204:2..514+ (Hapterophycus canaliculatus Oshoro7m male)
CGGGTCGGCCGCGCCGGTGTCATGTTCTTCATGTTTGCACCATTGGCCTA
TGTCGACGTCACCGATGCGTGGAAGCTACCGAAGCGACGATCACGGATCG
CAATCGCGCTCGGCGGTGTCTATTTCGAATTGATTTGTGCCTCCGTCGCC
GTGTGGACGTGGTGGTGGTGCCAAGGTGACTGGATCGGCAACCTCGCCGC
ACAGATTTTCTTCCTCGCCGGACCAGCCACCTTGCTCGTCAACGCCAACC
CATTGCTAAGGTTGGATGGCTACTATGTTGTCTCCGATCTCGTCGATGTG
CCGAACCTGCGTGAACAAGGAAGACGGCTATTAGGTGGGATGATCGAGAG
TCGGATCTTCTTGATGAAGTCGCCGAAGACTCACTTGGCGGGATGGCGGC
GAACTTTCTCAGCTTGGCACGCAGCGGCCTCGCTCGTGTTTCAAGTCGTT
TGGATGGGCGGCCTCGTGATCGTCGTCTCGATGTGGGCTGGTCCCTTGGG
CTTGCTGATCGCG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77204:2..514+

>mRNA_H-canaliculatus_M_contigs77204.1.1 ID=mRNA_H-canaliculatus_M_contigs77204.1.1|Name=mRNA_H-canaliculatus_M_contigs77204.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77204:2..514+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTCTTCATGTTTGCACCATTGGCCTATGTCGACGTCACCGATGCGTG
GAAGCTACCGAAGCGACGATCACGGATCGCAATCGCGCTCGGCGGTGTCT
ATTTCGAATTGATTTGTGCCTCCGTCGCCGTGTGGACGTGGTGGTGGTGC
CAAGGTGACTGGATCGGCAACCTCGCCGCACAGATTTTCTTCCTCGCCGG
ACCAGCCACCTTGCTCGTCAACGCCAACCCATTGCTAAGGTTGGATGGCT
ACTATGTTGTCTCCGATCTCGTCGATGTGCCGAACCTGCGTGAACAAGGA
AGACGGCTATTAGGTGGGATGATCGAGAGTCGGATCTTCTTGATGAAGTC
GCCGAAGACTCACTTGGCGGGATGGCGGCGAACTTTCTCAGCTTGGCACG
CAGCGGCCTCGCTCGTGTTTCAAGTCGTTTGGATGGGCGGCCTCGTGATC
GTCGTCTCGATGTGGGCTGGTCCCTTGGGCTTGCTGATCGCG