mRNA_H-canaliculatus_M_contigs772.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs772.1.1
Unique NamemRNA_H-canaliculatus_M_contigs772.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 5.040e-24
Identity = 59/118 (50.00%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 GGTPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
            G TPLH ++      A +ALL+ GA+V  KNA   +PLH  A + G  G A M DLLLR GADET V  +G T  ++V  +   E+ D   +++D VRKLLA APADRAWRRRG L+L
Sbjct:  589 GSTPLHVASQEGRLAAGIALLRHGASVGKKNAAAQTPLHLVAAKAGSPGTAEMVDLLLRRGADETAVSENGHTAADMVVLKT--EESDSLAEDVDRVRKLLARAPADRAWRRRGFLIL 704          
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.870e-23
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    7 TPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
            TP   +    C++AALAL K GAN+++++  G +PL  AARQ G+ G   + D+LLR GADET ++ DG+T  EVVG           + +++ VR LL NAPADRAWRRRG LVL
Sbjct:  223 TPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVL 338          
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 8.420e-23
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 1
Query:    7 TPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
            TP   + +  C++AALAL K G+N+++++  G +PL  AARQ G+ G   + D+LLR GADET ++ DG+T  EVVG           + +++ VR LL NAP DRAWRRRG LVL
Sbjct:  174 TPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVL 289          
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Ankyrin (repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.450e-20
Identity = 58/121 (47.93%), Postives = 73/121 (60.33%), Query Frame = 1
Query:    1 GGTPLHASAVMRCYDAALAL---LKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
            G T LH +A+ R    A  L   LK GA+V+++   G S L   A + GK G   + DLLLRWGADET V  +G    + +G +  +ED  R  +E + VRKLLANAPADRAWRRR  LVL
Sbjct:  226 GHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIGMKVPEED--RIPEEFEGVRKLLANAPADRAWRRRCSLVL 344          
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFY7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.070e-20
Identity = 62/120 (51.67%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 GGTPLHASAVMRCYDAALALLKCGANVDSKNAF-GYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQR--RADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLV 351
            G TPL  +A     +A LALL+ GANV+SKN   G SPL  A R+G  D A    DLLLRWGADET VD D KT V ++  R  RA      ++  ++ V +LLA AP DRAWRRRG LV
Sbjct:  125 GRTPLQNAAFCGSCEAMLALLQLGANVNSKNTINGLSPLCSACREGHHDAA----DLLLRWGADETAVDSDEKTIVSMMTHRIFRA---AVASRQRLERVSELLARAPQDRAWRRRGFLV 237          
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: EsV-1-21 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.880e-18
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   16 HASAVMRCYDAALALLKCGANVDSK-NAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
            +A+A     D AL LL+ GA+V+++   FG S LH A     +D    + DLLLRWGADETVVD  G+TP+  + + R       + +  D+VRKLL NAPADR WRRRG LV+
Sbjct:  309 YAAASSSSVDMALLLLRYGADVNTRCYLFGSSVLHNACTN--RDNTEALVDLLLRWGADETVVDSSGRTPMNHLTEDRFTR---HSAETKDKVRKLLVNAPADRTWRRRGWLVM 417          
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: EsV-1-21 (n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP0_ESV1K)

HSP 1 Score: 88.6 bits (218), Expect = 3.980e-18
Identity = 53/105 (50.48%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   43 DAALALLKCGANVDSKNA-FGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
            D AL LL+ GA+V++    FG S LH A +   +D    M DLLLRWGADETVVD  G+TP++V       +   R  +  + VRKLL NAPADR WRRRG LV+
Sbjct:  376 DMALLLLRYGADVNASGGLFGSSALHNAIKN--RDNTEAMVDLLLRWGADETVVDDRGRTPLDVFTSGTRFQ---RTAETKERVRKLLVNAPADRTWRRRGWLVM 475          
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 5.330e-18
Identity = 51/118 (43.22%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 GGTPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
            G T LH +A     D  LALL+ GAN ++ +  G+ PLH   +   K  +  + DLLLRWGA+ET  D DG TP + +  + +DE   R Q       +LLANAPA RAWRRRG +++
Sbjct:  326 GSTSLHVAAYWETLDTMLALLQKGANANAPDDDGHGPLHLVCKYP-KARSVAVADLLLRWGAEETATDNDGNTPADFI--QSSDESDGRLQ-------RLLANAPAGRAWRRRGMVIM 433          
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: Reverse (transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC2_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.430e-17
Identity = 55/118 (46.61%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 GGTPLHASAVMRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAWRRRGCLVL 354
            G TP HA+A    ++A LALLK GA++++     ++PLH A    G +GA  + DLLLRW ADE   D  G+TP  +V  R A E  DR    +  V K L  AP DRAWR RG LVL
Sbjct:  418 GETPRHAAAGKLNFEATLALLKHGADMNALGQTRWTPLHSAVHSAGDEGAVEVVDLLLRWNADEADDDTYGRTPRNLV-VRMAPET-DRMFVNVQRVWKPLQYAPQDRAWRHRGMLVL 533          
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Match: EsV-1-8 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 5.180e-16
Identity = 47/102 (46.08%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   55 ALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRWGADETVVDRDGKTPVEVVGQRRADEDGDRA--QDEIDEVRKLLANAPADRAWRRRGCLVL 354
            AL + GA V  +   GY+PLH    +   +G     D+LLRWGADET ++  G +P + +G R     G     QDEID  R LL+ APADRAWRRRG LV+
Sbjct:    3 ALFQHGAQVGVRGNQGYTPLHETCWER-HEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVM 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs772.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.040e-2450.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.870e-2348.28protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin8.420e-2346.55repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Ankyrin2.450e-2047.93repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
Uncharacterized4.070e-2051.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-211.880e-1847.37n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
EsV-1-213.980e-1850.48n=1 Tax=Ectocarpus siliculosus virus 1 (isolate Ne... [more]
Ankyrin5.330e-1843.22repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Reverse1.430e-1746.61transcriptase domain-containing protein n=1 Tax=Ec... [more]
EsV-1-85.180e-1646.08n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs772contigH-canaliculatus_M_contigs772:4660..5013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G6X8
PFAMsAnk_2,Ank_4
Model size354
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.78e-23
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size324
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.4771714-CDS-H-canaliculatus_M_contigs772:4659..49831696854109.4771714-CDS-H-canaliculatus_M_contigs772:4659..4983Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs772 4660..4983 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.4941728-UTR-H-canaliculatus_M_contigs772:4983..50131696854109.4941728-UTR-H-canaliculatus_M_contigs772:4983..5013Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs772 4984..5013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs772.1.1prot_H-canaliculatus_M_contigs772.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs772 4660..4983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs772.1.1

>prot_H-canaliculatus_M_contigs772.1.1 ID=prot_H-canaliculatus_M_contigs772.1.1|Name=mRNA_H-canaliculatus_M_contigs772.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=108bp
MRCYDAALALLKCGANVDSKNAFGYSPLHGAARQGGKDGAARMTDLLLRW
GADETVVDRDGKTPVEVVGQRRADEDGDRAQDEIDEVRKLLANAPADRAW
RRRGCLVL
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mRNA from alignment at H-canaliculatus_M_contigs772:4660..5013-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs772.1.1 ID=mRNA_H-canaliculatus_M_contigs772.1.1|Name=mRNA_H-canaliculatus_M_contigs772.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=354bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs772:4660..5013- (Hapterophycus canaliculatus Oshoro7m male)
GGTGGCACGCCTCTTCATGCCTCCGCGGTGATGCGGTGCTACGACGCGGC CCTGGCCCTCCTAAAATGCGGCGCGAACGTCGACTCTAAGAACGCATTCG GCTACTCGCCCTTGCACGGAGCGGCGCGCCAGGGTGGCAAGGACGGGGCG GCGAGGATGACCGACCTCCTGTTGAGGTGGGGCGCAGATGAGACGGTCGT GGATCGTGACGGGAAAACGCCGGTGGAAGTTGTAGGCCAAAGGAGGGCGG ACGAGGACGGCGATCGTGCGCAGGACGAGATCGACGAGGTGCGCAAGCTG TTGGCGAACGCTCCGGCGGACAGAGCGTGGCGTCGCCGGGGGTGCCTGGT GCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs772:4660..5013-

>mRNA_H-canaliculatus_M_contigs772.1.1 ID=mRNA_H-canaliculatus_M_contigs772.1.1|Name=mRNA_H-canaliculatus_M_contigs772.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=324bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs772:4660..5013- (Hapterophycus canaliculatus Oshoro7m male)
ATGCGGTGCTACGACGCGGCCCTGGCCCTCCTAAAATGCGGCGCGAACGT
CGACTCTAAGAACGCATTCGGCTACTCGCCCTTGCACGGAGCGGCGCGCC
AGGGTGGCAAGGACGGGGCGGCGAGGATGACCGACCTCCTGTTGAGGTGG
GGCGCAGATGAGACGGTCGTGGATCGTGACGGGAAAACGCCGGTGGAAGT
TGTAGGCCAAAGGAGGGCGGACGAGGACGGCGATCGTGCGCAGGACGAGA
TCGACGAGGTGCGCAAGCTGTTGGCGAACGCTCCGGCGGACAGAGCGTGG
CGTCGCCGGGGGTGCCTGGTGCTC
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