mRNA_H-canaliculatus_M_contigs77193.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77193.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77193.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG5_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.330e-36
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1
Query:    1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
            L+QETALFR+RLEELSPAEM KFIPE GLFFEVV+ +RKAALRSKLLS+P AP +EFDRTTYYRIPFWQA DLIGKRQV
Sbjct:  121 LTQETALFRHRLEELSPAEMSKFIPEHGLFFEVVTPERKAALRSKLLSIPAAPVMEFDRTTYYRIPFWQASDLIGKRQV 199          
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS26_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.520e-21
Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
            L+QE+ALFRYRLE LS   +  FI   GL FEVVS D KAA RS+LL+ PGA   EF+R T+YRIPF QA DLIG+R V
Sbjct:  118 LTQESALFRYRLESLSSTGIISFIQSNGLAFEVVSADDKAARRSRLLTAPGATAAEFERCTFYRIPFAQATDLIGQRLV 196          
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSI2_9ARCH)

HSP 1 Score: 63.5 bits (153), Expect = 1.220e-10
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
            ++QE ALF++RL+EL+  E  +F+ + GL ++ V    K  L  KL+ + G     F  T +Y++PF QA+ L+G R V
Sbjct:   39 ITQECALFKHRLDELADEERAQFMYDNGLQYDRVDPSEKRRLEDKLIDIGGVTTASFPATHFYKVPFAQALALLGSRAV 117          
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H234_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.720e-10
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
            L QE +L +YRL+ LS  E   F+   G+ F+ VS + K + + KL+ + G   +   +TT+Y++PF QA+ L+  R V
Sbjct:  119 LGQECSLMKYRLDSLSDEERASFMLSNGMDFDPVSNEEKNSRKDKLIDLAGVTSVSIIKTTFYKVPFQQALSLVSSRSV 197          
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6J1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.290e-9
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
            L+QE ALFR+RL  L      +F+ E GL FE V    + A  + L  +     +     TYYR+PF +A+DLIG+R+V
Sbjct:  115 LTQECALFRHRLSRLRGDGFARFLREHGLRFEEVPDSERDARVTSLARIKNYENVPAQTATYYRVPFLEAIDLIGRREV 193          
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H4Z7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.460e-9
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1
Query:    1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRS-KLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQVSCR 246
            L+QE+ LFRYRLE+L   E+  F+   GL +E V       L+  + +  PG   L    T Y+++PF QA DL+G+RQV  R
Sbjct:  102 LAQESVLFRYRLEKLKSTEVIAFMQLNGLNYEPVEDVDPTLLKELQAVGTPGQALLGSHETMYFKVPFAQASDLVGRRQVLLR 184          
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YER9_AURAN)

HSP 1 Score: 58.9 bits (141), Expect = 2.930e-8
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
            L+QE ALF++RL  LS  ++G F+   GL FE VS D     RS  LS     G +     YYR+PF +A+DLIG+R+V
Sbjct:  117 LTQECALFKHRLGTLSGPQLGLFLAANGLKFEEVS-DADVDARSVALSKISKTG-DGGAAGYYRVPFVEAIDLIGRREV 193          
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507F984_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 4.020e-8
Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1
Query:    1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQVSCRA 249
            + QETALF YR ++    E  +F+    L   V++ + K  L ++L +  G    E  +  +YR+PF Q +DL+G+RQV   A
Sbjct:  131 IKQETALFMYRYKQEEQVERDRFLKHVQLDMSVITPEEKKNLETELRATHGLSTDELSQINFYRVPFEQVLDLVGRRQVYLHA 213          
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y793_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.390e-7
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDR-----TTYYRIPFWQAVDLIGKRQVSCRA 249
            LSQE+ALFRYRL+++S  E   F+   GL ++  +       +SKL +V  A  L+        T Y+++PF +A+DL+G R+V   A
Sbjct:  119 LSQESALFRYRLDKMSREEKLHFMKSNGLSYQEATPKELEQRQSKLKAVRDAGVLDIKLRLAPLTAYFKVPFTEALDLVGTRKVYIEA 206          
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZF14_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.580e-7
Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query:    1 LSQETALFRYRLEEL--SPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGA---PGLEFDRTTYYRIPFWQAVDLIGKR 231
            L+QE ALFR+RL+++  S +    F+ +  L F+ VS   K  LR  LLS+P +   PG E   + +Y++PF QA+DL+ KR
Sbjct:  143 LTQECALFRFRLDKILTSSSAFRAFLVKADLHFDRVSDLEKERLREFLLSIPNSNVSPG-ELSVSVFYQVPFVQALDLVAKR 223          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
DNA1.330e-3684.81primase large subunit n=2 Tax=Ectocarpus TaxID=287... [more]
DNA2.520e-2163.29primase large subunit n=1 Tax=Tribonema minus TaxI... [more]
Uncharacterized1.220e-1037.97protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
DNA2.720e-1036.71primase large subunit n=2 Tax=Spumella elongata Ta... [more]
DNA1.290e-940.51primase large subunit n=1 Tax=Pelagomonas calceola... [more]
Hypothetical3.460e-940.96protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
DNA2.930e-845.57primase large subunit n=1 Tax=Aureococcus anophage... [more]
DNA4.020e-834.94primase large subunit n=2 Tax=Spizellomyces TaxID=... [more]
DNA1.390e-737.50primase large subunit n=1 Tax=Pythium brassicum Ta... [more]
Hypothetical3.580e-741.46protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77193contigH-canaliculatus_M_contigs77193:216..464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LHG5
Preferred namePRIM2
PFAMsDNA_primase_lrg
Model size249
Max annot lvl2759|Eukaryota
KEGG rclassRC00151,RC02795
KEGG koko:K01101,ko:K02685
KEGG ReactionR00375,R00376,R00377,R00378,R03024
KEGG Pathwayko00230,ko00240,ko00627,ko01100,ko01120,ko03030,map00230,map00240,map00627,map01100,map01120,map03030
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0001654,GO:0001745,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006273,GO:0006281,GO:0006302,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019725,GO:0022402,GO:0022616,GO:0030880,GO:0030894,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0046483,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050896,GO:0051276,GO:0051716,GO:0055029,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090596,GO:0097159,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902295,GO:1902318,GO:1902494,GO:1902969,GO:1902981,GO:1903047,GO:1990234
Exons1
Evalue2.18e-37
EggNOG OGsCOG2219@1|root,KOG2267@2759|Eukaryota
EC3.1.3.41
DescriptionDNA primase activity
Cds size249
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.4451103-CDS-H-canaliculatus_M_contigs77193:215..4641696854109.4451103-CDS-H-canaliculatus_M_contigs77193:215..464Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77193 216..464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77193.1.1prot_H-canaliculatus_M_contigs77193.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77193 216..464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77193.1.1

>prot_H-canaliculatus_M_contigs77193.1.1 ID=prot_H-canaliculatus_M_contigs77193.1.1|Name=mRNA_H-canaliculatus_M_contigs77193.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=83bp
LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVP
GAPGLEFDRTTYYRIPFWQAVDLIGKRQVSCRA
back to top

mRNA from alignment at H-canaliculatus_M_contigs77193:216..464-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77193.1.1 ID=mRNA_H-canaliculatus_M_contigs77193.1.1|Name=mRNA_H-canaliculatus_M_contigs77193.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=249bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77193:216..464- (Hapterophycus canaliculatus Oshoro7m male)
CTCTCGCAGGAGACCGCCCTGTTCAGGTACCGCCTGGAGGAGCTCTCCCC CGCCGAGATGGGCAAGTTCATCCCCGAGCAGGGGCTGTTCTTTGAGGTCG TGAGCGGGGACCGGAAGGCGGCACTCAGGTCCAAGCTACTGTCGGTCCCG GGGGCCCCGGGGTTGGAGTTCGACCGAACGACGTACTACAGGATACCCTT CTGGCAGGCCGTGGACCTCATCGGCAAGCGCCAGGTGAGCTGCCGGGCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77193:216..464-

>mRNA_H-canaliculatus_M_contigs77193.1.1 ID=mRNA_H-canaliculatus_M_contigs77193.1.1|Name=mRNA_H-canaliculatus_M_contigs77193.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=249bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77193:216..464- (Hapterophycus canaliculatus Oshoro7m male)
CTCTCGCAGGAGACCGCCCTGTTCAGGTACCGCCTGGAGGAGCTCTCCCC
CGCCGAGATGGGCAAGTTCATCCCCGAGCAGGGGCTGTTCTTTGAGGTCG
TGAGCGGGGACCGGAAGGCGGCACTCAGGTCCAAGCTACTGTCGGTCCCG
GGGGCCCCGGGGTTGGAGTTCGACCGAACGACGTACTACAGGATACCCTT
CTGGCAGGCCGTGGACCTCATCGGCAAGCGCCAGGTGAGCTGCCGGGCG
back to top