mRNA_H-canaliculatus_M_contigs77189.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77189.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77189.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 2.670e-21
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVDHELGEY 135
            QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVDHELGEY
Sbjct:  470 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVDHELGEY 514
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJN9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 1.430e-12
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVDH 120
            QVVMS GGTIEYF+ AVFN+PTLAEAY VAA +GLRKV+H
Sbjct:  235 QVVMSTGGTIEYFRNAVFNYPTLAEAYRVAALNGLRKVEH 274
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.890e-12
Identity = 31/38 (81.58%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKV 114
            QVVM+QGG+++YF+TAVFN+PTLAEAYNVAA DGLRKV
Sbjct:  572 QVVMAQGGSVDYFRTAVFNYPTLAEAYNVAARDGLRKV 609
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JAY8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.680e-11
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:    1 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVDH--ELG 129
            QVVMS GGT+EYF+ AVFN+PTLAEAY VAA +GLRK+D   E+G
Sbjct:  511 QVVMSTGGTLEYFRNAVFNYPTLAEAYRVAALNGLRKIDRLREMG 555
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Putative (soluble pyridine nucleotide transhydrogenase n=16 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FH22_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.680e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVD 117
            QVVMS GGT+EYF+ AVFN+PTLAEAY VAA +GLRKVD
Sbjct:  516 QVVMSTGGTLEYFRNAVFNYPTLAEAYRVAALNGLRKVD 554
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCY3_HYAAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.140e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVD 117
            QVVMS  GT+EYF+ AVFN+PTLAEAY VAA DGLRKVD
Sbjct:  522 QVVMSTDGTLEYFRNAVFNYPTLAEAYRVAALDGLRKVD 560
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL68_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 3.140e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVD 117
            QVVMS GGTIEYF+ AVFN+PTLAEAY VAA +GLRKV+
Sbjct:  507 QVVMSTGGTIEYFRNAVFNYPTLAEAYRVAALNGLRKVE 545
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJI3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.140e-11
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVD 117
            QVVMS GGTIEYF+ AVFN+PTLAEAY VAA +GLRKV+
Sbjct:  504 QVVMSTGGTIEYFRNAVFNYPTLAEAYRVAALNGLRKVE 542
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Pyr_redox_dim (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.420e-11
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:   46 AVFNFPTLAEAYNVAAADGLRKVDHELGEY 135
            AVFNFPTLAEAYNVAAADGLRKVDHELGEY
Sbjct:  235 AVFNFPTLAEAYNVAAADGLRKVDHELGEY 264
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BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Match: Soluble (pyridine nucleotide transhydrogenase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VHW9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.010e-11
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QVVMSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVD 117
            QVVMS GGT+EYF+ AVFN+PTLAEAY VAA +GLRK++
Sbjct:  322 QVVMSTGGTLEYFRNAVFNYPTLAEAYRVAALNGLRKIE 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77189.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.670e-21100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.430e-1280.00protein (Fragment) n=1 Tax=Nothophytophthora sp. C... [more]
Uncharacterized1.890e-1281.58protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKJ5... [more]
Uncharacterized1.680e-1171.11protein n=1 Tax=Phytophthora aleatoria TaxID=24960... [more]
Putative1.680e-1179.49soluble pyridine nucleotide transhydrogenase n=16 ... [more]
Uncharacterized3.140e-1179.49protein n=1 Tax=Hyaloperonospora arabidopsidis (st... [more]
Uncharacterized3.140e-1179.49protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized3.140e-1179.49protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
Pyr_redox_dim3.420e-11100.00domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Soluble8.010e-1174.36pyridine nucleotide transhydrogenase n=1 Tax=Phyto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77189contigH-canaliculatus_M_contigs77189:377..514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHH4
PFAMsPyr_redox_2,Pyr_redox_dim
Model size138
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.31e-20
EggNOG OGsCOG1249@1|root,KOG1335@2759|Eukaryota
Descriptiondihydrolipoyl dehydrogenase activity
Cds size129
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.365616-CDS-H-canaliculatus_M_contigs77189:376..5051696854109.365616-CDS-H-canaliculatus_M_contigs77189:376..505Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77189 377..505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.377166-UTR-H-canaliculatus_M_contigs77189:505..5141696854109.377166-UTR-H-canaliculatus_M_contigs77189:505..514Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs77189 506..514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77189.1.1prot_H-canaliculatus_M_contigs77189.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77189 377..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77189.1.1

>prot_H-canaliculatus_M_contigs77189.1.1 ID=prot_H-canaliculatus_M_contigs77189.1.1|Name=mRNA_H-canaliculatus_M_contigs77189.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=43bp
MSQGGTIEYFQTAVFNFPTLAEAYNVAAADGLRKVDHELGEY*
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mRNA from alignment at H-canaliculatus_M_contigs77189:377..514-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77189.1.1 ID=mRNA_H-canaliculatus_M_contigs77189.1.1|Name=mRNA_H-canaliculatus_M_contigs77189.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=138bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77189:377..514- (Hapterophycus canaliculatus Oshoro7m male)
CAGGTGGTGATGAGCCAGGGCGGGACGATCGAGTACTTCCAGACCGCGGT
GTTCAACTTCCCCACGCTCGCCGAGGCTTACAACGTTGCCGCTGCCGATG
GTCTGCGCAAGGTGGACCACGAGCTCGGCGAATACTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77189:377..514-

>mRNA_H-canaliculatus_M_contigs77189.1.1 ID=mRNA_H-canaliculatus_M_contigs77189.1.1|Name=mRNA_H-canaliculatus_M_contigs77189.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=129bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77189:377..514- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCCAGGGCGGGACGATCGAGTACTTCCAGACCGCGGTGTTCAACTT
CCCCACGCTCGCCGAGGCTTACAACGTTGCCGCTGCCGATGGTCTGCGCA
AGGTGGACCACGAGCTCGGCGAATACTAG
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