mRNA_H-canaliculatus_M_contigs77187.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77187.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77187.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77187.1.1 vs.
Match: Similar (to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.670e-30
Identity = 64/84 (76.19%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 QKVFNTRRALEQLERDAGPITLGGEGDAG------AVTPKHIVDGDRHATLRLLWFIIARYSLSALLDRDALAREAAGVVSAAK 234
            QK+FNT+RALE+LE DAGPITLG            AVTPK IVDGDRHATLRLLWFII RYSLSALLDRDALAREA GVVSAA+
Sbjct:  588 QKIFNTKRALERLEADAGPITLGSNSSXXXXXXXXAVTPKEIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAEGVVSAAR 671
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BLAST of mRNA_H-canaliculatus_M_contigs77187.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.970e-19
Identity = 46/58 (79.31%), Postives = 50/58 (86.21%), Query Frame = 1 
Query:   61 TLGGEGDAGAVTPKHIVDGDRHATLRLLWFIIARYSLSALLDRDALAREAAGVVSAAK 234
            + G  G  GAV+PK IVDGDRHATLRLLWFII RYSLSALLDRDALAREA GV+SAA+
Sbjct:  494 SCGSGGGGGAVSPKDIVDGDRHATLRLLWFIITRYSLSALLDRDALAREAQGVISAAR 551
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BLAST of mRNA_H-canaliculatus_M_contigs77187.1.1 vs.
Match: Calponin-homology ((CH) domain-containing protein n=1 Tax=Schistosoma rodhaini TaxID=6188 RepID=A0A183S106_9TREM)

HSP 1 Score: 50.1 bits (118), Expect = 2.310e-5
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    1 QKVFNTRRALEQLERDAGPITLGGEGDAGAVTPKHIVDGDRHATLRLLWFIIARYSLSALLDRDALARE 207
            QK+ N   AL+  E+  G I++    D   + P+ IVDG R  TL LLW ++ R+ + ALLD  AL  E
Sbjct:  113 QKIHNVGVALKSFEQ-YGQISMA---DGSLIDPRDIVDGHREKTLTLLWCLLLRHQVLALLDHSALENE 177
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BLAST of mRNA_H-canaliculatus_M_contigs77187.1.1 vs.
Match: Uncharacterized (protein n=4 Tax=Schistosoma TaxID=6181 RepID=A0A183MGC2_9TREM)

HSP 1 Score: 50.1 bits (118), Expect = 3.360e-5
Identity = 28/69 (40.58%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:    1 QKVFNTRRALEQLERDAGPITLGGEGDAGAVTPKHIVDGDRHATLRLLWFIIARYSLSALLDRDALARE 207
            QK+ N   AL+  E+  G I++    D   + P+ IVDG R  TL LLW ++ R+ + ALLD  AL  E
Sbjct:  824 QKIHNVGVALKSFEQ-YGQISMA---DGSLIDPRDIVDGHREKTLTLLWCLLLRHQVLALLDHSALENE 888
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BLAST of mRNA_H-canaliculatus_M_contigs77187.1.1 vs.
Match: Calponin-homology ((CH) domain-containing protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A3P6ZBB1_HYMDI)

HSP 1 Score: 49.7 bits (117), Expect = 4.400e-5
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 QKVFNTRRALEQLERDAGPITLGGEGDAGA-VTPKHIVDGDRHATLRLLWFIIARYSLSALLDRDALARE 207
            QK+ N R AL   E+  G   L     AG  ++ + IVDG R  TL LLWFI+ R+ ++ALL+  AL  E
Sbjct:  326 QKIHNVRLALSAFEKVVGQNQL--HTAAGKPISERDIVDGHRSKTLSLLWFILLRFQVTALLNPPALRNE 393
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BLAST of mRNA_H-canaliculatus_M_contigs77187.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A564YXY1_HYMDI)

HSP 1 Score: 49.7 bits (117), Expect = 4.610e-5
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 QKVFNTRRALEQLERDAGPITLGGEGDAGA-VTPKHIVDGDRHATLRLLWFIIARYSLSALLDRDALARE 207
            QK+ N R AL   E+  G   L     AG  ++ + IVDG R  TL LLWFI+ R+ ++ALL+  AL  E
Sbjct:  706 QKIHNVRLALSAFEKVVGQNQL--HTAAGKPISERDIVDGHRSKTLSLLWFILLRFQVTALLNPPALRNE 773
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BLAST of mRNA_H-canaliculatus_M_contigs77187.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3TY65_RODNA)

HSP 1 Score: 48.9 bits (115), Expect = 8.510e-5
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:    1 QKVFNTRRALEQLERDAGP---ITLGGEGDAGAVTPKHIVDGDRHATLRLLWFIIARYSLSALLDRDALAREAAGVVSAAK 234
            QK+ N R AL   E+  G     T  G+     ++ + IVDG R  TL LLWFI+ R+ ++ALL+  AL  E + ++ + +
Sbjct:  846 QKIHNVRLALSAFEKIVGQKHLYTAAGK----PISERDIVDGHRSKTLSLLWFILLRFQVTALLNPPALRGEISRLIDSTR 922
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77187.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Similar5.670e-3076.19to asp (Abnormal spindle)-like, microcephaly assoc... [more]
Uncharacterized1.970e-1979.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Calponin-homology2.310e-540.58(CH) domain-containing protein n=1 Tax=Schistosoma... [more]
Uncharacterized3.360e-540.58protein n=4 Tax=Schistosoma TaxID=6181 RepID=A0A18... [more]
Calponin-homology4.400e-542.86(CH) domain-containing protein n=2 Tax=Hymenolepis... [more]
Uncharacterized4.610e-542.86protein n=2 Tax=Hymenolepis diminuta TaxID=6216 Re... [more]
Uncharacterized8.510e-535.80protein n=1 Tax=Rodentolepis nana TaxID=102285 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77187contigH-canaliculatus_M_contigs77187:227..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLN9
Preferred nameASPM
PFAMsASH,Arm,CH,IQ
Model size234
Max annot lvl2759|Eukaryota
KEGG koko:K16743,ko:K16774
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
Exons1
Evalue9.3e-31
EggNOG OGsCOG5022@1|root,KOG0165@1|root,KOG0160@2759|Eukaryota,KOG0165@2759|Eukaryota
Descriptionnegative regulation of asymmetric cell division
Cds size234
COG categoryZ
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854109.3333411-CDS-H-canaliculatus_M_contigs77187:226..4601696854109.3333411-CDS-H-canaliculatus_M_contigs77187:226..460Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77187 227..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77187.1.1prot_H-canaliculatus_M_contigs77187.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77187 227..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77187.1.1

>prot_H-canaliculatus_M_contigs77187.1.1 ID=prot_H-canaliculatus_M_contigs77187.1.1|Name=mRNA_H-canaliculatus_M_contigs77187.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=78bp
QKVFNTRRALEQLERDAGPITLGGEGDAGAVTPKHIVDGDRHATLRLLWF
IIARYSLSALLDRDALAREAAGVVSAAK
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mRNA from alignment at H-canaliculatus_M_contigs77187:227..460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77187.1.1 ID=mRNA_H-canaliculatus_M_contigs77187.1.1|Name=mRNA_H-canaliculatus_M_contigs77187.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77187:227..460- (Hapterophycus canaliculatus Oshoro7m male)
CAGAAAGTGTTCAACACCAGGAGGGCGCTCGAGCAGCTGGAACGAGACGC
CGGCCCCATCACGCTCGGCGGCGAGGGTGACGCCGGCGCGGTGACCCCGA
AGCACATCGTCGACGGCGACCGGCACGCGACCCTGCGCCTCCTGTGGTTC
ATCATCGCCCGCTACTCGCTCTCGGCGCTGCTGGACCGCGACGCCCTCGC
GCGGGAGGCGGCGGGCGTGGTCTCCGCCGCCAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77187:227..460-

>mRNA_H-canaliculatus_M_contigs77187.1.1 ID=mRNA_H-canaliculatus_M_contigs77187.1.1|Name=mRNA_H-canaliculatus_M_contigs77187.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=234bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77187:227..460- (Hapterophycus canaliculatus Oshoro7m male)
CAGAAAGTGTTCAACACCAGGAGGGCGCTCGAGCAGCTGGAACGAGACGC
CGGCCCCATCACGCTCGGCGGCGAGGGTGACGCCGGCGCGGTGACCCCGA
AGCACATCGTCGACGGCGACCGGCACGCGACCCTGCGCCTCCTGTGGTTC
ATCATCGCCCGCTACTCGCTCTCGGCGCTGCTGGACCGCGACGCCCTCGC
GCGGGAGGCGGCGGGCGTGGTCTCCGCCGCCAAG
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