mRNA_H-canaliculatus_M_contigs77119.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77119.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77119.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77119.1.1 vs.
Match: FMN (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR06_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.990e-25
Identity = 59/64 (92.19%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    4 LEEAKRKDVKKKEAPKEISLLDGKRAMNTSIAIARIKMTHAETRQAIMNMDETALSSNVLQSLQ 195
            LEEAK+KDVKK EAPKEISLLDGKRAMNTSIAIARIKMT+AETRQA+MNMDET LSSNVLQSLQ
Sbjct: 3127 LEEAKKKDVKK-EAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQ 3189
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BLAST of mRNA_H-canaliculatus_M_contigs77119.1.1 vs.
Match: Formin-like (2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT97_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.280e-24
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:    4 LEEAKRKDVKKKEAPKEISLLDGKRAMNTSIAIARIKMTHAETRQAIMNMDETALSSNVLQSLQ 195
            L+EAK+KDVKK EAPKEISLLDGKRAMNTSIAIARIKMT+AETRQA+MNMDET LSSNVLQSLQ
Sbjct: 2255 LDEAKKKDVKK-EAPKEISLLDGKRAMNTSIAIARIKMTYAETRQAVMNMDETVLSSNVLQSLQ 2317
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BLAST of mRNA_H-canaliculatus_M_contigs77119.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YER3_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.480e-7
Identity = 29/63 (46.03%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:   10 EAKRKDVKKKEAPKE-ISLLDGKRAMNTSIAIARIKMTHAETRQAIMNMDETALSSNVLQSLQ 195
            +AK K   KK A KE ++L+DG+RA N  IAIARIK+T+A+ R+ I N+++++ S+  +++LQ
Sbjct:    7 QAKPKKAAKKSARKEKVALIDGRRATNAGIAIARIKLTYAQMREKITNLEDSSFSTVQMRTLQ 69
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BLAST of mRNA_H-canaliculatus_M_contigs77119.1.1 vs.
Match: Formin (domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H6I2_ACACA)

HSP 1 Score: 53.1 bits (126), Expect = 1.730e-6
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    4 LEEAKRKDVKKKEAPKE---ISLLDGKRAMNTSIAIARIKMTHAETRQAIMNMDETALSSNVLQSLQVC 201
            L EAK+ + K ++ P +   +S+LD KRA NTSI +AR KM +A+ R+AI ++DET L+ + L SL+ C
Sbjct:  617 LAEAKKVEKKDEDEPAKKQAVSVLDPKRAQNTSIMLARFKMPYADLRKAIEDLDETILTVDNLTSLKQC 685
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77119.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
FMN8.990e-2592.19protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Formin-like2.280e-2490.632 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=... [more]
Hypothetical4.480e-746.03protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
Formin1.730e-646.38domain containing protein n=1 Tax=Acanthamoeba cas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77119contigH-canaliculatus_M_contigs77119:207..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LT97
PFAMsDrf_FH3,Drf_GBD,FH2
Model size201
Max annot lvl2759|Eukaryota
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
Exons1
Evalue3.74e-25
EggNOG OGsKOG1922@1|root,KOG1922@2759|Eukaryota
Descriptionactin binding
Cds size201
COG categoryE
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854108.9850755-CDS-H-canaliculatus_M_contigs77119:206..4071696854108.9850755-CDS-H-canaliculatus_M_contigs77119:206..407Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77119 207..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77119.1.1prot_H-canaliculatus_M_contigs77119.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77119 207..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77119.1.1

>prot_H-canaliculatus_M_contigs77119.1.1 ID=prot_H-canaliculatus_M_contigs77119.1.1|Name=mRNA_H-canaliculatus_M_contigs77119.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=67bp
QLEEAKRKDVKKKEAPKEISLLDGKRAMNTSIAIARIKMTHAETRQAIMN
MDETALSSNVLQSLQVC
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mRNA from alignment at H-canaliculatus_M_contigs77119:207..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77119.1.1 ID=mRNA_H-canaliculatus_M_contigs77119.1.1|Name=mRNA_H-canaliculatus_M_contigs77119.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77119:207..407+ (Hapterophycus canaliculatus Oshoro7m male)
CAGCTCGAGGAGGCGAAGCGGAAGGACGTGAAGAAGAAGGAGGCGCCCAA
GGAGATCTCGCTCCTGGACGGCAAGCGCGCGATGAACACGTCCATCGCCA
TCGCGCGCATCAAGATGACCCACGCCGAGACGCGGCAGGCCATCATGAAC
ATGGACGAAACGGCCCTGTCTTCCAACGTGCTGCAGTCCCTTCAGGTTTG
T
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77119:207..407+

>mRNA_H-canaliculatus_M_contigs77119.1.1 ID=mRNA_H-canaliculatus_M_contigs77119.1.1|Name=mRNA_H-canaliculatus_M_contigs77119.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77119:207..407+ (Hapterophycus canaliculatus Oshoro7m male)
CAGCTCGAGGAGGCGAAGCGGAAGGACGTGAAGAAGAAGGAGGCGCCCAA
GGAGATCTCGCTCCTGGACGGCAAGCGCGCGATGAACACGTCCATCGCCA
TCGCGCGCATCAAGATGACCCACGCCGAGACGCGGCAGGCCATCATGAAC
ATGGACGAAACGGCCCTGTCTTCCAACGTGCTGCAGTCCCTTCAGGTTTG
T
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