mRNA_H-canaliculatus_M_contigs77049.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77049.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77049.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: Peripla_BP_6 (domain-containing protein n=2 Tax=Rhodobacterales TaxID=204455 RepID=A0A2R8BA24_9RHOB)

HSP 1 Score: 233 bits (593), Expect = 3.950e-73
Identity = 115/127 (90.55%), Postives = 120/127 (94.49%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNCN 381
            GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHG ADITPAMMRDGMEAL ITE KM ALGLPGFGPEF+VSCENHGGPGLVGMTQWDASAKTWSLIN FA SDM+V+QPLIDEDSAAYAAENNI ++CN
Sbjct:  299 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGVADITPAMMRDGMEALVITEEKMAALGLPGFGPEFNVSCENHGGPGLVGMTQWDASAKTWSLINNFAPSDMDVIQPLIDEDSAAYAAENNIEASCN 425          
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: ABC (transporter permease n=6 Tax=Tateyamaria TaxID=299261 RepID=A0A1P8MZK8_9RHOB)

HSP 1 Score: 224 bits (572), Expect = 5.520e-70
Identity = 109/126 (86.51%), Postives = 119/126 (94.44%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNC 378
            GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHG A+ITPAMMRDGMEALEITEAKMT LGLPGFGP FSVSCENHGGPGL+GMTQWDASA TWSLI++F+ +DMEV+QPLIDEDSA+YA+ENNI + C
Sbjct:  299 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGEAEITPAMMRDGMEALEITEAKMTELGLPGFGPSFSVSCENHGGPGLIGMTQWDASAGTWSLISDFSETDMEVIQPLIDEDSASYASENNIEAGC 424          
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: ABC (transporter substrate-binding protein n=1 Tax=Planktotalea arctica TaxID=1481893 RepID=UPI000A174CE6)

HSP 1 Score: 221 bits (562), Expect = 1.800e-68
Identity = 108/127 (85.04%), Postives = 115/127 (90.55%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNCN 381
            GDQ+GTVLYNRGLYAAMLAAEAAKTAQEIHGTADIT AMMRDGMEALEITE KM ALGLPGFGP F VSCENHGGPGLVGMTQWDASAK W++I+EF  SDM+V+QPLIDEDS AYAAEN I + CN
Sbjct:  299 GDQVGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITAAMMRDGMEALEITEEKMAALGLPGFGPAFKVSCENHGGPGLVGMTQWDASAKKWTMISEFGPSDMDVIQPLIDEDSMAYAAENKIEAGCN 425          
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: ABC (transporter substrate-binding protein n=2 Tax=Sulfitobacter TaxID=60136 RepID=A0A6P0CBR4_9RHOB)

HSP 1 Score: 216 bits (551), Expect = 8.490e-67
Identity = 106/126 (84.13%), Postives = 114/126 (90.48%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNC 378
            GDQIGTVLYNRGLYAAMLAAEA KTAQEIHG ADITPA MRDGMEALEITEAKM ALGLP FGPEFSVSCENHGG GLVG+TQWDA  K+WSLI++FA +DM+V+ PLI+EDSAAYAAENNI  NC
Sbjct:  301 GDQIGTVLYNRGLYAAMLAAEAVKTAQEIHGVADITPAQMRDGMEALEITEAKMAALGLPNFGPEFSVSCENHGGTGLVGVTQWDADTKSWSLISDFAETDMDVIGPLIEEDSAAYAAENNIEGNC 426          
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: ABC (transporter permease n=1 Tax=Thalassococcus sp. S3 TaxID=2017482 RepID=A0A4P6MFB5_9RHOB)

HSP 1 Score: 216 bits (549), Expect = 1.690e-66
Identity = 104/126 (82.54%), Postives = 115/126 (91.27%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNC 378
            GDQIGTVLYNRGLYAAMLAAEAA+TAQEIHG A+ITPAMMRDGMEAL +TE +MT LG+P FGP F VSCENHGGPGLVG+TQWDA AKTWSLI++F  SDMEV+QPLID DSA+YA+ENNIASNC
Sbjct:  301 GDQIGTVLYNRGLYAAMLAAEAARTAQEIHGEAEITPAMMRDGMEALNMTEERMTELGMPNFGPAFQVSCENHGGPGLVGVTQWDAEAKTWSLISDFKESDMEVIQPLIDADSASYASENNIASNC 426          
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: ABC (transporter substrate-binding protein n=1 Tax=Sulfitobacter sp. JK7-1 TaxID=2829501 RepID=UPI001BAFB02B)

HSP 1 Score: 214 bits (544), Expect = 9.520e-66
Identity = 105/126 (83.33%), Postives = 113/126 (89.68%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNC 378
            GDQIGTVLYNRGLYAAMLAAEA KTAQEIHG ADITPAMMRDGMEALEITEAKM ALGLP FGPEF+VSCENHGG GLVGMTQWDA AK WSLI++FA +DM+V+ PLI+EDS AYA+ENNI   C
Sbjct:  301 GDQIGTVLYNRGLYAAMLAAEATKTAQEIHGVADITPAMMRDGMEALEITEAKMAALGLPNFGPEFNVSCENHGGTGLVGMTQWDAEAKEWSLISDFAPTDMDVIGPLIEEDSTAYASENNIEVGC 426          
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: Amino (acid/amide ABC transporter substrate-binding protein (HAAT family) n=2 Tax=Sulfitobacter mediterraneus TaxID=83219 RepID=A0A2T6CF43_9RHOB)

HSP 1 Score: 213 bits (541), Expect = 2.680e-65
Identity = 102/126 (80.95%), Postives = 112/126 (88.89%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNC 378
            GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGME LEITE KM  LG+P FGP FSVSC+NHGGPGL+GMTQWDA+AK W LI+EF+ +DM V+QPLID DS AYA+ENNI + C
Sbjct:  301 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMENLEITEEKMAGLGMPNFGPSFSVSCDNHGGPGLIGMTQWDATAKEWKLISEFSETDMSVIQPLIDADSGAYASENNIEAGC 426          
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: ABC (transporter permease (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A357MKN5_9RHOB)

HSP 1 Score: 204 bits (519), Expect = 2.850e-65
Identity = 97/126 (76.98%), Postives = 109/126 (86.51%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNC 378
            GDQ+GTVLYNRGLYAAMLAAEAAKTA EIHGT D+TPAMMRDGMEALEITE KM ALGLP FGPEF VSC+NHGG G+VGMTQWDA AK W+LI++F  SD +V+QPLI++DS AYA ENN+   C
Sbjct:   43 GDQVGTVLYNRGLYAAMLAAEAAKTAMEIHGTKDLTPAMMRDGMEALEITEEKMAALGLPNFGPEFKVSCQNHGGNGMVGMTQWDAEAKEWTLISDFKQSDQDVIQPLIEQDSTAYAEENNLEPQC 168          
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: Peripla_BP_6 (domain-containing protein n=11 Tax=Rhodobacterales TaxID=204455 RepID=V9WPH7_9RHOB)

HSP 1 Score: 210 bits (534), Expect = 3.000e-64
Identity = 101/126 (80.16%), Postives = 114/126 (90.48%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNC 378
            GDQIG VLYNRG+YAAMLA EAAKTAQEIHGT DITPAMMRDGMEALE+ EA+M+ALG+P FGP F+VSCENHGGPGLVGMTQWDASAKTW+LI++FA SD +V+QPLI+EDS AYA ENNI + C
Sbjct:  301 GDQIGNVLYNRGMYAAMLAVEAAKTAQEIHGTNDITPAMMRDGMEALEMPEARMSALGMPYFGPSFNVSCENHGGPGLVGMTQWDASAKTWNLISDFAPSDRDVIQPLIEEDSMAYAKENNIEAGC 426          
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Match: Peripla_BP_6 (domain-containing protein n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1L9NWJ0_9RHOB)

HSP 1 Score: 209 bits (532), Expect = 5.550e-64
Identity = 102/126 (80.95%), Postives = 111/126 (88.10%), Query Frame = 1
Query:    1 GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEITEAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAASDMEVVQPLIDEDSAAYAAENNIASNC 378
            GDQIGTVLYNRGLYAAMLAAEA KTAQEIHG ADI  A MRDGMEALEITE KM ALGLPGFGP F VSCENHGGPGLVGMTQWDA+AK W+LI++F+ SDM+++QPLIDEDS AYAAEN I  +C
Sbjct:  299 GDQIGTVLYNRGLYAAMLAAEAVKTAQEIHGVADINAAQMRDGMEALEITEDKMAALGLPGFGPSFKVSCENHGGPGLVGMTQWDAAAKEWTLISDFSPSDMDLIQPLIDEDSMAYAAENKIEPSC 424          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77049.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peripla_BP_63.950e-7390.55domain-containing protein n=2 Tax=Rhodobacterales ... [more]
ABC5.520e-7086.51transporter permease n=6 Tax=Tateyamaria TaxID=299... [more]
ABC1.800e-6885.04transporter substrate-binding protein n=1 Tax=Plan... [more]
ABC8.490e-6784.13transporter substrate-binding protein n=2 Tax=Sulf... [more]
ABC1.690e-6682.54transporter permease n=1 Tax=Thalassococcus sp. S3... [more]
ABC9.520e-6683.33transporter substrate-binding protein n=1 Tax=Sulf... [more]
Amino2.680e-6580.95acid/amide ABC transporter substrate-binding prote... [more]
ABC2.850e-6576.98transporter permease (Fragment) n=1 Tax=Rhodobacte... [more]
Peripla_BP_63.000e-6480.16domain-containing protein n=11 Tax=Rhodobacterales... [more]
Peripla_BP_65.550e-6480.95domain-containing protein n=4 Tax=Alphaproteobacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77049contigH-canaliculatus_M_contigs77049:3..386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog439497.RR11_3063
PFAMsPeripla_BP_6
Model size384
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01999
KEGG TC3.A.1.4
KEGG Pathwayko02010,ko02024,map02010,map02024
KEGG ModuleM00237
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.97e-67
EggNOG OGsCOG0683@1|root,COG0683@2|Bacteria,1MV5T@1224|Proteobacteria,2TQZC@28211|Alphaproteobacteria,4NBST@97050|Ruegeria
DescriptionPeriplasmic binding protein
Cds size384
COG categoryE
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854108.6215687-CDS-H-canaliculatus_M_contigs77049:2..3861696854108.6215687-CDS-H-canaliculatus_M_contigs77049:2..386Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77049 3..386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77049.1.1prot_H-canaliculatus_M_contigs77049.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77049 3..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77049.1.1

>prot_H-canaliculatus_M_contigs77049.1.1 ID=prot_H-canaliculatus_M_contigs77049.1.1|Name=mRNA_H-canaliculatus_M_contigs77049.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=128bp
GDQIGTVLYNRGLYAAMLAAEAAKTAQEIHGTADITPAMMRDGMEALEIT
EAKMTALGLPGFGPEFSVSCENHGGPGLVGMTQWDASAKTWSLINEFAAS
DMEVVQPLIDEDSAAYAAENNIASNCN*
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mRNA from alignment at H-canaliculatus_M_contigs77049:3..386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77049.1.1 ID=mRNA_H-canaliculatus_M_contigs77049.1.1|Name=mRNA_H-canaliculatus_M_contigs77049.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=384bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77049:3..386+ (Hapterophycus canaliculatus Oshoro7m male)
GGCGATCAAATCGGTACGGTTCTGTATAACCGCGGTTTGTATGCGGCGAT GTTGGCAGCAGAAGCCGCCAAAACAGCCCAAGAAATCCACGGCACAGCAG ACATCACACCTGCGATGATGCGTGACGGGATGGAAGCGTTGGAAATCACC GAAGCCAAGATGACCGCACTTGGTCTGCCGGGCTTTGGACCTGAGTTCAG CGTGTCTTGCGAAAACCACGGCGGCCCTGGCCTTGTTGGTATGACGCAAT GGGATGCATCCGCAAAAACATGGTCTTTGATCAATGAATTTGCAGCGTCT GACATGGAAGTTGTCCAGCCGTTGATCGATGAAGATTCCGCAGCCTACGC TGCAGAAAACAACATCGCTTCTAACTGCAACTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77049:3..386+

>mRNA_H-canaliculatus_M_contigs77049.1.1 ID=mRNA_H-canaliculatus_M_contigs77049.1.1|Name=mRNA_H-canaliculatus_M_contigs77049.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=384bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77049:3..386+ (Hapterophycus canaliculatus Oshoro7m male)
GGCGATCAAATCGGTACGGTTCTGTATAACCGCGGTTTGTATGCGGCGAT
GTTGGCAGCAGAAGCCGCCAAAACAGCCCAAGAAATCCACGGCACAGCAG
ACATCACACCTGCGATGATGCGTGACGGGATGGAAGCGTTGGAAATCACC
GAAGCCAAGATGACCGCACTTGGTCTGCCGGGCTTTGGACCTGAGTTCAG
CGTGTCTTGCGAAAACCACGGCGGCCCTGGCCTTGTTGGTATGACGCAAT
GGGATGCATCCGCAAAAACATGGTCTTTGATCAATGAATTTGCAGCGTCT
GACATGGAAGTTGTCCAGCCGTTGATCGATGAAGATTCCGCAGCCTACGC
TGCAGAAAACAACATCGCTTCTAACTGCAACTAA
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