mRNA_H-canaliculatus_M_contigs77048.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77048.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77048.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77048.1.1 vs.
Match: OmpA (family protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U6H5_9GAMM)

HSP 1 Score: 73.6 bits (179), Expect = 4.870e-12
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:  316 NASTQLALAENLAAKLANIQGETAQVDALAATLSEEIDASLQANGVDNVDVSIRDDNGIVINLPSGA 516
            NAS QL LAENLAAKLA++QG++    A A  L + ++A+LQANGV+ V VS+RDD  IV+NLPS A
Sbjct: 1546 NASDQLLLAENLAAKLASLQGQSQSEQANANALRDTLEANLQANGVEGVTVSVRDDGSIVVNLPSEA 1612
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BLAST of mRNA_H-canaliculatus_M_contigs77048.1.1 vs.
Match: Motility (protein B n=2 Tax=Granulosicoccus TaxID=437504 RepID=A0A2Z2NMH6_9GAMM)

HSP 1 Score: 72.8 bits (177), Expect = 8.940e-12
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:  319 ASTQLALAENLAAKLANIQGETAQVDALAATLSEEIDASLQANGVDNVDVSIRDDNGIVINLPSGA 516
            A+ QL+LAENLAAKLA +Q ET      AA+L + ++++L  NGVDNV V+IRDDNG+V+NLPS A
Sbjct: 1373 AAEQLSLAENLAAKLAGLQSETDSETQQAASLRDTLESNLTDNGVDNVTVTIRDDNGVVVNLPSQA 1438
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77048.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
OmpA4.870e-1259.70family protein n=1 Tax=Granulosicoccus sp. TaxID=1... [more]
Motility8.940e-1259.09protein B n=2 Tax=Granulosicoccus TaxID=437504 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77048contigH-canaliculatus_M_contigs77048:1..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size516
Hectar predicted targeting categoryother localisation
Exons1
Cds size504
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854108.5804856-CDS-H-canaliculatus_M_contigs77048:0..5041696854108.5804856-CDS-H-canaliculatus_M_contigs77048:0..504Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77048 1..504 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854108.5911415-UTR-H-canaliculatus_M_contigs77048:504..5161696854108.5911415-UTR-H-canaliculatus_M_contigs77048:504..516Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs77048 505..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77048.1.1prot_H-canaliculatus_M_contigs77048.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77048 1..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77048.1.1

>prot_H-canaliculatus_M_contigs77048.1.1 ID=prot_H-canaliculatus_M_contigs77048.1.1|Name=mRNA_H-canaliculatus_M_contigs77048.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=168bp
MAADTDALNEQLAAIAAEKTDLEAQLAESSEARSALEQQVAETQERVAQL
EEQIAQATASTESLESQLSELNAAKGDLEARLADSETGAEALRADLGTAE
NNASTQLALAENLAAKLANIQGETAQVDALAATLSEEIDASLQANGVDNV
DVSIRDDNGIVINLPSGA
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mRNA from alignment at H-canaliculatus_M_contigs77048:1..516-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77048.1.1 ID=mRNA_H-canaliculatus_M_contigs77048.1.1|Name=mRNA_H-canaliculatus_M_contigs77048.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=516bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77048:1..516- (Hapterophycus canaliculatus Oshoro7m male)
CTGCAGTCGAGTATGGCCGCTGATACTGATGCGCTAAATGAGCAATTAGC
AGCAATAGCTGCTGAAAAAACAGATCTTGAGGCTCAACTGGCTGAATCCA
GCGAGGCGCGCAGCGCGCTTGAACAACAAGTTGCTGAAACCCAGGAACGT
GTTGCACAGCTAGAGGAGCAAATAGCTCAGGCGACGGCTTCGACAGAGTC
ACTGGAAAGTCAGTTGAGCGAATTGAATGCTGCCAAGGGTGATCTCGAAG
CGCGTCTGGCCGATTCAGAAACAGGGGCGGAGGCGCTTAGAGCTGATCTG
GGTACGGCTGAGAATAACGCTAGTACTCAACTGGCGCTGGCTGAGAATCT
CGCAGCCAAATTGGCCAATATACAAGGCGAAACTGCTCAGGTTGACGCGC
TCGCAGCGACTCTCAGTGAAGAAATTGATGCAAGCTTGCAAGCAAATGGT
GTAGACAATGTCGATGTCAGTATCCGCGATGACAACGGTATCGTTATTAA
CCTGCCGAGTGGCGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77048:1..516-

>mRNA_H-canaliculatus_M_contigs77048.1.1 ID=mRNA_H-canaliculatus_M_contigs77048.1.1|Name=mRNA_H-canaliculatus_M_contigs77048.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=504bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77048:1..516- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCGCTGATACTGATGCGCTAAATGAGCAATTAGCAGCAATAGCTGC
TGAAAAAACAGATCTTGAGGCTCAACTGGCTGAATCCAGCGAGGCGCGCA
GCGCGCTTGAACAACAAGTTGCTGAAACCCAGGAACGTGTTGCACAGCTA
GAGGAGCAAATAGCTCAGGCGACGGCTTCGACAGAGTCACTGGAAAGTCA
GTTGAGCGAATTGAATGCTGCCAAGGGTGATCTCGAAGCGCGTCTGGCCG
ATTCAGAAACAGGGGCGGAGGCGCTTAGAGCTGATCTGGGTACGGCTGAG
AATAACGCTAGTACTCAACTGGCGCTGGCTGAGAATCTCGCAGCCAAATT
GGCCAATATACAAGGCGAAACTGCTCAGGTTGACGCGCTCGCAGCGACTC
TCAGTGAAGAAATTGATGCAAGCTTGCAAGCAAATGGTGTAGACAATGTC
GATGTCAGTATCCGCGATGACAACGGTATCGTTATTAACCTGCCGAGTGG
CGCG
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