mRNA_H-canaliculatus_M_contigs7703.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7703.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7703.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.430e-21
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            MA TDRDAL+ALY+AT+G +W+ N +WNT A LS+WHGV +N +GRV  L L ENNL+G
Sbjct:    1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQG 59
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BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: LRR-GTPase (of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.370e-20
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            MA TDRD L+ALY+ATDGP W N T+W+T+ADLS+WHGVK + +GRV +LSL  N LRG
Sbjct:    1 MAPTDRDVLVALYNATDGPNWKNKTNWDTNADLSDWHGVKADDQGRVVKLSLSANKLRG 59
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BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.470e-19
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            MAQTDRDAL+A+Y AT G KW+ + +W+TD+DL  WHGV +N +GRV +L L  NNL G
Sbjct:    1 MAQTDRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNNLEG 59
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BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 8.610e-19
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            MAQTDR+AL A Y+AT GP W +N +WN DAD SEW G++ N +GRV  LSL  NNL+G
Sbjct:   53 MAQTDREALGAFYNATGGPNWEHNNNWNADADPSEWLGIETNDQGRVVRLSLGSNNLQG 111
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BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.270e-18
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            M QTDRDAL+ALYDA  G  W NN +WN DADLS+WHG+ +N +GRV E+ L  NNL+G
Sbjct:   51 MPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANNLQG 109
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BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 2.080e-18
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            MAQTDR+AL+ALY A  G KW NN +WNT A LS+WHGV++N +GRV  L L +NNL+G
Sbjct:   25 MAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQG 83
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BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.300e-18
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            MAQTDRDAL+ALY AT G  W  + +W+TDADL  WHGV +N +GRV +L L +NNL G
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEG 59
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BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.010e-18
Identity = 38/59 (64.41%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            MAQTDR AL+ALY+AT G +W NN +W T A LS+WHGV++N +GRV +LSL  NNLRG
Sbjct:   71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRG 129
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE23_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.920e-18
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            MAQTDR+ L+ LY+ TDGP W+N T W + A LS+W+GVK NG+GRV +LSL +N L+G
Sbjct:    1 MAQTDREILVHLYNVTDGPNWSNKTEWCSGAALSDWYGVKANGQGRVVKLSLSKNGLKG 59
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Match: Hypothetical (leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL6_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.360e-17
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAELSLDENNLRG 177
            MAQTDR AL+ LY AT+G  W NN +W+T+++LS WHGVK+N +GRV +LSL  NNLRG
Sbjct:    1 MAQTDRAALVVLYVATNGTSWKNNDNWSTESNLSLWHGVKVNDQGRVVDLSLGYNNLRG 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7703.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized6.430e-2162.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LRR-GTPase6.370e-2066.10of the ROCO family n=1 Tax=Ectocarpus siliculosus ... [more]
Uncharacterized3.470e-1959.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized8.610e-1961.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.270e-1862.71leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Hypothetical2.080e-1862.71leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Uncharacterized2.300e-1861.02protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical4.010e-1864.41leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
Uncharacterized4.920e-1859.32protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.360e-1762.71leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7703contigH-canaliculatus_M_contigs7703:3923..4099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LL09
PFAMsLRRNT_2,LRR_1,LRR_6,LRR_8,XK-related
Model size177
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.08e-19
EggNOG OGsCOG4886@1|root,2R960@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size177
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854108.5025854-CDS-H-canaliculatus_M_contigs7703:3922..40991696854108.5025854-CDS-H-canaliculatus_M_contigs7703:3922..4099Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7703 3923..4099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7703.2.1prot_H-canaliculatus_M_contigs7703.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7703 3923..4099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7703.2.1

>prot_H-canaliculatus_M_contigs7703.2.1 ID=prot_H-canaliculatus_M_contigs7703.2.1|Name=mRNA_H-canaliculatus_M_contigs7703.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=59bp
MAQTDRDALLALYDATDGPKWTNNTSWNTDADLSEWHGVKLNGEGRVAEL
SLDENNLRG
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mRNA from alignment at H-canaliculatus_M_contigs7703:3923..4099-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7703.2.1 ID=mRNA_H-canaliculatus_M_contigs7703.2.1|Name=mRNA_H-canaliculatus_M_contigs7703.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=177bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7703:3923..4099- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTCAGACCGACCGCGACGCACTGCTGGCCCTATATGACGCAACCGA
CGGTCCTAAGTGGACGAACAACACCAGCTGGAACACAGATGCCGATCTCT
CGGAGTGGCATGGGGTCAAACTCAACGGCGAGGGCCGCGTGGCGGAGCTA
TCGCTGGACGAGAACAACCTCCGAGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7703:3923..4099-

>mRNA_H-canaliculatus_M_contigs7703.2.1 ID=mRNA_H-canaliculatus_M_contigs7703.2.1|Name=mRNA_H-canaliculatus_M_contigs7703.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=177bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7703:3923..4099- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTCAGACCGACCGCGACGCACTGCTGGCCCTATATGACGCAACCGA
CGGTCCTAAGTGGACGAACAACACCAGCTGGAACACAGATGCCGATCTCT
CGGAGTGGCATGGGGTCAAACTCAACGGCGAGGGCCGCGTGGCGGAGCTA
TCGCTGGACGAGAACAACCTCCGAGGT
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