mRNA_H-canaliculatus_M_contigs7703.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7703.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7703.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7703.1.1 vs.
Match: Origin-binding (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL23_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 3.460e-31
Identity = 56/66 (84.85%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    1 KDELFDVNQYWGKYKFIGYTSTVTVSLDFTEPVYRVYVFPNKHAACPREALQGAGRSRDVTTGQVI 198
            KDELFDVNQYWGKYKF GYTSTVTVSLDF EPVYRVY+FPNKH+  PRE LQG+GRSRDV TG+VI
Sbjct:  176 KDELFDVNQYWGKYKFTGYTSTVTVSLDFAEPVYRVYIFPNKHSFRPREGLQGSGRSRDVITGEVI 241
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BLAST of mRNA_H-canaliculatus_M_contigs7703.1.1 vs.
Match: Herpes_ori_bp (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K438_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.170e-12
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    7 ELFDVNQYWGKYKFIGYTSTVTVSLDFTEPVYRVYVFPNKHAACPREALQGAGRSRDVTTGQVI 198
            E+ DV+ +W KYK IG TST+TVS+D+T P+ RVY+ P++    PR+  Q   R R++T+G V+
Sbjct:  589 EIADVSAHWPKYKLIGLTSTITVSVDYTGPIDRVYISPSQRGCGPRDMNQMKSRFRNITSGIVV 652
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7703.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Origin-binding3.460e-3184.85protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Herpes_ori_bp6.170e-1246.88domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7703contigH-canaliculatus_M_contigs7703:205..402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854108.474488-CDS-H-canaliculatus_M_contigs7703:204..4021696854108.474488-CDS-H-canaliculatus_M_contigs7703:204..402Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7703 205..402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7703.1.1prot_H-canaliculatus_M_contigs7703.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7703 205..402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7703.1.1

>prot_H-canaliculatus_M_contigs7703.1.1 ID=prot_H-canaliculatus_M_contigs7703.1.1|Name=mRNA_H-canaliculatus_M_contigs7703.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=66bp
KDELFDVNQYWGKYKFIGYTSTVTVSLDFTEPVYRVYVFPNKHAACPREA
LQGAGRSRDVTTGQVI
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mRNA from alignment at H-canaliculatus_M_contigs7703:205..402-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7703.1.1 ID=mRNA_H-canaliculatus_M_contigs7703.1.1|Name=mRNA_H-canaliculatus_M_contigs7703.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7703:205..402- (Hapterophycus canaliculatus Oshoro7m male)
AAGGACGAGCTGTTCGACGTCAACCAGTACTGGGGAAAGTACAAGTTCAT
TGGCTATACGAGTACAGTGACAGTTTCACTGGACTTCACCGAGCCCGTCT
ACCGGGTGTACGTGTTCCCCAACAAGCACGCGGCGTGCCCACGCGAGGCG
TTGCAGGGAGCCGGCAGGTCGAGGGATGTCACAACGGGGCAAGTCATC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7703:205..402-

>mRNA_H-canaliculatus_M_contigs7703.1.1 ID=mRNA_H-canaliculatus_M_contigs7703.1.1|Name=mRNA_H-canaliculatus_M_contigs7703.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7703:205..402- (Hapterophycus canaliculatus Oshoro7m male)
AAGGACGAGCTGTTCGACGTCAACCAGTACTGGGGAAAGTACAAGTTCAT
TGGCTATACGAGTACAGTGACAGTTTCACTGGACTTCACCGAGCCCGTCT
ACCGGGTGTACGTGTTCCCCAACAAGCACGCGGCGTGCCCACGCGAGGCG
TTGCAGGGAGCCGGCAGGTCGAGGGATGTCACAACGGGGCAAGTCATC
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