mRNA_H-canaliculatus_M_contigs77026.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs77026.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs77026.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIA4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 8.790e-28
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGFKV 165
            F RFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGF V
Sbjct:  726 FPRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGFMV 780

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Dynein (heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN30_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 4.170e-27
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGF 159
            F RFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGF
Sbjct: 1221 FPRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGF 1273

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQA3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.560e-21
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAE-HDIFGFK 162
            F RF+FLSNDELLEILSQTRDP AVQPHMSKCFDAIKSI+FGD  A  HDI+GF+
Sbjct:  367 FPRFYFLSNDELLEILSQTRDPHAVQPHMSKCFDAIKSIKFGDTRATAHDIYGFE 421

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S485_9ARCH)

HSP 1 Score: 90.9 bits (224), Expect = 6.110e-20
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGF 159
            F RF+FLSNDELLEI+SQTRDP AVQPHM KCFDAIK I+FG+G   HDI GF
Sbjct:  186 FPRFYFLSNDELLEIMSQTRDPHAVQPHMGKCFDAIKRIKFGEGRQSHDISGF 238

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Phycisphaeraceae bacterium TMED231 TaxID=1986831 RepID=A0A1Z9QCI5_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 2.130e-19
Identity = 39/54 (72.22%), Postives = 48/54 (88.89%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGFK 162
            F RF+FLSND+LLEILSQTRDP AVQPHMSKCFDA+K I FG+GP +++I G++
Sbjct: 1001 FPRFYFLSNDDLLEILSQTRDPHAVQPHMSKCFDAVKRITFGEGPKKNEIQGYQ 1054

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Heavy (chain of dynein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MV52_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 1.380e-18
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGFKVG 168
            F RF+FLSNDELLEILSQT++ +AVQPHMSKCFD IKS+ FG+ P   DIFG K G
Sbjct: 1102 FPRFYFLSNDELLEILSQTKNVQAVQPHMSKCFDGIKSLDFGEDPKSTDIFGMKSG 1157

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Dynein (heavy chain 6, axonemal n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NNW5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.120e-17
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGP 135
            F RF+FLSNDELLEILSQTRDPRAVQPH+ KCFDA+KS+RF D P
Sbjct: 1185 FPRFYFLSNDELLEILSQTRDPRAVQPHLGKCFDAMKSVRFDDSP 1229

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Bromo (domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=A0A421GEV9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.120e-17
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGP 135
            F RF+FLSNDELLEILSQTRDPRAVQPH+ KCFDA+KS+RF D P
Sbjct: 1219 FPRFYFLSNDELLEILSQTRDPRAVQPHLGKCFDAMKSVRFDDSP 1263

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Bromo (domain-containing protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RXH9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.120e-17
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGP 135
            F RF+FLSNDELLEILSQTRDPRAVQPH+ KCFDA+KS+RF D P
Sbjct: 1305 FPRFYFLSNDELLEILSQTRDPRAVQPHLGKCFDAMKSVRFDDSP 1349

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BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVE7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.260e-17
Identity = 39/54 (72.22%), Postives = 40/54 (74.07%), Query Frame = 1

Query:    1 FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDIFGFK 162
            F RF+FLSNDELLEILSQTRDP AVQPHM KCFD IK I FG G A   I G  
Sbjct: 1151 FPRFYFLSNDELLEILSQTRDPHAVQPHMQKCFDGIKKIDFGTGKASKKILGIS 1204

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs77026.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	8.790e-28	96.36	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Dynein	4.170e-27	98.11	heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2...	[more]
Hypothetical	8.560e-21	81.82	protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=...	[more]
Uncharacterized	6.110e-20	77.36	protein (Fragment) n=1 Tax=archaeon TaxID=1906665 ...	[more]
Uncharacterized	2.130e-19	72.22	protein (Fragment) n=1 Tax=Phycisphaeraceae bacter...	[more]
Heavy	1.380e-18	71.43	chain of dynein n=1 Tax=Chloropicon primus TaxID=1...	[more]
Dynein	3.120e-17	82.22	heavy chain 6, axonemal n=1 Tax=Phytophthora fraga...	[more]
Bromo	3.120e-17	82.22	domain-containing protein n=19 Tax=Phytophthora Ta...	[more]
Bromo	3.120e-17	82.22	domain-containing protein n=8 Tax=Peronosporaceae ...	[more]
Hypothetical	4.260e-17	72.22	protein (Fragment) n=1 Tax=Triparma pacifica TaxID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs77026	contig	H-canaliculatus_M_contigs77026:303..476 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	0
Seed ortholog	2880.D7FN30
PFAMs	AAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,Dynein_heavy,MT
Model size	174
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10408
KEGG Pathway	ko05016,map05016
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	6.83e-28
EggNOG OGs	COG5245@1\|root,KOG3595@2759\|Eukaryota
Description	dynein light chain binding
Cds size	174
COG category	Z
BRITE	ko00000,ko00001,ko04812

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854108.4340234-CDS-H-canaliculatus_M_contigs77026:302..476	1696854108.4340234-CDS-H-canaliculatus_M_contigs77026:302..476	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs77026 303..476 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs77026.1.1	prot_H-canaliculatus_M_contigs77026.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs77026 303..476 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs77026:303..476-
coding sequence from alignment at H-canaliculatus_M_contigs77026:303..476-

protein sequence of mRNA_H-canaliculatus_M_contigs77026.1.1

>prot_H-canaliculatus_M_contigs77026.1.1 ID=prot_H-canaliculatus_M_contigs77026.1.1|Name=mRNA_H-canaliculatus_M_contigs77026.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=58bp
FVRFFFLSNDELLEILSQTRDPRAVQPHMSKCFDAIKSIRFGDGPAEHDI
FGFKVGC*

mRNA from alignment at H-canaliculatus_M_contigs77026:303..476-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs77026.1.1 ID=mRNA_H-canaliculatus_M_contigs77026.1.1|Name=mRNA_H-canaliculatus_M_contigs77026.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=174bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77026:303..476- (Hapterophycus canaliculatus Oshoro7m male)
TTTGTCAGGTTCTTCTTCCTCTCGAACGACGAGCTGTTAGAAATCCTCTC
GCAAACCAGGGATCCGCGAGCAGTCCAGCCCCATATGTCCAAGTGCTTCG
ACGCCATCAAAAGCATTCGTTTCGGGGATGGACCGGCCGAGCACGACATT
TTTGGTTTCAAGGTTGGTTGTTGA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77026:303..476-

>mRNA_H-canaliculatus_M_contigs77026.1.1 ID=mRNA_H-canaliculatus_M_contigs77026.1.1|Name=mRNA_H-canaliculatus_M_contigs77026.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=174bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77026:303..476- (Hapterophycus canaliculatus Oshoro7m male)
TTTGTCAGGTTCTTCTTCCTCTCGAACGACGAGCTGTTAGAAATCCTCTC
GCAAACCAGGGATCCGCGAGCAGTCCAGCCCCATATGTCCAAGTGCTTCG
ACGCCATCAAAAGCATTCGTTTCGGGGATGGACCGGCCGAGCACGACATT
TTTGGTTTCAAGGTTGGTTGTTGA