mRNA_H-canaliculatus_M_contigs76861.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76861.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76861.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAX3_TRICV)

HSP 1 Score: 76.3 bits (186), Expect = 6.800e-17
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 1
Query:    7 RWRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ 129
            RWRYL+IDEAHRIKNENSSLS+ VRL++TQFRLLITGTPLQ
Sbjct:   10 RWRYLIIDEAHRIKNENSSLSRVVRLMNTQFRLLITGTPLQ 50          
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.080e-16
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 1
Query:    7 RWRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ 129
            +WRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ
Sbjct:  339 KWRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ 379          
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VT78_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.030e-15
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1
Query:   10 WRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ 129
            W+YL+IDEAHRIKNENSSLS+ VR L+TQFRLLITGTPLQ
Sbjct:   38 WKYLMIDEAHRIKNENSSLSRAVRTLNTQFRLLITGTPLQ 77          
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LL85_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.180e-14
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query:   10 WRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ 129
            W+YL+IDEAHRIKNENSSLSK VRLL TQFR+LITGTPLQ
Sbjct:  306 WKYLIIDEAHRIKNENSSLSKAVRLLDTQFRILITGTPLQ 345          
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Helicase (ATP-binding domain-containing protein (Fragment) n=16 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0X781_9MAGN)

HSP 1 Score: 68.9 bits (167), Expect = 2.200e-14
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:   10 WRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ 129
            WRY++IDEAHRIKNENS LSKT+RL +T +RLLITGTPLQ
Sbjct:   35 WRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQ 74          
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK87_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.670e-14
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query:   10 WRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ 129
            W YL+IDEAHRIKNENSSLS+ VRL++T FRLLITGTPLQ
Sbjct:   54 WNYLIIDEAHRIKNENSSLSRAVRLINTDFRLLITGTPLQ 93          
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Helicase (ATP-binding domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ELZ6_OPUST)

HSP 1 Score: 70.5 bits (171), Expect = 4.110e-14
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 1
Query:   10 WRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQV 132
            WRY++IDEAHRIKNENS LSKT+RL  T +RLLITGTPLQV
Sbjct:  105 WRYIIIDEAHRIKNENSLLSKTMRLYKTNYRLLITGTPLQV 145          
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Chromatin-remodeling (complex ATPase chain-like protein n=2 Tax=Mesangiospermae TaxID=1437183 RepID=A0A2K3LGZ9_TRIPR)

HSP 1 Score: 70.5 bits (171), Expect = 4.560e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1
Query:   10 WRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQV 132
            WRY++IDEAHRIKNENS LSKT+RL +T +RLLITGTPLQV
Sbjct:  123 WRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQV 163          
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Putative (chromatin-remodeling complex ATPase chain (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IY48_NOCCA)

HSP 1 Score: 72.0 bits (175), Expect = 5.710e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:   10 WRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ 129
            WRY++IDEAHRIKNENS LSKT+RL ST FRLLITGTPLQ
Sbjct:   44 WRYIIIDEAHRIKNENSLLSKTMRLFSTNFRLLITGTPLQ 83          
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Match: Atpase-like (protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Q3_THAPS)

HSP 1 Score: 72.4 bits (176), Expect = 1.040e-13
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query:   10 WRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQ 129
            WRYL+IDEAHRIKNENSSLS+ VRLL+T FRLLITGTPLQ
Sbjct:  128 WRYLIIDEAHRIKNENSSLSQAVRLLNTGFRLLITGTPLQ 167          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76861.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Hypothetical6.800e-1787.80protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Uncharacterized1.080e-1697.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.030e-1585.00protein (Fragment) n=1 Tax=Pseudictyota dubia TaxI... [more]
Hypothetical2.180e-1487.50protein (Fragment) n=1 Tax=Leptocylindrus danicus ... [more]
Helicase2.200e-1480.00ATP-binding domain-containing protein (Fragment) n... [more]
Hypothetical2.670e-1482.50protein (Fragment) n=1 Tax=Proboscia inermis TaxID... [more]
Helicase4.110e-1480.49ATP-binding domain-containing protein n=1 Tax=Opun... [more]
Chromatin-remodeling4.560e-1480.49complex ATPase chain-like protein n=2 Tax=Mesangio... [more]
Putative5.710e-1485.00chromatin-remodeling complex ATPase chain (Fragmen... [more]
Atpase-like1.040e-1387.50protein (Fragment) n=1 Tax=Thalassiosira pseudonan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76861contigH-canaliculatus_M_contigs76861:31..162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps12403
PFAMsHelicase_C,SLIDE,SNF2_N
Model size132
Max annot lvl2836|Bacillariophyta
KEGG koko:K11654
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.7e-14
EggNOG OGsCOG0553@1|root,KOG0385@2759|Eukaryota,2XE4Y@2836|Bacillariophyta
DescriptionSLIDE
Cds size132
COG categoryB
BRITEko00000,ko01000,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.6481073-CDS-H-canaliculatus_M_contigs76861:30..1621696854106.6481073-CDS-H-canaliculatus_M_contigs76861:30..162Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76861 31..162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76861.1.1prot_H-canaliculatus_M_contigs76861.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76861 31..162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76861.1.1

>prot_H-canaliculatus_M_contigs76861.1.1 ID=prot_H-canaliculatus_M_contigs76861.1.1|Name=mRNA_H-canaliculatus_M_contigs76861.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=44bp
LRRWRYLLIDEAHRIKNENSSLSKTVRLLSTQFRLLITGTPLQV
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mRNA from alignment at H-canaliculatus_M_contigs76861:31..162-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76861.1.1 ID=mRNA_H-canaliculatus_M_contigs76861.1.1|Name=mRNA_H-canaliculatus_M_contigs76861.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76861:31..162- (Hapterophycus canaliculatus Oshoro7m male)
TTGAGAAGGTGGCGCTATCTGCTGATCGACGAGGCCCACCGCATCAAGAA CGAGAACTCATCTCTGTCCAAGACGGTCAGGCTCCTGTCCACCCAGTTCC GCCTCCTCATCACGGGGACTCCCCTGCAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76861:31..162-

>mRNA_H-canaliculatus_M_contigs76861.1.1 ID=mRNA_H-canaliculatus_M_contigs76861.1.1|Name=mRNA_H-canaliculatus_M_contigs76861.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76861:31..162- (Hapterophycus canaliculatus Oshoro7m male)
TTGAGAAGGTGGCGCTATCTGCTGATCGACGAGGCCCACCGCATCAAGAA
CGAGAACTCATCTCTGTCCAAGACGGTCAGGCTCCTGTCCACCCAGTTCC
GCCTCCTCATCACGGGGACTCCCCTGCAGGTA
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