mRNA_H-canaliculatus_M_contigs7676.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: G-patch (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV1_ECTSI) HSP 1 Score: 235 bits (600), Expect = 7.350e-73 Identity = 170/311 (54.66%), Postives = 191/311 (61.41%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHLKADGDAGRSRKQNTANKSKKSKPGEQASNRRTSGGG-----------VFNFLNTTMNTSMNKGKATAAAGGVDGGGPSARSSLLAGRRIRPVLDAVSSSFSSSXS-------AVGGAVAAGTHPLRKSGVFADKKKSGGGSAVAFASA------MSQSELRSHLVGAREAEVTLAAKIDRLQETIARNSERDPRTAAQARQKLDEVRMQVKEVRASRDRAETTLQNRDLGGGSXXXXXXXXXXXXSRKKGGMFSF 864
DAY+FGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPER LDHL+ D G ++ K +FNFLN TM+ SM+K KA +G +S L G+RIRP+ DA +S+SSS + A A A H LRKSGVF DKK+ GG MSQ+ELRSHLVGAREAE TLAAKI RL+ETI+RN E DPRTAAQARQKL +V Q KEVR SR RAE L+NR GGG XXXXXXXX K G+FSF
Sbjct: 23 DAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMSKRKA-------EGXXXXXXASPLPGQRIRPLFDAGGASYSSSAATSTSIPTATTAAGAGTAHALRKSGVFPDKKRDGGXXXXXXXXXXXXXXRMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRGGGGGKXXXXXXXX-------KAGLFSF 319
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: Zinc (finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE) HSP 1 Score: 213 bits (541), Expect = 8.970e-61 Identity = 148/285 (51.93%), Postives = 166/285 (58.25%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHLKADGDAGRSRKQNTANKSKKSKPGE-------------------QASNRRTSGGGVFNFLNTTMNTSMNKGKATAAAGGVDGGGPSARSSLLAGRRIRPVLDAVSSSFSSSXSAVGGAVAAGT-HPLRKSGVFADKKKSGGGSAVA------FASAMSQSELRSHLVGAREAEVTLAAKIDRLQETIARNSERDPRTAAQARQKLDEVRMQVKEVRASRDRAETTLQNR 780
DAY+FGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPER LDHL+ D G KS +S G+ +FNFLN TM+ SM K L + +SS S+S A AGT HPLRKSGV +D + GGG+ V A+ MSQ+ELRSHLVGAREAE TLAAKI RL+ETI+RN E DPRTAAQARQKL +V Q KEVR SR RAE L+NR
Sbjct: 358 DAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGG--------GKSARSVGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMRKXXXXXXXXXXXXXXXXXXXXRLLFDAGGDSYPSCASSSSTSIPTATTATGAGTAHPLRKSGVLSDTNRDGGGAGVGRAGVGGAAARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENR 634
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: Uncharacterized (protein n=14 Tax=Paniceae TaxID=147428 RepID=K3YRR6_SETIT) HSP 1 Score: 78.6 bits (192), Expect = 1.030e-12 Identity = 50/127 (39.37%), Postives = 70/127 (55.12%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHL----KADGDAGRSRKQNTANKSKKSKP-GEQASNRRTSGG--GVFNFLNTTM-NTSMNKGKATAAAGGVDG 360
D IF WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP + +LDH +ADG G +K++ K K+ K EQA + VF+F+N+ + N M +G A G G
Sbjct: 294 DTVIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALAASEADGSVGSGKKRSRGGKRKREKKFAEQARAAKAEEAERSVFSFINSHLVNQDMPEGSAIKVKKGASG 420
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: Zinc (finger CCCH domain-containing protein 18 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6ETS4_MAIZE) HSP 1 Score: 76.6 bits (187), Expect = 2.230e-12 Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHLKA--DGDAGRSRKQNTANKSKKSKP-GEQASNRRTSGG--GVFNFLNTTM 306
D IF WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP + +LDH A + D G +K++ K K+ K EQA + VFNF+N+ +
Sbjct: 119 DTMIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALASSEADGGSGKKRSRGGKRKREKKFAEQARAAKAEEAERSVFNFINSHL 224
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: Zinc (finger CCCH domain-containing protein 22 n=7 Tax=Andropogoneae TaxID=147429 RepID=B4FAY0_MAIZE) HSP 1 Score: 76.6 bits (187), Expect = 4.560e-12 Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHLKA--DGDAGRSRKQNTANKSKKSKP-GEQASNRRTSGG--GVFNFLNTTM 306
D IF WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP + +LDH A + D G +K++ K K+ K EQA + VFNF+N+ +
Sbjct: 293 DTMIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALASSEADGGSGKKRSRGGKRKREKKFAEQARAAKAEEAERSVFNFINSHL 398
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IDD7_BRADI) HSP 1 Score: 73.9 bits (180), Expect = 3.710e-11 Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHL-----KADGDA-GRSRKQNTANKSKKSK 237
+ IF WEQHT+G S+MM RMGYR G GLG QG+ P+P++VLP + +LDH K DG + GR +K++ K K+ K
Sbjct: 295 ETVIFAKWEQHTRGVASKMMARMGYREGMGLGVSGQGMVDPIPVKVLPPKQSLDHAVAATTKEDGKSIGRDKKRSRGGKRKRDK 378
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: Zinc (finger CCCH domain-containing protein 18 n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6RNK1_PANMI) HSP 1 Score: 73.6 bits (179), Expect = 4.750e-11 Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHLKADGDAGRS----RKQNTANKSKKSKP-GEQ--ASNRRTSGGGVFNFLNTTM 306
D IF WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP + +LDH A +AG S +K++ K K+ K EQ A+ + VF+F+N+ +
Sbjct: 294 DTVIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALAASEAGGSIGSGKKRSRGGKRKREKKFAEQVRAAKAEEAERSVFSFINSHL 401
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UY15_9POAL) HSP 1 Score: 72.4 bits (176), Expect = 1.210e-10 Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHLKADGDA----GRSRKQNTANKSKKSKP-GEQASNRRTSGG--GVFNFLNTTM 306
D IF WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP + +LDH A +A G +K++ K K+ K EQA + VF+F+N+ +
Sbjct: 294 DTVIFAKWEHHTRGVASKMMAKMGYREGMGLGLSGQGMLDPIPVKVLPPKQSLDHAFATNEANEGTGSGKKRSRGGKRKRDKKFAEQARAAKAEEAERSVFSFINSHL 401
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: G-patch (domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VUV8_9FUNG) HSP 1 Score: 71.6 bits (174), Expect = 1.550e-10 Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHLKADGDAGRSRKQNTANKS---------KKSKPGEQASN-RRTSGGGVFNFLNTTMN 309
D FGDWE HTKG GSR+M +MGYR G GLG+ +GI RPV +R+L L H +G RK+ + S K+ K G A + S VF+FLN ++N
Sbjct: 147 DGTPFGDWEAHTKGIGSRLMLKMGYRMGSGLGRHAEGIVRPVEVRILSSGKGLGH------SGMKRKRTSTPHSGSGASTPGRKRGKTGSDAGSISSASASTVFDFLNGSLN 252
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Match: Uncharacterized (protein n=9 Tax=Triticinae TaxID=1648030 RepID=A0A3B6QMU4_WHEAT) HSP 1 Score: 71.6 bits (174), Expect = 2.220e-10 Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 4 DAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERCALDHLKA--DGDAGRS 198
+ IF WEQHT+G S+MM +MGYR G GLG QG+ P+P++VLP + +LDH A G+ GRS
Sbjct: 296 ETVIFAKWEQHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPAKQSLDHAVAATTGEDGRS 362 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7676.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7676.1.1 >prot_H-canaliculatus_M_contigs7676.1.1 ID=prot_H-canaliculatus_M_contigs7676.1.1|Name=mRNA_H-canaliculatus_M_contigs7676.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=289bp MDAYIFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPEback to top mRNA from alignment at H-canaliculatus_M_contigs7676:25..2455+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7676.1.1 ID=mRNA_H-canaliculatus_M_contigs7676.1.1|Name=mRNA_H-canaliculatus_M_contigs7676.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7676:25..2455+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7676:25..2455+ >mRNA_H-canaliculatus_M_contigs7676.1.1 ID=mRNA_H-canaliculatus_M_contigs7676.1.1|Name=mRNA_H-canaliculatus_M_contigs7676.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=867bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7676:25..2455+ (Hapterophycus canaliculatus Oshoro7m male)back to top |