mRNA_H-canaliculatus_M_contigs76746.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76746.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76746.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76746.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76746contigH-canaliculatus_M_contigs76746:44..520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1265313.HRUBRA_02135
PFAMsSulfotransfer_3,TPR_16,TPR_19,TPR_8
Model size477
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000218
EggNOG OGsCOG0457@1|root,COG0457@2|Bacteria,1MVMG@1224|Proteobacteria,1RU5N@1236|Gammaproteobacteria,1J8CG@118884|unclassified Gammaproteobacteria
DescriptionSulfotransferase domain
Cds size477
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.9753628-CDS-H-canaliculatus_M_contigs76746:43..5201696854105.9753628-CDS-H-canaliculatus_M_contigs76746:43..520Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76746 44..520 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76746.1.1prot_H-canaliculatus_M_contigs76746.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76746 44..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76746.1.1

>prot_H-canaliculatus_M_contigs76746.1.1 ID=prot_H-canaliculatus_M_contigs76746.1.1|Name=mRNA_H-canaliculatus_M_contigs76746.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=159bp
ELQNYEACVEDTSIVIEQGESDDGAETIHAQSLHHCGRTEESIEFVKSRL
LHGKYQAEWHCWLGAVYSEMGDYRSADEALKAATKLNPEIAEAWIHIASL
GFHTGDLSASKQAIARAIEFNADEPLVVQCQSIIAHQEGRYEDAIRLNSE
LLELSEDDI
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mRNA from alignment at H-canaliculatus_M_contigs76746:44..520-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76746.1.1 ID=mRNA_H-canaliculatus_M_contigs76746.1.1|Name=mRNA_H-canaliculatus_M_contigs76746.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=477bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76746:44..520- (Hapterophycus canaliculatus Oshoro7m male)
GAACTTCAAAACTATGAAGCATGCGTCGAAGACACATCGATCGTGATTGA
ACAGGGCGAGAGTGACGACGGAGCCGAGACGATCCATGCGCAGTCATTGC
ATCACTGCGGTCGGACCGAAGAATCAATCGAGTTTGTCAAATCTCGGCTC
CTTCATGGGAAGTACCAAGCCGAATGGCATTGCTGGCTAGGCGCGGTCTA
CTCGGAAATGGGTGACTACCGTAGCGCCGATGAGGCCTTGAAGGCCGCGA
CCAAGCTGAATCCGGAGATTGCCGAAGCGTGGATTCATATCGCCAGTCTT
GGTTTCCATACCGGCGATTTATCAGCTTCAAAACAAGCGATTGCTCGGGC
GATCGAGTTCAACGCGGACGAGCCTCTCGTTGTTCAGTGCCAGTCCATCA
TCGCTCACCAAGAAGGTCGCTACGAGGATGCCATTCGATTGAACAGTGAA
CTGCTTGAACTCAGCGAAGATGACATC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76746:44..520-

>mRNA_H-canaliculatus_M_contigs76746.1.1 ID=mRNA_H-canaliculatus_M_contigs76746.1.1|Name=mRNA_H-canaliculatus_M_contigs76746.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=477bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76746:44..520- (Hapterophycus canaliculatus Oshoro7m male)
GAACTTCAAAACTATGAAGCATGCGTCGAAGACACATCGATCGTGATTGA
ACAGGGCGAGAGTGACGACGGAGCCGAGACGATCCATGCGCAGTCATTGC
ATCACTGCGGTCGGACCGAAGAATCAATCGAGTTTGTCAAATCTCGGCTC
CTTCATGGGAAGTACCAAGCCGAATGGCATTGCTGGCTAGGCGCGGTCTA
CTCGGAAATGGGTGACTACCGTAGCGCCGATGAGGCCTTGAAGGCCGCGA
CCAAGCTGAATCCGGAGATTGCCGAAGCGTGGATTCATATCGCCAGTCTT
GGTTTCCATACCGGCGATTTATCAGCTTCAAAACAAGCGATTGCTCGGGC
GATCGAGTTCAACGCGGACGAGCCTCTCGTTGTTCAGTGCCAGTCCATCA
TCGCTCACCAAGAAGGTCGCTACGAGGATGCCATTCGATTGAACAGTGAA
CTGCTTGAACTCAGCGAAGATGACATC
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