mRNA_H-canaliculatus_M_contigs7674.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7674.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7674.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK9_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.960e-10
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    7 CEGEGTYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKF 183
            CEG  TYF T++G EC+C     D    L  E  DC+YACS D++QTCGG +A  VY++
Sbjct:  338 CEGS-TYFATQYGRECWCGSAGADY--ALHGESTDCTYACSGDTDQTCGGFDAANVYRY 393
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: uncharacterized (protein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001D36010F)

HSP 1 Score: 63.2 bits (152), Expect = 4.120e-10
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   22 TYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKF 183
            TYFG EFG +CFC DD +  YD + A G  C++ C+A+S QTCGG  A+QVY+ 
Sbjct:  484 TYFGLEFGGQCFCGDDFE--YDPVAATGQ-CNHVCAANSSQTCGGSAALQVYRI 534
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.440e-9
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    4 LCEGE---GTYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKFT 186
            LCE      TYF T++G EC+C   +  V   L  E  DC+YAC+ D++QTCGG +A  VY++T
Sbjct:  660 LCEQTCLGNTYFATQYGRECWCG--SAGVEYALHGESTDCTYACAGDADQTCGGFDAANVYRYT 721
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 7.130e-9
Identity = 27/64 (42.19%), Postives = 36/64 (56.25%), Query Frame = 1 
Query:    4 LCEGE---GTYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKFT 186
            +CE E    TYFG ++G ECFC  ++ D+      E   C Y C  DSEQ CGG  A+ VY ++
Sbjct:  218 MCEAECSGNTYFGMQYGTECFCGGESTDLLQH--GESTACDYECPGDSEQVCGGFYAMSVYSYS 279
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 8.150e-9
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   22 TYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKFT 186
            TYF T++G EC+C     D    L  E  DC+Y C+ +++QTCGG +A  VY++T
Sbjct:   14 TYFATQYGRECWCGSAGMDY--ALHGESTDCTYGCAGNADQTCGGFDAANVYRYT 66
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD8_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.270e-8
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    4 LCEGE---GTYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKFT 186
            +CE E    TYFG ++G ECFC   + D+ +    E + C+Y C  DS+Q CGG  A+ VY ++
Sbjct:  406 ICEAECTGNTYFGLQYGRECFCGGSSTDLLEH--GESSACNYECPGDSDQVCGGFYAMSVYSYS 467
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Kretzschmaria deusta TaxID=110526 RepID=A0A1W5X9Y9_9PEZI)

HSP 1 Score: 58.5 bits (140), Expect = 1.760e-8
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    4 LCEGEGTYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKFT 186
             CEG  TYFGTE+G EC+C D+  +    + A   +CS AC+ D+ Q CG  N + VY+ T
Sbjct:  957 FCEGF-TYFGTEYGAECYCGDEFGEG--SVVAPSGECSMACNGDATQLCGAGNRLSVYELT 1014
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Fungi TaxID=4751 RepID=A0A1V1T7Y9_9FUNG)

HSP 1 Score: 58.5 bits (140), Expect = 1.760e-8
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:    4 LCEGEGTYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKFT 186
             CEG  TYFGTE+G EC+C DD  +    + +  + CS AC+ D+ Q CG  N + VY+ T
Sbjct:  950 FCEGF-TYFGTEYGAECYCGDDFGEG--SVASPSSQCSMACNGDATQLCGAGNRLSVYELT 1007
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: WSC (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD7_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.330e-8
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 ALCEGEGTYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKFT 186
            A C G  TYFG ++G ECFC   + D+ +    E + C+Y C  DS+Q CGG  A+ VY ++
Sbjct:  333 AKCRGN-TYFGLQYGRECFCGGSSTDLLEH--GESSACNYECPGDSDQVCGGFYAMSVYSYS 391
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BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.400e-8
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   22 TYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTCGGKNAIQVYKFT 186
            TYF T++G EC+C     D    +  E   C+YACS D++QTCGG +A  VY++T
Sbjct:  507 TYFATQYGSECWCGSAGADY--AVHGESTICTYACSGDADQTCGGYDAANVYRYT 559
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7674.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.960e-1049.15protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
uncharacterized4.120e-1053.70protein n=1 Tax=Passalora fulva TaxID=5499 RepID=U... [more]
Uncharacterized1.440e-945.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized7.130e-942.19protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.150e-943.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.270e-840.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
WSC1.760e-844.26domain-containing protein n=1 Tax=Kretzschmaria de... [more]
Uncharacterized1.760e-844.26protein n=3 Tax=Fungi TaxID=4751 RepID=A0A1V1T7Y9_... [more]
WSC2.330e-841.94domain containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized2.400e-845.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7674contigH-canaliculatus_M_contigs7674:2919..4053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LC73
PFAMsWSC
Model size186
Max annot lvl2759|Eukaryota
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.97e-12
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
Descriptionprotein xylosyltransferase activity
Cds size186
COG categoryU
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.9283354-CDS-H-canaliculatus_M_contigs7674:2918..30531696854105.9283354-CDS-H-canaliculatus_M_contigs7674:2918..3053Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7674 2919..3053 -
1696854105.9400485-CDS-H-canaliculatus_M_contigs7674:4002..40531696854105.9400485-CDS-H-canaliculatus_M_contigs7674:4002..4053Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7674 4003..4053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7674.1.1prot_H-canaliculatus_M_contigs7674.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7674 2919..4053 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7674.1.1

>prot_H-canaliculatus_M_contigs7674.1.1 ID=prot_H-canaliculatus_M_contigs7674.1.1|Name=mRNA_H-canaliculatus_M_contigs7674.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=62bp
ALCEGEGTYFGTEFGYECFCSDDTKDVYDRLTAEGADCSYACSADSEQTC
GGKNAIQVYKFT
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mRNA from alignment at H-canaliculatus_M_contigs7674:2919..4053-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7674.1.1 ID=mRNA_H-canaliculatus_M_contigs7674.1.1|Name=mRNA_H-canaliculatus_M_contigs7674.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7674:2919..4053- (Hapterophycus canaliculatus Oshoro7m male)
GCCCTGTGCGAGGGCGAAGGAACCTACTTCGGAACCGAGTTCGGTTACGA
GGTGAGAGCATCGTGTTTACGCTGACCCCCATTGTTATTGGCTGTGGTTG
GTTGCGGTGGTGGGCGGGTGGCGCTCTCTTCAATGCCTCGCCTGTCCCGC
CCTCCCACCAGCCCGACTGCAACCCGACCATGTCCGAATTGAAGGTGCAG
ATGCACGTTCACGTCCAGGCGAGGGGGAACGGAGTCGAAAACAAACACCA
AGTCATGAGGGTCGCAAGAAGTACCATGGCTACGTGGCTAGGGATTTGCC
TCGACACCATGGTACCAGAAGTATGAAGTAGTTCTTGTGACGCCGAAGTA
GGGTGGCACGAAAATACGCCGAAGTAAGGGGGGTGTTTTTCGCAACGAGA
TGAGGGGCCGTGGTGCGTGCGCCTTCAACGATTTGCCCTTGGCAAGCAAC
ACCCGGGTCAAGCGAACGAGCCACACCTTTAACGAGAGTTGCGTGTTGAA
TTTAGAGTTGCGCGTTGAATTTGACGCCGTCAGAGATCGACTTGACCCTA
GGAAAGCGCCGGCGCGGTCTACTTTTCACCGCGTGGATGTTTTGGAGCTT
ATTTTGCGCTCTCGCCGATGGCAACCCCTGCAAGGGCTACGGCGTGCCAC
CTAGGAAGATGCAGCGTGCCTAAACGAGGAGCCTTTTTGGTGGCGATGCG
GTGTGAAACACGATCGCCACAGCAAAATCGCACCAGATATATGCCGCGCC
CGTTTGGGCACACACATACGCGTGAAGGCACCTCAAGGTCAAGTCCCCCG
ACACTTGTGAGGGCAGCGGGGTTGACCGCACCGTTGTGCTCTTTCCAACT
TCCTCGCCTGCCTTTTCAGACCCCCGAGTTCAAGGAGACGCCACGCTCAA
CACGTCTGTCCATCTGCCTGTCTGTCGGCTATGTGTCTGTCCGTGCCCCC
TTCCGTTCCCGAACGATCCTTCATGGCGCTGGACCGTACCGTGTGAGCAG
TGCTTCTGTTCCGATGACACGAAGGACGTCTACGACAGGCTGACAGCCGA
GGGGGCCGATTGCAGCTACGCCTGCTCGGCCGACTCCGAACAGACGTGCG
GAGGGAAGAACGCCATCCAAGTCTACAAGTTCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7674:2919..4053-

>mRNA_H-canaliculatus_M_contigs7674.1.1 ID=mRNA_H-canaliculatus_M_contigs7674.1.1|Name=mRNA_H-canaliculatus_M_contigs7674.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7674:2919..4053- (Hapterophycus canaliculatus Oshoro7m male)
GCCCTGTGCGAGGGCGAAGGAACCTACTTCGGAACCGAGTTCGGTTACGA
GTGCTTCTGTTCCGATGACACGAAGGACGTCTACGACAGGCTGACAGCCG
AGGGGGCCGATTGCAGCTACGCCTGCTCGGCCGACTCCGAACAGACGTGC
GGAGGGAAGAACGCCATCCAAGTCTACAAGTTCACC
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