mRNA_H-canaliculatus_M_contigs7673.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7673.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7673.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7673.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA6_9PHAE)

HSP 1 Score: 331 bits (848), Expect = 1.260e-100
Identity = 339/572 (59.27%), Postives = 373/572 (65.21%), Query Frame = 1 
Query:    1 APLGRRDENTRHLRVSPAPHAIERGDDEAAAAVFATPPALQSGRKSLASQPSDVLRASDAPSATRKEGRESSPSARQSATTPTPVVGPSPCGTPRSSS------------------PVLLSSPPPLKAATAPLNPPTATPASXSPLLAANPDAGSPRPAPSPSQDSAYCGHYILLVGWSESERVFIARDPALPSSSSSSSTPFAVAGANGREVGGNADPSAHVCIALTPEALDRARRSYGTDEDVLVVDLARSRKGGVAAGPLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-AEASGFKEWAWPDPAAWFAGQ-------AADGDGTSGRMAKQIESEGKEAREGMGGRREVVEGRRGAPRNGAAESAAKRLASLLSLAASGLRFPTVGDAYRGPRVPWGNGAVSGXXXXXXXXXXXXXXXXXXTDEEAEQ--ERWAVRIASTMFVEGGRRAVYTLEGMLQXXXXXXXXXXXXXXXGALTXXXXXXXXXXXXXXXXXXGRRAAXXXXXXXXXXXXXXXXLRDQLADVADAPGGAGAECCSMAMLTSPGSPVAPSRLTAAVVSPA 1632
            +PL  RD NT HLR+SPA      GDD    AVF TPPA +SGRK LA       RA        ++G E+     Q +  P PV    P  T   S                   P+L+ SPPPLKAA                 L + P +G  R A SP +DS+YCGHYILLVGWSE++RVFIARDPAL SS+ S +T  A  GA G       DP+AH CIALTPEALDRARRSYGTDEDVLV+DLARSRKGGV   PLAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AEASGFKEWAWPD AAWF+G        AAD DGT G  A              GG  + V GRRG P +GA ESAA+RLASLLSLAASGLRFPTVGDAYRGP + WG+GA  GXXXXXXXXXXXXXXXXXX         ERWAVR AS M +EGGRRAVYT+EG+  XXXXXXXXXXXXXXX A T    XXXXXXXXXXXXXX     X               LRDQLADVADAPGGAGAECCS+A+LT+PGSPV+P+R+   VVSPA
Sbjct:  299 SPLSARDANTGHLRLSPAV-----GDDGGDMAVFVTPPAPKSGRKYLAGDLGASSRAGGTAGVISQQGGENGRRDDQMSAEP-PVQSAMPSATGPVSXXXXXXXXXXXXXXXXXPPPILVGSPPPLKAAG----------------LVSPPASGGDRAASSP-KDSSYCGHYILLVGWSEADRVFIARDPALTSSTPSMAT--APGGAGG------GDPNAHACIALTPEALDRARRSYGTDEDVLVIDLARSRKGGVPTAPLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEASGFKEWAWPDRAAWFSGHHAAIVDSAADVDGTGGAGAS-------------GG--DKVVGRRGMPLSGA-ESAARRLASLLSLAASGLRFPTVGDAYRGPGILWGSGATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXERWAVRTASAMLLEGGRRAVYTMEGLXXXXXXXXXXXXXXXXXXANTMEGLXXXXXXXXXXXXXXXXXXXXAAYN-----------LRDQLADVADAPGGAGAECCSIAVLTAPGSPVSPARMP--VVSPA 810
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BLAST of mRNA_H-canaliculatus_M_contigs7673.1.1 vs.
Match: Chromosome (22 open reading frame 13, isoform CRA_c n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB31_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.780e-94
Identity = 294/424 (69.34%), Postives = 317/424 (74.76%), Query Frame = 1 
Query:  385 LAANPDAGSPRPAPSPSQDSAYCGHYILLVGWSESERVFIARDPALPSSSSSSSTPFAVAGANGREVGGNADPSAHVCIALTPEALDRARRSYGTDEDVLVVDLARSRKGGVAAGPLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-AEASGFKEWAWPDPAAWFAGQ-------AADGDGTSGRMAKQIESEGKEAREGMGGRREVVEGRRGAPRNGAAESAAKRLASLLSLAASGLRFPTVGDAYRGPRVPWGNGAVSGXXXXXXXXXXXXXXXXXXTDEEAEQERWAVRIASTMFVEGGRRAVYTLEGMLQXXXXXXXXXXXXXXXGALTXXXXXXXXXXXXXXXXXXGRRAAXXXXXXXXXXXXXXXXLRDQLADVADAPGGAGAECCSMAMLTSPGSPVAPSRLTAAVVSPA 1632
            L + P +G  R A SP +DS+YCGHYILLVGWSE++ VFIARDPALPSS+ S++T  A  GA G       DP+AH CIALTPEALDRARRSYGTDEDVLV+DLARSRKGGV   PLAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AEASGFKEWAWPD AAWF+G        AA+ DGT G               G  G  EVV GRRG P +GA ESAA+RLASLLSLAASGLRFPTVGDAYRGP V WGNGA  GXXXXXXXXXXXXXXXXXX     E  RWAVR+AS M +EGGRRAVYT+EG+  XXXXXXXXXXXXXXX A T    XXXXXXXXXXXXXX     X               LRDQLADVADAPGGAGAECCS+A+LTSPGSPV+P+RL   VVSPA
Sbjct:  128 LESPPASGGDRAA-SPPRDSSYCGHYILLVGWSEADGVFIARDPALPSSTPSTAT--APGGAGG------GDPNAHACIALTPEALDRARRSYGTDEDVLVIDLARSRKGGVPTAPLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEASGFKEWAWPDRAAWFSGHHAAVVDSAANVDGTGGA--------------GASGGDEVV-GRRGVPLSGA-ESAARRLASLLSLAASGLRFPTVGDAYRGPGVLWGNGATGGXXXXXXXXXXXXXXXXXXXXXXXE--RWAVRMASAMLLEGGRRAVYTMEGLXXXXXXXXXXXXXXXXXXANTMEGLXXXXXXXXXXXXXXXXXXXXAAYN-----------LRDQLADVADAPGGAGAECCSIAVLTSPGSPVSPARLP--VVSPA 511
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BLAST of mRNA_H-canaliculatus_M_contigs7673.1.1 vs.
Match: Guanylyl (cyclase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG64_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.120e-5
Identity = 41/114 (35.96%), Postives = 55/114 (48.25%), Query Frame = 1 
Query:  388 AANPDAGSPRPAPSPSQDSAYCGHYILLVGWSESER-----------VFIARDPALPSSSSSSSTPFAVAGANGREVGGNADPSAHVCIALTPEALDRARRSYGTDEDVLVVDL 696
            AA P+AG+  PA      ++Y GHY+LL+G+++               F+ARDPA+P                            HV IA T   LD ARRS+GTDED+LV+DL
Sbjct:  187 AAAPNAGALPPA-----QASYRGHYVLLLGYADDGEGXXXXXXXXXGAFVARDPAVPEE--------------------------HVLIAAT--VLDAARRSFGTDEDMLVIDL 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7673.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.260e-10059.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Chromosome2.780e-9469.3422 open reading frame 13, isoform CRA_c n=1 Tax=Ec... [more]
Guanylyl8.120e-535.96cyclase (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7673contigH-canaliculatus_M_contigs7673:221..1855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LB31
Preferred nameGUCD1
PFAMsGuanylate_cyc_2
Model size1635
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078,RC02809,RC02889
KEGG koko:K13811,ko:K21852
KEGG ReactionR00509,R00529,R04928,R04929
KEGG Pathwayko00230,ko00261,ko00450,ko00920,ko01100,ko01120,ko01130,map00230,map00261,map00450,map00920,map01100,map01120,map01130
KEGG ModuleM00176
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.56e-95
EggNOG OGsKOG4621@1|root,KOG4621@2759|Eukaryota
EC2.7.1.25,2.7.7.4
DescriptionGuanylylate cyclase
Cds size1635
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.8337607-CDS-H-canaliculatus_M_contigs7673:220..18551696854105.8337607-CDS-H-canaliculatus_M_contigs7673:220..1855Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7673 221..1855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7673.1.1prot_H-canaliculatus_M_contigs7673.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7673 221..1855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7673.1.1

>prot_H-canaliculatus_M_contigs7673.1.1 ID=prot_H-canaliculatus_M_contigs7673.1.1|Name=mRNA_H-canaliculatus_M_contigs7673.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=545bp
APLGRRDENTRHLRVSPAPHAIERGDDEAAAAVFATPPALQSGRKSLASQ
PSDVLRASDAPSATRKEGRESSPSARQSATTPTPVVGPSPCGTPRSSSPV
LLSSPPPLKAATAPLNPPTATPASPSPLLAANPDAGSPRPAPSPSQDSAY
CGHYILLVGWSESERVFIARDPALPSSSSSSSTPFAVAGANGREVGGNAD
PSAHVCIALTPEALDRARRSYGTDEDVLVVDLARSRKGGVAAGPLAAAAA
ATALAASAASSAAAASAMVGLLAMAAAAAAGAEASGFKEWAWPDPAAWFA
GQAADGDGTSGRMAKQIESEGKEAREGMGGRREVVEGRRGAPRNGAAESA
AKRLASLLSLAASGLRFPTVGDAYRGPRVPWGNGAVSGGGGGGGGSRGGG
NGGVGGTDEEAEQERWAVRIASTMFVEGGRRAVYTLEGMLQGGRRAAYTM
EGFLQGGALTMEGLLQGGAHTMEGLLQGGRRAAYTMEGLLEGGRRAAYNL
RDQLADVADAPGGAGAECCSMAMLTSPGSPVAPSRLTAAVVSPA*
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mRNA from alignment at H-canaliculatus_M_contigs7673:221..1855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7673.1.1 ID=mRNA_H-canaliculatus_M_contigs7673.1.1|Name=mRNA_H-canaliculatus_M_contigs7673.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1635bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7673:221..1855+ (Hapterophycus canaliculatus Oshoro7m male)
GCACCCCTGGGCAGGCGAGACGAAAACACGCGGCATCTCCGGGTGTCTCC
CGCGCCTCACGCGATAGAACGGGGTGATGACGAGGCGGCGGCGGCGGTGT
TTGCGACACCTCCCGCACTTCAGAGCGGGAGAAAATCCCTGGCGAGCCAG
CCCTCTGATGTCTTGCGGGCGAGCGACGCACCATCAGCCACCAGAAAGGA
AGGCCGAGAATCCTCGCCATCCGCCAGGCAATCGGCCACAACTCCCACCC
CTGTTGTTGGCCCTTCTCCCTGTGGCACTCCACGCTCGTCGTCGCCGGTA
CTGTTGTCGTCACCGCCCCCCCTCAAGGCCGCGACGGCCCCCCTGAACCC
TCCCACCGCGACCCCTGCTTCTCCCTCTCCTCTCCTTGCGGCGAACCCGG
ACGCCGGCAGTCCTCGCCCCGCCCCGTCGCCGTCTCAAGACTCTGCCTAC
TGCGGGCACTACATCCTCCTAGTCGGGTGGAGCGAGTCGGAGAGAGTCTT
CATCGCGAGGGACCCCGCACTCCCATCGTCGTCGTCGTCTTCGTCGACGC
CTTTCGCGGTTGCCGGCGCGAACGGCAGAGAAGTCGGCGGCAACGCCGAC
CCTTCCGCCCACGTGTGCATCGCGCTTACCCCGGAGGCGCTCGACAGGGC
ACGGCGCAGCTACGGCACGGACGAGGACGTTCTCGTGGTGGACCTCGCAC
GCAGCCGCAAGGGCGGGGTCGCAGCGGGCCCTCTCGCGGCCGCTGCGGCC
GCGACGGCGCTGGCGGCGTCGGCCGCGAGCTCGGCGGCGGCGGCTTCCGC
GATGGTCGGGCTGCTCGCGATGGCGGCCGCGGCCGCGGCGGGGGCCGAGG
CGTCCGGCTTCAAGGAGTGGGCGTGGCCAGACCCCGCGGCTTGGTTTGCC
GGACAGGCCGCGGACGGTGACGGCACCAGTGGCAGGATGGCAAAGCAAAT
TGAGAGTGAGGGGAAAGAGGCCCGAGAGGGAATGGGCGGGAGGAGGGAAG
TGGTCGAGGGGCGGCGGGGCGCGCCGCGTAACGGCGCCGCGGAGTCGGCG
GCGAAGAGGCTGGCGAGCCTGCTGTCGCTGGCAGCGAGCGGGCTGCGATT
CCCGACGGTCGGAGACGCCTACCGTGGTCCCCGGGTGCCGTGGGGGAACG
GAGCGGTGAGCGGCGGCGGCGGCGGCGGTGGCGGGAGCAGGGGCGGAGGT
AACGGCGGCGTCGGCGGGACAGACGAAGAGGCGGAGCAGGAGCGGTGGGC
CGTCCGCATTGCCAGCACGATGTTTGTTGAGGGCGGCAGGCGAGCGGTGT
ACACCCTGGAAGGCATGCTGCAGGGAGGAAGGCGGGCGGCCTACACCATG
GAAGGGTTCCTACAAGGAGGGGCCCTTACGATGGAAGGCTTGTTGCAGGG
GGGAGCCCACACCATGGAAGGCTTGCTCCAGGGAGGGAGAAGGGCGGCAT
ACACCATGGAAGGCTTGCTCGAGGGAGGCAGGAGGGCGGCTTACAACCTG
CGCGATCAACTGGCGGACGTGGCGGACGCCCCAGGCGGGGCAGGCGCCGA
GTGTTGTTCGATGGCGATGCTGACCTCTCCCGGATCGCCGGTGGCACCCT
CTCGGCTAACGGCGGCGGTTGTATCACCAGCGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7673:221..1855+

>mRNA_H-canaliculatus_M_contigs7673.1.1 ID=mRNA_H-canaliculatus_M_contigs7673.1.1|Name=mRNA_H-canaliculatus_M_contigs7673.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1635bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7673:221..1855+ (Hapterophycus canaliculatus Oshoro7m male)
GCACCCCTGGGCAGGCGAGACGAAAACACGCGGCATCTCCGGGTGTCTCC
CGCGCCTCACGCGATAGAACGGGGTGATGACGAGGCGGCGGCGGCGGTGT
TTGCGACACCTCCCGCACTTCAGAGCGGGAGAAAATCCCTGGCGAGCCAG
CCCTCTGATGTCTTGCGGGCGAGCGACGCACCATCAGCCACCAGAAAGGA
AGGCCGAGAATCCTCGCCATCCGCCAGGCAATCGGCCACAACTCCCACCC
CTGTTGTTGGCCCTTCTCCCTGTGGCACTCCACGCTCGTCGTCGCCGGTA
CTGTTGTCGTCACCGCCCCCCCTCAAGGCCGCGACGGCCCCCCTGAACCC
TCCCACCGCGACCCCTGCTTCTCCCTCTCCTCTCCTTGCGGCGAACCCGG
ACGCCGGCAGTCCTCGCCCCGCCCCGTCGCCGTCTCAAGACTCTGCCTAC
TGCGGGCACTACATCCTCCTAGTCGGGTGGAGCGAGTCGGAGAGAGTCTT
CATCGCGAGGGACCCCGCACTCCCATCGTCGTCGTCGTCTTCGTCGACGC
CTTTCGCGGTTGCCGGCGCGAACGGCAGAGAAGTCGGCGGCAACGCCGAC
CCTTCCGCCCACGTGTGCATCGCGCTTACCCCGGAGGCGCTCGACAGGGC
ACGGCGCAGCTACGGCACGGACGAGGACGTTCTCGTGGTGGACCTCGCAC
GCAGCCGCAAGGGCGGGGTCGCAGCGGGCCCTCTCGCGGCCGCTGCGGCC
GCGACGGCGCTGGCGGCGTCGGCCGCGAGCTCGGCGGCGGCGGCTTCCGC
GATGGTCGGGCTGCTCGCGATGGCGGCCGCGGCCGCGGCGGGGGCCGAGG
CGTCCGGCTTCAAGGAGTGGGCGTGGCCAGACCCCGCGGCTTGGTTTGCC
GGACAGGCCGCGGACGGTGACGGCACCAGTGGCAGGATGGCAAAGCAAAT
TGAGAGTGAGGGGAAAGAGGCCCGAGAGGGAATGGGCGGGAGGAGGGAAG
TGGTCGAGGGGCGGCGGGGCGCGCCGCGTAACGGCGCCGCGGAGTCGGCG
GCGAAGAGGCTGGCGAGCCTGCTGTCGCTGGCAGCGAGCGGGCTGCGATT
CCCGACGGTCGGAGACGCCTACCGTGGTCCCCGGGTGCCGTGGGGGAACG
GAGCGGTGAGCGGCGGCGGCGGCGGCGGTGGCGGGAGCAGGGGCGGAGGT
AACGGCGGCGTCGGCGGGACAGACGAAGAGGCGGAGCAGGAGCGGTGGGC
CGTCCGCATTGCCAGCACGATGTTTGTTGAGGGCGGCAGGCGAGCGGTGT
ACACCCTGGAAGGCATGCTGCAGGGAGGAAGGCGGGCGGCCTACACCATG
GAAGGGTTCCTACAAGGAGGGGCCCTTACGATGGAAGGCTTGTTGCAGGG
GGGAGCCCACACCATGGAAGGCTTGCTCCAGGGAGGGAGAAGGGCGGCAT
ACACCATGGAAGGCTTGCTCGAGGGAGGCAGGAGGGCGGCTTACAACCTG
CGCGATCAACTGGCGGACGTGGCGGACGCCCCAGGCGGGGCAGGCGCCGA
GTGTTGTTCGATGGCGATGCTGACCTCTCCCGGATCGCCGGTGGCACCCT
CTCGGCTAACGGCGGCGGTTGTATCACCAGCGTAG
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