mRNA_H-canaliculatus_M_contigs76714.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76714.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76714.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76714.1.1 vs.
Match: Importin (N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIB4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.310e-11
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 QEMSVAAIAATAVSAGESFLPYMAVTCGMLEPLMNLQEEKMLNV 132
            +EMSVAAIAATAVSAG+SFLPYMA TC +L P M LQEEKML++
Sbjct:  505 KEMSVAAIAATAVSAGQSFLPYMAPTCAVLGPFMTLQEEKMLSL 548
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76714.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Importin7.310e-1177.27N-terminal domain-containing protein n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76714contigH-canaliculatus_M_contigs76714:87..218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FQF7
PFAMsHEAT,HEAT_EZ,IBN_N,Vac14_Fab1_bd
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K20221
KEGG TC1.I.1
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000060,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0140104,GO:0140142
Exons1
Evalue2.29e-12
EggNOG OGsKOG2171@1|root,KOG2171@2759|Eukaryota
Descriptionribosomal protein import into nucleus
Cds size126
COG categoryS
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.6737459-CDS-H-canaliculatus_M_contigs76714:86..2121696854105.6737459-CDS-H-canaliculatus_M_contigs76714:86..212Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76714 87..212 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.690655-UTR-H-canaliculatus_M_contigs76714:212..2181696854105.690655-UTR-H-canaliculatus_M_contigs76714:212..218Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76714 213..218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76714.1.1prot_H-canaliculatus_M_contigs76714.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76714 87..212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76714.1.1

>prot_H-canaliculatus_M_contigs76714.1.1 ID=prot_H-canaliculatus_M_contigs76714.1.1|Name=mRNA_H-canaliculatus_M_contigs76714.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp
MSVAAIAATAVSAGESFLPYMAVTCGMLEPLMNLQEEKMLNV
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mRNA from alignment at H-canaliculatus_M_contigs76714:87..218-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76714.1.1 ID=mRNA_H-canaliculatus_M_contigs76714.1.1|Name=mRNA_H-canaliculatus_M_contigs76714.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76714:87..218- (Hapterophycus canaliculatus Oshoro7m male)
CAGGAGATGTCGGTTGCCGCGATCGCGGCCACGGCTGTGTCGGCGGGAGA
GAGCTTCCTGCCCTACATGGCCGTGACGTGCGGCATGCTCGAGCCGCTCA
TGAACTTGCAAGAGGAGAAGATGCTCAACGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76714:87..218-

>mRNA_H-canaliculatus_M_contigs76714.1.1 ID=mRNA_H-canaliculatus_M_contigs76714.1.1|Name=mRNA_H-canaliculatus_M_contigs76714.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76714:87..218- (Hapterophycus canaliculatus Oshoro7m male)
ATGTCGGTTGCCGCGATCGCGGCCACGGCTGTGTCGGCGGGAGAGAGCTT
CCTGCCCTACATGGCCGTGACGTGCGGCATGCTCGAGCCGCTCATGAACT
TGCAAGAGGAGAAGATGCTCAACGTG
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