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Homology
BLAST of mRNA_H-canaliculatus_M_contigs767.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ2_ECTSI) HSP 1 Score: 314 bits (805), Expect = 4.790e-100 Identity = 192/290 (66.21%), Postives = 226/290 (77.93%), Query Frame = 1
Query: 493 HHHQPE-------GLRELSSAITQVESKLSLDSSEAGQLREALKTLRSEKEAYLRERASNISRTEDVSREFDEMRRRVATMEDELGRRNGLLRRAEEGREEVQQKLSATARQLASGFRKEKERFSRETEAAEARQGERGTSIISAAAKHERDRGYRERLRTLSDGLASTQLQLSTLKSERETQKREAAKVREDLMIQIARLEAQLKRVGEGVEKERADMETVMLNLSNALSGVDVQLKQSAGMTPSREASRALRRAQEDFRRDQRRVTLLLEKQRQRYDTASSVVEDEAQ 1341
H HQ + GLRELS+AI +VE+KLSLDSSEA QLREAL+ LRSEKEAY+RE+ S +R E VSRE+D + RRVA E ELGRR+G LR+AE RE+ Q LS A+QLA+GF EKE+FSRE ++AEA+QG G + + AA KH+ DRGYRERLR LSDGLASTQLQL+TLKS R + R+DL Q+ARLEAQLKR G+G+EKE+ DME ++LNLSNALSGVD QL QSAGMTPSRE SRALRRA+EDFR +QRRV L LEKQRQRYD SSVVE+EAQ
Sbjct: 4 HQHQQQQSEAVDRGLRELSAAIVRVETKLSLDSSEASQLREALRMLRSEKEAYVREKTSTAARMEAVSREYDILNRRVAVAEAELGRRSGRLRKAEVDREKTQATLSVRAQQLATGFGMEKEKFSREMQSAEAQQGTGGPAAV-AAEKHKIDRGYRERLRVLSDGLASTQLQLATLKSNRSKLAALEVEARKDLTTQVARLEAQLKRAGDGIEKEKTDMEKLLLNLSNALSGVDFQLTQSAGMTPSRETSRALRRAKEDFRLNQRRVKLHLEKQRQRYDATSSVVEEEAQ 292
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 1341 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-06_009290.1 |
| Cds size | 1323 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696854105.3751497-UTR-H-canaliculatus_M_contigs767:6224..6242 | 1696854105.3751497-UTR-H-canaliculatus_M_contigs767:6224..6242 | Hapterophycus canaliculatus Oshoro7m male | UTR | H-canaliculatus_M_contigs767 6225..6242 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696854105.3907678-CDS-H-canaliculatus_M_contigs767:6242..6815 | 1696854105.3907678-CDS-H-canaliculatus_M_contigs767:6242..6815 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs767 6243..6815 + |
| 1696854105.4057086-CDS-H-canaliculatus_M_contigs767:6962..7102 | 1696854105.4057086-CDS-H-canaliculatus_M_contigs767:6962..7102 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs767 6963..7102 + |
| 1696854105.4187787-CDS-H-canaliculatus_M_contigs767:7704..7874 | 1696854105.4187787-CDS-H-canaliculatus_M_contigs767:7704..7874 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs767 7705..7874 + |
| 1696854105.4336-CDS-H-canaliculatus_M_contigs767:8798..8940 | 1696854105.4336-CDS-H-canaliculatus_M_contigs767:8798..8940 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs767 8799..8940 + |
| 1696854105.446858-CDS-H-canaliculatus_M_contigs767:9798..9949 | 1696854105.446858-CDS-H-canaliculatus_M_contigs767:9798..9949 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs767 9799..9949 + |
| 1696854105.4593964-CDS-H-canaliculatus_M_contigs767:10707..10781 | 1696854105.4593964-CDS-H-canaliculatus_M_contigs767:10707..10781 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs767 10708..10781 + |
| 1696854105.4705203-CDS-H-canaliculatus_M_contigs767:11425..11498 | 1696854105.4705203-CDS-H-canaliculatus_M_contigs767:11425..11498 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs767 11426..11498 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs767.2.1 >prot_H-canaliculatus_M_contigs767.2.1 ID=prot_H-canaliculatus_M_contigs767.2.1|Name=mRNA_H-canaliculatus_M_contigs767.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=441bp
MADSRYGLAFRTAHGERISSATSKPDGENILQRITTMASKRLPSPATATA
TATPSPPTPPSQHRTSTSPASPRLSSLPSNPIERFSGNHIPGKMEPAFIF
KIRSSGSLASTGFSKASADMPSMSSLAGRLVSDLRSRAFLPPGYKQQLRR
TASGLRQEHHHQPEGLRELSSAITQVESKLSLDSSEAGQLREALKTLRSE
KEAYLRERASNISRTEDVSREFDEMRRRVATMEDELGRRNGLLRRAEEGR
EEVQQKLSATARQLASGFRKEKERFSRETEAAEARQGERGTSIISAAAKH
ERDRGYRERLRTLSDGLASTQLQLSTLKSERETQKREAAKVREDLMIQIA
RLEAQLKRVGEGVEKERADMETVMLNLSNALSGVDVQLKQSAGMTPSREA
SRALRRAQEDFRRDQRRVTLLLEKQRQRYDTASSVVEDEAQ back to topmRNA from alignment at H-canaliculatus_M_contigs767:6225..11498+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_M_contigs767.2.1 ID=mRNA_H-canaliculatus_M_contigs767.2.1|Name=mRNA_H-canaliculatus_M_contigs767.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=5274bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs767:6225..11498+ (Hapterophycus canaliculatus Oshoro7m male)
CGTGCAGGGCTATGGGTGATGGCAGACTCTAGATACGGTCTCGCATTTCG
GACGGCTCACGGCGAGAGGATTTCATCTGCCACTTCAAAGCCAGACGGCG
AGAATATTCTGCAACGCATTACGACGATGGCGTCGAAACGATTGCCATCA
CCAGCAACAGCAACAGCAACAGCAACGCCGTCGCCACCTACCCCACCATC
ACAACACCGAACATCAACTTCGCCAGCTTCGCCACGTTTGTCTTCGCTGC
CTTCTAATCCCATCGAGAGATTCTCTGGGAATCACATACCAGGCAAGATG
GAGCCAGCCTTCATCTTCAAAATAAGATCATCGGGCTCCCTTGCCTCAAC
GGGCTTCTCAAAGGCTTCCGCCGATATGCCGTCAATGTCGTCTCTAGCGG
GCCGCCTTGTCTCGGACCTCCGTTCTCGAGCTTTCTTGCCGCCTGGGTAC
AAGCAGCAGCTCAGACGCACAGCTAGCGGATTGCGGCAGGAGCATCATCA
CCAGCCGGAGGGGCTGCGGGAGCTGAGTTCAGCCATCACGCAGGTAGAAT
CCAAGCTCAGCTTGGACAGCTCGGAGGCCGGTCAGCTCAGGGTGAGAGAA
CGAAGCCTCAACAGAGTAAACCGGAGGTGTAATCACAGTACATTGCAAAT
GAAGGTTACGATGTAACATACTTCGAAGTCACCAACCCCCCAGAACTAAG
AAACGATCTTACTTCGCTCTTTGCAATGGGTTCAACAGGAAGCCTTAAAA
ACGCTACGGTCGGAGAAGGAGGCCTATCTACGGGAGCGCGCCTCGAATAT
CTCACGGACGGAAGACGTCTCCCGCGAGTTCGACGAGATGCGGCGTAGGG
TGGCGACAATGGAAGATGAACTTGGCCGGTGCGCTCGCGTCTACCTTTTC
GTGCATTTCTCGATTGTGCAGTAACCAGGGTCAAGCCTTCGGGTTCTATC
GAAAACCGGAAGCCTTTACACGGTGTGGCCAGGAGGACCGAGGAGATCTT
TTAAGTGGCGTGACTACTGTATTATCGAGACTTTTGCAAGGTATCAGAGA
GGGCTCTATCACGCCATGAACCAGAGGCATTGCCGCCCCTCCTTCTCCCA
CCACGGGGCTGTCCCGTGCGGCATGCGGGAGACTCTCGACCGTGCAAACG
TGTCATCGGCTTTTGAAGAAGCGGCTTTGACACTTAAACAATTCTCCGGC
GCCGCCTTATCATCTCACGTGTTTTGCCCCGTTGATTATCTTGCATACCA
TTTTGAAGTCTGGAGACCCCGCGCAGCTTTGTCTTTGGTTTCAGAGTTCG
TTCAAATGTTGTTTTGAGAAGATCGCCTTCGTGGTTTTATGTCTTCGATC
AATGCACGCGCTTGCATCGGACCCTATGAGCTTTCCCCCATGCTCCCCTC
TTTTAGTCCTGCTTCGATACGCCCCTCATTTCTCACGCTGTTTAAGTCGG
TTTGTGTGTACCTTCCCTTCCTACTTGCAGGCGCAACGGGCTGCTTCGGA
GGGCGGAGGAGGGACGTGAGGAAGTGCAGCAAAAGCTTTCGGCGACAGCA
CGGCAGCTCGCCAGCGGCTTCCGGAAGGAGAAAGAACGGTTTTCTAGAGA
GACGGAAGCGGCCGAGGCTCGACAGGGAGAGAGAGGTACTTCAATAATCT
GTTGGTCGGGTGCAGGGACGTTTTTGGATTGTTCACGTGGGCTCCTTGGT
TCGCATAGCATCTGCATGAGCGCCTTTAGTTTCGTAGCCAGCACAAGTGT
CAACGTGGGTAAAACATGTCAGAGGTAAAAGATGGAGAACCGACACATTA
CATGTTGACGAACGGGCTCTCGAGCGACGGTGGGTCGACATAATTCCTCG
AACGACAAAAAATCGACGAACGAACGGAACGGAATAGAAACTAATTTTAT
ATAATTGGTTGAAGGCCGGGGTGAACAAGAAAGTGATGTGATAAAAAAGG
CTCGGGTGTTGCAATAGTGCGTGCAAGCAAAGTGCGTGCACACCACCATC
TCTACGTTGCTGGAGGAACGACTTTCAACATATTTTGCTAATGATGACTA
CTCCGCCGTACCACTGCGTGCGGAGGTTTTTTAGATGGCCACGCACGTTG
CATTGTCATCCAAGTTTGCGTGCGCCCTTCCGAACCCCGCCCAACCTGGC
ACGCATTACGTGTCCTCAGTTTTGTACCACGGAGCCGACGTCTGTCTATC
GGTCCGCTGATAGCACGGCTGATGAAAACTTCAAATCAGACGCCCACCAC
ACGCGCGCTACCATGTCCTCTCTCTCGATCCCGAGGCTCGACCCGTCCTT
CCGTCGTTCTCTGCGGTCTCCCTGTTCGGGGGCTGAGGGACAAAGATGAG
CAGGAGGCACAAGATTCGCGTAAAGCATGCTGTCCGTTTTTATCTTGCTG
CAGACGTTACCGTCCTTCCATCGAATCGCCCGGTGTTGATCGACGCCGAG
CTCAAGAAACAGCAGGGCACGCACGAGCTCAGGCGCACATCGGCAAAACC
ACGTATCATAAAAGACACCCTCGTCGGGCATTCTTTTGTGCGCCGCTAAC
CCGCTATCCCAGGGTCAGTGGCAGCGGCAGCAGCAAAGCACGAACGAGAC
CGTGGTTACCGCGAGCGCTTGCGCACCCTGTCCGACGGCCTGGCGTCCAC
CCAATTACAGCTCTCCACGCTCAAGTCCGAGCGGGAAACGCAGAAACGCG
AGGCGGCCAAAGTCAGGTGTGTATCATGCAGCCAGTAGAAGAGCACGTTT
TCGCATGCGGAGCCAAAAGGATTTGCGCTGTGGCCGAGGTGTGCCTTGTG
CCACCTTCAACAAACGAGCGCCGAACGCTTTCCTCCGCAAGAGAAGTGAT
TCCGGGAGGGGCAGTTCGTTTGCGTGAAGGGTATCTGGCACAATTGCTCG
TGGGCCGTGTCTGGTTCTCTGCTTCTCTTTTTGGGTGGAAATGAGTCCCC
TGTCCGCAAGAGAGATAACACAACAAAAGAAGCATCGTTTCCAACCTTCA
CTGTGGTAAAAAACCGTGAAGTGCTGATTGGGCTGCCCAGCAAACGTTTC
GTCGTTCGTTGCTGTCGCTCCCCCCATTCACGCGAAAGTCTCCGACACCG
CCACATCTCTCCTCGACTGCAGCGCACCACTCTCTCCTTAGCTCCTCTTT
TCGAATGAATTGCTTCCGCATTCCCGCAGCAACCGTTTTCTTTCGTATAA
ATCTGCCCTGTTGGAGGGAGTTGTCGTCCAAGCATCAGCTCCACGTTTCG
GCGGTATTGCTTGGCAGAGGAAGGGATGAGCCACAGTTTTGAGCATTGGG
CAGGGCACTCCTTCAGTCAACGCGCTGGCTTGTGCTGCAATGGCTGTTGC
GCGACCTCCCAAGCCCCCACGCGCCTGAGCCACCCCGACCCGATACCATT
CGATTTTGTTCCGCTTCGCGCTTCACTGAAAATATGCGAAGAACATTTAT
GGGTCCTTCGCGGGGATCGGTTTCGTTCGACTTGTTCCACCAGCGTCACT
TCCCGGCAAGGATCTTCGTGGTCGCAACTCCTAGCAACACGCACGCGCTC
GCATCCACCTCGCAACCGCTCTAGGGAAGACCTTATGATCCAGATAGCGC
GTCTCGAAGCCCAGTTAAAGAGGGTGGGCGAGGGCGTGGAGAAGGAGAGG
GCGGACATGGAGACGGTAATGCTAAACCTGTCCAACGCGCTCTCTGGGGT
TGATGTTCAGCTCAAGCAGTCGGCGGTGAGTCGGGCCACTTCGTTGTTGT
TGCTTTCAGGAGAACTTTGATCCACCAAGGAGAAAGACCCCCGAACGACC
TCCTCGAGGAGGGCAGCGATCGTCCAAAAATACGGTGATTTTCTGGTGTC
GACTGCCCCTTTCAAACCCATTCTTACCTCCATGAATCGTTGCCCGTGGT
GTTAGCTTTGACCTGCACTGGCGAGGCTCGTCGGTTGGCGGGGCCAAGCG
TAGAGGAACCAACCAAGGTGGGATAAGGTAGTCGAGGGCGCGCAAAGCCA
AGCTATTCGTGCACCTGTCGCCGTCTTTGCAAGGCCGAAACAGCTGAGCG
ACGACGAGCATACGAGAGCTCGAGTCGCTGGAGTGTTTGGCGAAGGGGTA
GGCTCGCAGACGTCACACGAAACGAAAGCCTTTCACCAATCGAAGTTTCG
TACATGGTTCACCACACGCACACTGGGCTGAGCTTCCCAGCCTTTTCTGT
TTCTACTTTTGTTCCAACCATGCACAATGAGTCCTCATTGTTTGGACTCA
ACAGAACCTCGAGGTACGTTTCATTCGACGTCGCACGACGGAACTCAGGA
GGCGTTCCTACCGCGTTGTGTCTTTCTCGGAAAAACTTCCGATCACTTAG
TGGCTTGACTGTTGTGATCGCTTGGTGCGACCCAGCCTTGTCGCGAAGTA
AGAGCTTTATCGCCGCCGCACCTCACCTACCACCCCTCCTGCTACGACCA
ATCGGTTGATCGCTAAATGGATTCACCAATCAGGGCATGACCCCGAGTCG
AGAAGCGAGTCGAGCTCTGAGACGGGCACAGGAGGACTTCCGGCGGGATC
AACGGAGGTGTGGGAGTATATAAGTAGTGGTACCGTTCACGGGGTGCCAG
TTTCCACCTACGGTACATCAGAAGTCAAATCGGGGGAAAGTCAACGCAGG
GCCTGTCCACTGGTGTACGTCTTTCTTCATCCATGACCATGCAAGGGCAC
GTCGTACCTCCGGGTGGGCATGTGGAATCGATAGGATTCCGTCTCGTTCG
AGTCGGACGCGACTGAGTGTTGAGTTAAGTCTGAGCACGGAAAACGGAGG
TGTCCCGCAGAGGTAATACCTATATTTTGGTGTGGTATGGTTCAGACAAT
GATTTGGATAGCAGACAGCAACAACAACACAGTTCGACCAGGTCACCAGT
TTTTTGTTCCAGCCGCCACCTGCCAATTTCGTGTTGCTGCGCGGAGCGGG
TTCGCCTGTCGGAATTCTCGCAAGCTTTCTTCCTCTAGCCGCATTGCGAT
ATTGCACGTTTCGACATCTGCAAGAAAAAGAACATATACAAGTATGTTCA
AGTGGTATACTATACTATTTCTATGCCGAAACGGTGGTTCGCCGTTGAAA
CACCCTTTCCAAACACACAAAATGCGCGCCCGTCCTTCGCGAGAGCTGAA
TGCACAGGGTCGTGTAAATTCCTTTGTTGGTTTCGAAATGGTGCATGGCA
GGGTGACGCTCTTGCTGGAAAAGCAGCGACAGCGTTACGACACGGCGTCA
AGTGTGGTTGAAGACGAAGCTCAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_M_contigs767:6225..11498+ >mRNA_H-canaliculatus_M_contigs767.2.1 ID=mRNA_H-canaliculatus_M_contigs767.2.1|Name=mRNA_H-canaliculatus_M_contigs767.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1323bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs767:6225..11498+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCAGACTCTAGATACGGTCTCGCATTTCGGACGGCTCACGGCGAGAG
GATTTCATCTGCCACTTCAAAGCCAGACGGCGAGAATATTCTGCAACGCA
TTACGACGATGGCGTCGAAACGATTGCCATCACCAGCAACAGCAACAGCA
ACAGCAACGCCGTCGCCACCTACCCCACCATCACAACACCGAACATCAAC
TTCGCCAGCTTCGCCACGTTTGTCTTCGCTGCCTTCTAATCCCATCGAGA
GATTCTCTGGGAATCACATACCAGGCAAGATGGAGCCAGCCTTCATCTTC
AAAATAAGATCATCGGGCTCCCTTGCCTCAACGGGCTTCTCAAAGGCTTC
CGCCGATATGCCGTCAATGTCGTCTCTAGCGGGCCGCCTTGTCTCGGACC
TCCGTTCTCGAGCTTTCTTGCCGCCTGGGTACAAGCAGCAGCTCAGACGC
ACAGCTAGCGGATTGCGGCAGGAGCATCATCACCAGCCGGAGGGGCTGCG
GGAGCTGAGTTCAGCCATCACGCAGGTAGAATCCAAGCTCAGCTTGGACA
GCTCGGAGGCCGGTCAGCTCAGGGAAGCCTTAAAAACGCTACGGTCGGAG
AAGGAGGCCTATCTACGGGAGCGCGCCTCGAATATCTCACGGACGGAAGA
CGTCTCCCGCGAGTTCGACGAGATGCGGCGTAGGGTGGCGACAATGGAAG
ATGAACTTGGCCGGCGCAACGGGCTGCTTCGGAGGGCGGAGGAGGGACGT
GAGGAAGTGCAGCAAAAGCTTTCGGCGACAGCACGGCAGCTCGCCAGCGG
CTTCCGGAAGGAGAAAGAACGGTTTTCTAGAGAGACGGAAGCGGCCGAGG
CTCGACAGGGAGAGAGAGGTACTTCAATAATCTCGGCAGCAGCAAAGCAC
GAACGAGACCGTGGTTACCGCGAGCGCTTGCGCACCCTGTCCGACGGCCT
GGCGTCCACCCAATTACAGCTCTCCACGCTCAAGTCCGAGCGGGAAACGC
AGAAACGCGAGGCGGCCAAAGTCAGGGAAGACCTTATGATCCAGATAGCG
CGTCTCGAAGCCCAGTTAAAGAGGGTGGGCGAGGGCGTGGAGAAGGAGAG
GGCGGACATGGAGACGGTAATGCTAAACCTGTCCAACGCGCTCTCTGGGG
TTGATGTTCAGCTCAAGCAGTCGGCGGGCATGACCCCGAGTCGAGAAGCG
AGTCGAGCTCTGAGACGGGCACAGGAGGACTTCCGGCGGGATCAACGGAG
GGTGACGCTCTTGCTGGAAAAGCAGCGACAGCGTTACGACACGGCGTCAA
GTGTGGTTGAAGACGAAGCTCAG back to top
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