mRNA_H-canaliculatus_M_contigs76677.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76677.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76677.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76677.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76677contigH-canaliculatus_M_contigs76677:4..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog314230.DSM3645_02453
PFAMsCalx-beta,F5_F8_type_C,RHS_repeat,VCBS
Model size498
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000851
EggNOG OGsCOG2730@1|root,COG2834@1|root,COG2931@1|root,COG3121@1|root,COG3209@1|root,COG3291@1|root,COG4932@1|root,COG2730@2|Bacteria,COG2834@2|Bacteria,COG2931@2|Bacteria,COG3121@2|Bacteria,COG3209@2|Bacteria,COG3291@2|Bacteria,COG4932@2|Bacteria,2IWU6@203682|Planctomycetes
DescriptionTIGRFAM RHS repeat-associated core domain
Cds size474
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.1003287-UTR-H-canaliculatus_M_contigs76677:3..271696854105.1003287-UTR-H-canaliculatus_M_contigs76677:3..27Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76677 4..27 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854105.1216657-CDS-H-canaliculatus_M_contigs76677:27..5011696854105.1216657-CDS-H-canaliculatus_M_contigs76677:27..501Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76677 28..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76677.1.1prot_H-canaliculatus_M_contigs76677.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76677 28..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76677.1.1

>prot_H-canaliculatus_M_contigs76677.1.1 ID=prot_H-canaliculatus_M_contigs76677.1.1|Name=mRNA_H-canaliculatus_M_contigs76677.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=158bp
MAYDVYNRLLTTTYPDGTSMSHTYDVEGNKLTDTDRLGRTTTYTYDALNR
VVKTTYADGAEMSNVYDAAGRMTNSTDARGNTMTYEYDAANRRTAVVDAL
DNRHEYSYDAAGNVTAETDARGNTMSYTYNDLDQRTRMTYADATATVDSL
DALGRRTR
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mRNA from alignment at H-canaliculatus_M_contigs76677:4..501+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76677.1.1 ID=mRNA_H-canaliculatus_M_contigs76677.1.1|Name=mRNA_H-canaliculatus_M_contigs76677.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=498bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76677:4..501+ (Hapterophycus canaliculatus Oshoro7m male)
GATGCCAAGGGTCGCCGAACAACCATGGCCTATGACGTTTACAACCGCTT
GTTAACAACCACCTATCCCGATGGCACCAGTATGAGCCACACCTATGATG
TGGAAGGCAACAAGCTCACCGACACGGATCGCTTAGGGCGCACTACCACG
TACACTTACGATGCTTTGAATCGCGTAGTGAAAACCACCTACGCCGATGG
CGCAGAAATGTCGAACGTGTACGACGCAGCCGGTCGCATGACCAACAGCA
CCGATGCGCGCGGCAACACCATGACCTACGAATACGATGCCGCCAACCGC
CGCACCGCCGTAGTGGATGCATTGGATAACCGTCACGAGTACAGTTATGA
CGCCGCAGGCAATGTCACGGCCGAGACGGATGCCCGAGGCAACACCATGA
GCTACACCTACAACGATCTGGATCAGCGTACACGCATGACCTACGCGGAT
GCCACAGCAACCGTAGATAGCTTGGACGCCCTAGGCCGTCGTACACGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76677:4..501+

>mRNA_H-canaliculatus_M_contigs76677.1.1 ID=mRNA_H-canaliculatus_M_contigs76677.1.1|Name=mRNA_H-canaliculatus_M_contigs76677.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=474bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76677:4..501+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCTATGACGTTTACAACCGCTTGTTAACAACCACCTATCCCGATGG
CACCAGTATGAGCCACACCTATGATGTGGAAGGCAACAAGCTCACCGACA
CGGATCGCTTAGGGCGCACTACCACGTACACTTACGATGCTTTGAATCGC
GTAGTGAAAACCACCTACGCCGATGGCGCAGAAATGTCGAACGTGTACGA
CGCAGCCGGTCGCATGACCAACAGCACCGATGCGCGCGGCAACACCATGA
CCTACGAATACGATGCCGCCAACCGCCGCACCGCCGTAGTGGATGCATTG
GATAACCGTCACGAGTACAGTTATGACGCCGCAGGCAATGTCACGGCCGA
GACGGATGCCCGAGGCAACACCATGAGCTACACCTACAACGATCTGGATC
AGCGTACACGCATGACCTACGCGGATGCCACAGCAACCGTAGATAGCTTG
GACGCCCTAGGCCGTCGTACACGT
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