mRNA_H-canaliculatus_M_contigs76658.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76658.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76658.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Eukaryotic (translation initiation factor 3 subunit D n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNN8_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.010e-48
Identity = 83/84 (98.81%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKVNGTLFLDKREASQLDYLTFNETAVDPP 267
            QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKVNGTLFLDKREASQLDYLT NETAVDPP
Sbjct:  240 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKVNGTLFLDKREASQLDYLTVNETAVDPP 323
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BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Eukaryotic (translation initiation factor 3 subunit D n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q148_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.470e-37
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKVNGTLFLDKREASQLDYLTFNETAVDPP 267
            +RCE KEFYYVTTTDDPV+EKLAVE  GNVFATDAILAHLMASPR++YPWD+VVQK++ TLF DKR+ SQ DYLT NETA + P
Sbjct:  263 ERCENKEFYYVTTTDDPVIEKLAVENAGNVFATDAILAHLMASPRSVYPWDLVVQKLDDTLFFDKRDNSQFDYLTVNETAYEAP 346
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BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z1C3_TRICV)

HSP 1 Score: 127 bits (320), Expect = 9.140e-35
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKV--NGTLFLDKREASQLDYLTFNETAVDPP 267
            +R E KEFY VTT DDPV+EKLA+EG GNVFATDAILAHLM  PR++YPWD+VVQK+  +G LF DKR++SQ DYLT NETA +PP
Sbjct:   85 KRSENKEFYPVTTMDDPVVEKLAIEGAGNVFATDAILAHLMTCPRSVYPWDVVVQKLPGSGALFFDKRDSSQFDYLTVNETANNPP 170
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BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Eukaryotic (translation initiation factor 3 subunit D n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EJG1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.900e-34
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKVNGTLFLDKREASQLDYLTFNETAVDPP 267
            +R E ++FY VTTTDDPV+EKLA++G GNVFATDAILAHLM SPR++YPWDIVVQK+ G LF DKR++SQ DYLT NETA +PP
Sbjct:  240 KRVENRDFYPVTTTDDPVIEKLAIDGAGNVFATDAILAHLMTSPRSVYPWDIVVQKLPGLLFFDKRDSSQFDYLTVNETANNPP 323
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BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PDG6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.790e-34
Identity = 63/85 (74.12%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKV-NGTLFLDKREASQLDYLTFNETAVDPP 267
            +R E KEFY VTTTDDPV+EKLA+EGKG VFATDAILAHLM  PR+IYPWDIVVQK+  G LF DKR+ASQ DYLT +ET+  PP
Sbjct:   29 KRVETKEFYPVTTTDDPVIEKLAIEGKGTVFATDAILAHLMTCPRSIYPWDIVVQKLPTGALFFDKRDASQFDYLTVHETSNTPP 113
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BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GV78_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.610e-33
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKV--NGTLFLDKREASQLDYLTFNETAVDPP 267
            +R E K+FY VTTTDDPV+E+LA++G GNVFATDAILAHLM SPR++YPWDIVVQK+  +G LF DKR++SQ DYLT NETA +PP
Sbjct:  105 KRVENKDFYPVTTTDDPVIERLAIDGAGNVFATDAILAHLMTSPRSVYPWDIVVQKLPGSGALFFDKRDSSQFDYLTVNETANNPP 190
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BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Predicted (protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDZ2_THAPS)

HSP 1 Score: 127 bits (319), Expect = 2.900e-33
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKV-NGTLFLDKREASQLDYLTFNETAVDPP 267
            +R E KEFY VTTTDDPV+EKLA+EGKG VFATDAILAHLM  PR++YPWD+VVQK+  G LF DKR+ASQ DYLT +ET+  PP
Sbjct:   68 KRIENKEFYPVTTTDDPVIEKLAIEGKGTVFATDAILAHLMTCPRSVYPWDVVVQKLPTGALFFDKRDASQFDYLTVHETSNTPP 152
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BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPB9_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.460e-33
Identity = 63/85 (74.12%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKVNGT-LFLDKREASQLDYLTFNETAVDPP 267
            +R E KEFY VTTTDDPV+EKLA+EG GNVFATDAILAHLMAS R+IYPWD+VVQK+ G  LF DKR+ASQ D+LT +ETA +PP
Sbjct:  284 KRTENKEFYPVTTTDDPVIEKLAIEGSGNVFATDAILAHLMASARSIYPWDVVVQKLPGNILFFDKRDASQFDFLTVSETAYNPP 368
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Eukaryotic (translation initiation factor 3 subunit D n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.630e-31
Identity = 58/86 (67.44%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLA--VEGKGNVFATDAILAHLMASPRTIYPWDIVVQKVNGTLFLDKREASQLDYLTFNETAVDPP 267
            +R E KEFY+VTTTDDPV+E+L   +E  G VFATDAIL+HLMA+PR+++PWD+V+QKVNGTLF+DKR+ SQ D+LT NETA D P
Sbjct:  232 RRHENKEFYFVTTTDDPVIERLTTELENAGAVFATDAILSHLMAAPRSVFPWDVVIQKVNGTLFMDKRDNSQFDFLTVNETAYDTP 317
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BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P8F0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.710e-31
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:   16 QRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPRTIYPWDIVVQKV-NGTLFLDKREASQLDYLTFNETAVDPP 267
            +R E KEFY VTTTDDPV+E LA+E  GNVFATD ILAHLMASPR++ PWDIVVQK+ NGTLF DKR++SQ D+LT +ETA  PP
Sbjct:  240 KRFENKEFYPVTTTDDPVIENLAIEQSGNVFATDVILAHLMASPRSVIPWDIVVQKLPNGTLFFDKRDSSQFDFLTVSETANQPP 324
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76658.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Eukaryotic1.010e-4898.81translation initiation factor 3 subunit D n=2 Tax=... [more]
Eukaryotic3.470e-3777.38translation initiation factor 3 subunit D n=1 Tax=... [more]
Hypothetical9.140e-3570.93protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Eukaryotic2.900e-3472.62translation initiation factor 3 subunit D n=1 Tax=... [more]
Hypothetical4.790e-3474.12protein (Fragment) n=1 Tax=Skeletonema marinoi Tax... [more]
Hypothetical1.610e-3370.93protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Predicted2.900e-3371.76protein (Fragment) n=1 Tax=Thalassiosira pseudonan... [more]
Hypothetical6.460e-3374.12protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Eukaryotic1.630e-3167.44translation initiation factor 3 subunit D n=1 Tax=... [more]
Hypothetical1.710e-3171.76protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76658contigH-canaliculatus_M_contigs76658:1..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LNN8
Preferred nameEIF3D
PFAMseIF-3_zeta
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K02987,ko:K03251,ko:K10136
KEGG Pathwayko03010,ko03013,ko04115,map03010,map03013,map04115
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0001732,GO:0002181,GO:0002183,GO:0002191,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005813,GO:0005815,GO:0005829,GO:0005852,GO:0005856,GO:0005911,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006470,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0012505,GO:0015630,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016282,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030054,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032879,GO:0032880,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045727,GO:0046686,GO:0046906,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0060341,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070993,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0075522,GO:0075525,GO:0080090,GO:0090056,GO:0097159,GO:0098808,GO:0098827,GO:0104004,GO:0140096,GO:1900180,GO:1900182,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1901566,GO:1901576,GO:1902325,GO:1902415,GO:1902416,GO:1903827,GO:1903829,GO:1905214,GO:1905216,GO:1990904,GO:2000112
Exons2
Evalue1.66e-49
EggNOG OGsKOG2479@1|root,KOG2479@2759|Eukaryota
Descriptiontranslation initiation factor activity
Cds size267
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.9962468-CDS-H-canaliculatus_M_contigs76658:0..841696854104.9962468-CDS-H-canaliculatus_M_contigs76658:0..84Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76658 1..84 -
1696854105.0117245-CDS-H-canaliculatus_M_contigs76658:255..4381696854105.0117245-CDS-H-canaliculatus_M_contigs76658:255..438Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76658 256..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76658.1.1prot_H-canaliculatus_M_contigs76658.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76658 1..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76658.1.1

>prot_H-canaliculatus_M_contigs76658.1.1 ID=prot_H-canaliculatus_M_contigs76658.1.1|Name=mRNA_H-canaliculatus_M_contigs76658.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=89bp
TTLTNQRCEKKEFYYVTTTDDPVMEKLAVEGKGNVFATDAILAHLMASPR
TIYPWDIVVQKVNGTLFLDKREASQLDYLTFNETAVDPP
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mRNA from alignment at H-canaliculatus_M_contigs76658:1..438-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76658.1.1 ID=mRNA_H-canaliculatus_M_contigs76658.1.1|Name=mRNA_H-canaliculatus_M_contigs76658.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=438bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76658:1..438- (Hapterophycus canaliculatus Oshoro7m male)
ACCACCTTGACCAATCAGCGCTGTGAGAAGAAGGAGTTCTACTACGTCAC
GACCACCGACGACCCCGTGATGGAGAAGCTCGCCGTGGAGGGCAAGGGCA
ACGTGTTCGCCACCGACGCCATTCTCGCACACCTTATGGCGTCGCCAAGG
ACCATCTACCCGTGGGACATCGTCGTGCAGAAGGTGGGGTAGGGTGGGGT
CGTGTGCGGACTCGAGACGGAAGGGAGAAGCGGGGATTCGAAACATGGCG
TTTTTCATTTGCGAAGACCGTTTCTCTCGAAGCGCCGGTGTTGTGGTGGC
TTTCGCCGTAGCTCTGCTTGATGCTGCCGTTGTCGCTGCTGCCGCCCTCA
TCAGGTCAACGGCACCTTGTTCCTCGACAAGCGCGAGGCGAGCCAGCTGG
ACTACCTCACCTTCAACGAGACCGCCGTGGACCCTCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76658:1..438-

>mRNA_H-canaliculatus_M_contigs76658.1.1 ID=mRNA_H-canaliculatus_M_contigs76658.1.1|Name=mRNA_H-canaliculatus_M_contigs76658.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=267bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76658:1..438- (Hapterophycus canaliculatus Oshoro7m male)
ACCACCTTGACCAATCAGCGCTGTGAGAAGAAGGAGTTCTACTACGTCAC
GACCACCGACGACCCCGTGATGGAGAAGCTCGCCGTGGAGGGCAAGGGCA
ACGTGTTCGCCACCGACGCCATTCTCGCACACCTTATGGCGTCGCCAAGG
ACCATCTACCCGTGGGACATCGTCGTGCAGAAGGTCAACGGCACCTTGTT
CCTCGACAAGCGCGAGGCGAGCCAGCTGGACTACCTCACCTTCAACGAGA
CCGCCGTGGACCCTCCC
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