mRNA_H-canaliculatus_M_contigs76627.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76627.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76627.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76627.1.1 vs.
Match: Hypothetical (leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA2_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.940e-10
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    1 STMCILSTRKFGHSEAVAFSAALSSNTSLGELLASGHRLEAAG 129
            STMCILSTRKFG SEA AFSAALS NTSL ELLASGH LE AG
Sbjct:   23 STMCILSTRKFGPSEAAAFSAALSGNTSLTELLASGHPLEVAG 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76627.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Hypothetical2.940e-1086.05leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76627contigH-canaliculatus_M_contigs76627:40..270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LKA2
PFAMsLRR_6
Model size231
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.96e-10
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size225
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.7453442-CDS-H-canaliculatus_M_contigs76627:39..2641696854104.7453442-CDS-H-canaliculatus_M_contigs76627:39..264Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76627 40..264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.7570496-UTR-H-canaliculatus_M_contigs76627:264..2701696854104.7570496-UTR-H-canaliculatus_M_contigs76627:264..270Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76627 265..270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76627.1.1prot_H-canaliculatus_M_contigs76627.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76627 40..264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76627.1.1

>prot_H-canaliculatus_M_contigs76627.1.1 ID=prot_H-canaliculatus_M_contigs76627.1.1|Name=mRNA_H-canaliculatus_M_contigs76627.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=75bp
MCILSTRKFGHSEAVAFSAALSSNTSLGELLASGHRLEAAGAAAFGEALS
RNTTLRSLCVGDNEFGDEVCGLGG*
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mRNA from alignment at H-canaliculatus_M_contigs76627:40..270-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76627.1.1 ID=mRNA_H-canaliculatus_M_contigs76627.1.1|Name=mRNA_H-canaliculatus_M_contigs76627.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=231bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76627:40..270- (Hapterophycus canaliculatus Oshoro7m male)
AGCACAATGTGCATCCTTAGTACGAGGAAGTTTGGTCATTCGGAAGCCGT
GGCCTTCTCCGCCGCTCTGTCTAGCAACACCTCCCTCGGAGAGTTACTCG
CCTCGGGGCACCGCCTTGAAGCCGCTGGGGCGGCGGCGTTTGGCGAGGCC
CTATCGAGGAACACAACGCTTCGGTCACTCTGCGTGGGGGATAACGAATT
CGGCGACGAGGTATGCGGATTGGGAGGATAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76627:40..270-

>mRNA_H-canaliculatus_M_contigs76627.1.1 ID=mRNA_H-canaliculatus_M_contigs76627.1.1|Name=mRNA_H-canaliculatus_M_contigs76627.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=225bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76627:40..270- (Hapterophycus canaliculatus Oshoro7m male)
ATGTGCATCCTTAGTACGAGGAAGTTTGGTCATTCGGAAGCCGTGGCCTT
CTCCGCCGCTCTGTCTAGCAACACCTCCCTCGGAGAGTTACTCGCCTCGG
GGCACCGCCTTGAAGCCGCTGGGGCGGCGGCGTTTGGCGAGGCCCTATCG
AGGAACACAACGCTTCGGTCACTCTGCGTGGGGGATAACGAATTCGGCGA
CGAGGTATGCGGATTGGGAGGATAA
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