mRNA_H-canaliculatus_M_contigs7655.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7655.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7655.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7655.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUY7_9STRA)

HSP 1 Score: 151 bits (381), Expect = 7.460e-45
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 1 
Query:   16 LKTCCGALAILAKDESNKLLIARDGTRLILTVMEGHATRPDLQAWPFCDLLWSLAFNNGLVKEVVGRQGGIALILRGMSSHLSSPELIKSACGALSNMCQNTYNQNLIAA 345
            LKTC G LAIL++DE+NKLLIARDG RLIL+VME H   P LQ    CDLLWSLAFNN LVKEV+GR GGI +I+ GM +H  SP+L+KS CGALSN+CQN +NQ LIAA
Sbjct:   29 LKTCMGVLAILSRDEANKLLIARDGIRLILSVMEMHMEWPGLQE-AACDLLWSLAFNNNLVKEVIGRYGGIPVIIAGMRAHAGSPDLLKSCCGALSNICQNQHNQTLIAA 137
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7655.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBU4_9ARCH)

HSP 1 Score: 114 bits (285), Expect = 1.260e-27
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 1 
Query:   10 ECLKTCCGALAILAKDESNKLLIARDGTRLILTVMEGHATRPDLQAWPFCDLLWSLAFNNGLVKEVVGRQGGIALILRGMSSHLSSPELIKSACGALSNMCQNTYNQNLIAA 345
            E +KTC G LAI++++++NK LIA+DG  ++L VM  H  R D+Q    CDLLWSLAFN+ +VKE++ +  G  +++R +  H  S + +KSACGALSN+CQ   NQ  +AA
Sbjct:   24 EAMKTCFGILAIMSREDTNKGLIAKDGMEIVLNVMTSHIDRTDVQE-AGCDLLWSLAFNSTVVKEIIAKYNGSTVLVRALKRHSRSSDFLKSACGALSNICQFKQNQESVAA 134
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7655.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJC0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 7.770e-8
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:  214 RQGGIALILRGMSSHLSSPELIKSACGALSNMCQNTYNQNLIAA 345
            + GGI +I++GM  H + P+ +KSACGALSNMCQN  NQ LIA+
Sbjct:    1 QHGGIPVIIQGMKLHGAVPDFLKSACGALSNMCQNANNQGLIAS 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7655.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Hypothetical7.460e-4569.09protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
Uncharacterized1.260e-2748.21protein (Fragment) n=1 Tax=archaeon TaxID=1906665 ... [more]
Hypothetical7.770e-859.09protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7655contigH-canaliculatus_M_contigs7655:4177..5194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008876918.1
Preferred nameAGTPBP1
PFAMsPeptidase_M14
Model size345
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001505,GO:0001654,GO:0001754,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003008,GO:0003674,GO:0003824,GO:0004180,GO:0004181,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007610,GO:0007626,GO:0007628,GO:0008092,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008344,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009987,GO:0015631,GO:0016043,GO:0016787,GO:0018193,GO:0018200,GO:0018410,GO:0018991,GO:0019098,GO:0019538,GO:0021533,GO:0021537,GO:0021549,GO:0021575,GO:0021587,GO:0021680,GO:0021692,GO:0021694,GO:0021695,GO:0021696,GO:0021697,GO:0021702,GO:0021772,GO:0021953,GO:0021988,GO:0022008,GO:0022037,GO:0022414,GO:0030097,GO:0030098,GO:0030154,GO:0030182,GO:0030217,GO:0030534,GO:0030900,GO:0030902,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0033077,GO:0035608,GO:0035609,GO:0035610,GO:0036211,GO:0042110,GO:0042133,GO:0043009,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045321,GO:0046530,GO:0046649,GO:0048513,GO:0048534,GO:0048592,GO:0048609,GO:0048646,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050877,GO:0050905,GO:0060041,GO:0060322,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0071704,GO:0071840,GO:0090596,GO:0090659,GO:0140096,GO:1901564
Exons2
Evalue4.03e-20
EggNOG OGsCOG2866@1|root,KOG3641@2759|Eukaryota
Descriptionprotein deglutamylation
Cds size345
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.1497853-CDS-H-canaliculatus_M_contigs7655:4176..43301696854104.1497853-CDS-H-canaliculatus_M_contigs7655:4176..4330Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7655 4177..4330 +
1696854104.1625495-CDS-H-canaliculatus_M_contigs7655:5003..51941696854104.1625495-CDS-H-canaliculatus_M_contigs7655:5003..5194Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7655 5004..5194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7655.1.1prot_H-canaliculatus_M_contigs7655.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7655 4177..5194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7655.1.1

>prot_H-canaliculatus_M_contigs7655.1.1 ID=prot_H-canaliculatus_M_contigs7655.1.1|Name=mRNA_H-canaliculatus_M_contigs7655.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=115bp
GNVECLKTCCGALAILAKDESNKLLIARDGTRLILTVMEGHATRPDLQAW
PFCDLLWSLAFNNGLVKEVVGRQGGIALILRGMSSHLSSPELIKSACGAL
SNMCQNTYNQNLIAA
back to top

mRNA from alignment at H-canaliculatus_M_contigs7655:4177..5194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7655.1.1 ID=mRNA_H-canaliculatus_M_contigs7655.1.1|Name=mRNA_H-canaliculatus_M_contigs7655.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1018bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7655:4177..5194+ (Hapterophycus canaliculatus Oshoro7m male)
GGGAACGTGGAGTGCCTCAAGACCTGCTGCGGAGCTCTTGCGATACTAGC
TAAGGACGAATCAAACAAGCTTCTCATTGCCAGGGACGGCACTCGGCTTA
TTCTCACCGTCATGGAGGGCCATGCGACTCGTCCCGACCTCCAGGCATGG
CCCTGTCGTAACCCACCGTAGACGAGCGAAACTTGCCAAAAAGTCAAAGC
CTATTATCCCTGTTGAGGAATGGGTCGTGTGCATCGGCGAGTCTCCACCT
TAGTCATGAACTGGTCACGCGATTCAAAAGGAGAAACGGGTTGGGCCAAA
AATCCGATCGACAACGCTCGATTTCCAACTATGACACAAGTATAGTTGGC
GAGCAATAATTAGCCTGTTGCATGGAGACCAGGATAGGCACCTTCCTAGC
AGTTGTACAAAAACACGTACGTTTCGCTTGGACGCGCGCAGCATCCCTCG
ATCAAACACTACGGAAGAACCTGATGCTACCTCCGGTGGCAGGTTGGAGC
CACCACTTCTCGCGACCTCTCTCCATGTAGAAGATATCTCCGCTAGGGTT
TTGCAAGGAAACAGATCGGAGGTTGAACGGCTGCGTTGACAAATTTGCTC
TAGATAGCGTCGTTGCTGCTGGGTGTGCCTGACCACACGGACCTCCATCG
AGCCCCGCACTTATGTTTCCATCGTTGTGCCGATTGTTTTGCAACCAAGA
CAACATACGAAGTTGCACTCAAGCTGGGTAAGCTCAAATCTGGGACTCCC
CTCCGCGTCTAGACTAATCCCACATTTTACCATCTGTTCCACTTTTGAAA
CACAACCTGCCGGACAACAGGAGGCAGTCTGTGATTTATTGTGGAGCCTT
GCATTCAACAACGGTTTGGTGAAGGAGGTCGTCGGGAGGCAAGGAGGCAT
CGCCCTCATCCTCAGGGGCATGTCATCCCACCTCTCTAGCCCCGAGCTGA
TCAAAAGCGCGTGCGGCGCCCTGAGCAACATGTGCCAGAACACCTACAAC
CAGAACCTTATCGCTGCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7655:4177..5194+

>mRNA_H-canaliculatus_M_contigs7655.1.1 ID=mRNA_H-canaliculatus_M_contigs7655.1.1|Name=mRNA_H-canaliculatus_M_contigs7655.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=345bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7655:4177..5194+ (Hapterophycus canaliculatus Oshoro7m male)
GGGAACGTGGAGTGCCTCAAGACCTGCTGCGGAGCTCTTGCGATACTAGC
TAAGGACGAATCAAACAAGCTTCTCATTGCCAGGGACGGCACTCGGCTTA
TTCTCACCGTCATGGAGGGCCATGCGACTCGTCCCGACCTCCAGGCATGG
CCCTTCTGTGATTTATTGTGGAGCCTTGCATTCAACAACGGTTTGGTGAA
GGAGGTCGTCGGGAGGCAAGGAGGCATCGCCCTCATCCTCAGGGGCATGT
CATCCCACCTCTCTAGCCCCGAGCTGATCAAAAGCGCGTGCGGCGCCCTG
AGCAACATGTGCCAGAACACCTACAACCAGAACCTTATCGCTGCG
back to top