mRNA_H-canaliculatus_M_contigs7654.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7654.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7654.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: Peptidylprolyl (isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP17_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.850e-39
Identity = 70/89 (78.65%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLKKIATELEPVREFYEAEEEHQQ 267
            +QVLYDPSET Y +LL IFFGRHDPTQVNGQGND GTQYRAGVYFHDE+Q+ +AEKFFA++   RRLKK+ATELE VREFY+AE+EHQQ
Sbjct:  222 VQVLYDPSETKYADLLTIFFGRHDPTQVNGQGNDKGTQYRAGVYFHDEQQKAVAEKFFADEISARRLKKLATELEEVREFYDAEDEHQQ 310
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BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrA n=1 Tax=Halobacteriales archaeon QS_1_67_19 TaxID=1919167 RepID=A0A2R6EKR2_9EURY)

HSP 1 Score: 97.4 bits (241), Expect = 1.540e-23
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLK--KIATELEPVREFYEAEEEHQ 264
            +Q+ YDP E +YE++LR+FF  HDPTQ+N QG D GTQYR+ V++HDE+QRE  E+F  E   E      +I TE+EP+  FYEAEE HQ
Sbjct:   58 VQIEYDPDELSYEDVLRVFFTIHDPTQLNRQGPDVGTQYRSAVFYHDEDQRETVERFIEELAAEGAYDAGEIVTEVEPLETFYEAEEHHQ 147
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BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrA n=2 Tax=Natrialbaceae TaxID=1644061 RepID=A0A1N7FJX6_9EURY)

HSP 1 Score: 95.5 bits (236), Expect = 7.360e-23
Identity = 49/88 (55.68%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLKKIATELEPVREFYEAEEEHQ 264
            +Q+ YDP E +YE LL +FF  HDPTQ+N QG D GTQYR+ +Y H +EQ E AE F AE + E   + I TE+EP+  FYEAEE HQ
Sbjct:   55 VQLEYDPDEISYEKLLEVFFTVHDPTQLNRQGPDVGTQYRSAIYAHSDEQLETAEAFAAELESEGLYEGIETEIEPLETFYEAEEAHQ 142
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BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: peptide-methionine ((S)-S-oxide reductase MsrA n=1 Tax=Halorussus halophilus TaxID=2650975 RepID=UPI0013015638)

HSP 1 Score: 95.5 bits (236), Expect = 7.360e-23
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLKK--IATELEPVREFYEAEEEHQ 264
            +QV YDP + +YE+LL++FF  HDPTQ+N QG D GTQYR+ V++HD+EQ++  E+F +E + E    +  I TE+ P+ EFYEAEE HQ
Sbjct:   58 IQVEYDPGKLSYEDLLQVFFTVHDPTQLNRQGPDVGTQYRSAVFYHDDEQKQTVERFISELEAEGAYDEDEIVTEISPLEEFYEAEEYHQ 147
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BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrA n=1 Tax=Wenzhouxiangella limi TaxID=2707351 RepID=A0A845V399_9GAMM)

HSP 1 Score: 94.7 bits (234), Expect = 8.050e-23
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLK-KIATELEPVREFYEAEEEHQQ 267
            +QV +DP+E  Y+ LLR FF  HDPTQV+ QG DTGTQYR+ ++FHD++QRE+AE+  AE     R    IAT +EP   F+EAEE HQQ
Sbjct:   56 VQVEFDPAEVGYQRLLRAFFSMHDPTQVDRQGPDTGTQYRSVIFFHDDQQRELAEQIRAEMDASGRFPGPIATRIEPADAFWEAEEYHQQ 145
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BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: peptide-methionine ((S)-S-oxide reductase MsrA n=1 Tax=Halorussus litoreus TaxID=1710536 RepID=UPI000E234646)

HSP 1 Score: 94.0 bits (232), Expect = 3.160e-22
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:    1 LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLKK--IATELEPVREFYEAEEEHQ 264
            +QV YDP++  YE+LL++FF  HDPTQ+N QG D GTQYR+ V++HD+EQ ++  +F ++ + E    +  I TE+EP+ EFYEAEE HQ
Sbjct:   61 VQVEYDPAKLAYEDLLKVFFTVHDPTQLNRQGPDVGTQYRSAVFYHDDEQADIVRQFVSQLEAEGAYDEGDIVTEIEPLEEFYEAEEHHQ 150
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BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: peptide-methionine ((S)-S-oxide reductase MsrA n=1 Tax=Halorussus TaxID=1070314 RepID=UPI000E21AA6A)

HSP 1 Score: 93.6 bits (231), Expect = 5.030e-22
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:    1 LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLKK--IATELEPVREFYEAEEEHQ 264
            +QV YDP   +YE++L++FF  HDPTQ+N QG D GTQYR+ V++HD+EQR   E+F  E + E    +  I TE+EP+ EFYEAEE HQ
Sbjct:   59 VQVEYDPDALSYEDVLQVFFTVHDPTQLNRQGPDVGTQYRSAVFYHDDEQRGTVERFIEELEAEGAYDEDDIVTEVEPLEEFYEAEEYHQ 148
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: Peptide-methionine ((S)-S-oxide reductase n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8B3V2_NELNU)

HSP 1 Score: 94.4 bits (233), Expect = 1.140e-21
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLKKIATELEPVREFYEAEEEHQQ 267
            ++V YDP E +YENLL +F+ RHDPT +N QGND GTQYR+G+Y++  EQ E A +   EQ+ ++  +KI TE+ PV++FY AEE HQQ
Sbjct:  147 VRVQYDPKECSYENLLDVFWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQ-EKAARESMEQQQKQLSRKIVTEILPVKKFYRAEEYHQQ 234
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: Peptide (methionine sulfoxide reductase MsrA n=1 Tax=Halobacteriales archaeon QS_8_69_26 TaxID=1919187 RepID=A0A2R6JL55_9EURY)

HSP 1 Score: 92.4 bits (228), Expect = 1.200e-21
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    7 VLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLKK-IATELEPVREFYEAEEEHQ 264
            V YDP E  YE+LL++FF  HDPTQ+N QG D GTQYR+ ++ HDEEQ   AE+F  E + E      I TE+ P+ EFYEAEE+HQ
Sbjct:   61 VEYDPDELAYEDLLQVFFTIHDPTQLNRQGPDVGTQYRSAIFSHDEEQHRTAERFVGELEAEGAYDDGIVTEIAPLEEFYEAEEKHQ 147
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Match: Peptide-methionine ((S)-S-oxide reductase n=5 Tax=Phaseoleae TaxID=163735 RepID=V7BKH3_PHAVU)

HSP 1 Score: 92.8 bits (229), Expect = 1.420e-21
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQREMAEKFFAEQKLERRLKKIATELEPVREFYEAEEEHQQ 267
            ++V YDP+E +YENLL +F+ RHDPT +N QGND GTQYR+G+Y++  EQ + A +   EQ+ ++  +KI TE+ P ++FY AEE HQQ
Sbjct:   90 VRVQYDPNECSYENLLNLFWARHDPTALNRQGNDVGTQYRSGIYYYTPEQEKAATESL-EQQQKKLNRKIVTEILPAKKFYRAEEYHQQ 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7654.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Peptidylprolyl1.850e-3978.65isomerase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Peptide1.540e-2354.44methionine sulfoxide reductase MsrA n=1 Tax=Haloba... [more]
Peptide7.360e-2355.68methionine sulfoxide reductase MsrA n=2 Tax=Natria... [more]
peptide-methionine7.360e-2352.22(S)-S-oxide reductase MsrA n=1 Tax=Halorussus halo... [more]
Peptide8.050e-2355.56methionine sulfoxide reductase MsrA n=1 Tax=Wenzho... [more]
peptide-methionine3.160e-2251.11(S)-S-oxide reductase MsrA n=1 Tax=Halorussus lito... [more]
peptide-methionine5.030e-2253.33(S)-S-oxide reductase MsrA n=1 Tax=Halorussus TaxI... [more]
Peptide-methionine1.140e-2153.93(S)-S-oxide reductase n=1 Tax=Nelumbo nucifera Tax... [more]
Peptide1.200e-2155.17methionine sulfoxide reductase MsrA n=1 Tax=Haloba... [more]
Peptide-methionine1.420e-2151.69(S)-S-oxide reductase n=5 Tax=Phaseoleae TaxID=163... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7654contigH-canaliculatus_M_contigs7654:4517..5124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FP17
Preferred nameMSRA4
PFAMsPMSR
Model size267
Max annot lvl2759|Eukaryota
KEGG koko:K02214,ko:K07304,ko:K14442,ko:K16914
KEGG Pathwayko03018,ko04110,ko04111,ko04113,map03018,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006464,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0008113,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0016491,GO:0016667,GO:0016671,GO:0019538,GO:0031967,GO:0031975,GO:0033554,GO:0033744,GO:0034599,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0071704,GO:0080167,GO:1901564
Exons2
Evalue3.03e-40
EggNOG OGsCOG0225@1|root,KOG1635@2759|Eukaryota
EC1.14.11.27,1.8.4.11,2.7.11.1,3.6.4.13
Descriptionpeptide-methionine (S)-S-oxide reductase activity
Cds size267
COG categoryO
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019,ko03032,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854104.0561757-CDS-H-canaliculatus_M_contigs7654:4516..46331696854104.0561757-CDS-H-canaliculatus_M_contigs7654:4516..4633Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7654 4517..4633 -
1696854104.0730994-CDS-H-canaliculatus_M_contigs7654:4974..51241696854104.0730994-CDS-H-canaliculatus_M_contigs7654:4974..5124Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7654 4975..5124 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7654.2.1prot_H-canaliculatus_M_contigs7654.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7654 4517..5124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7654.2.1

>prot_H-canaliculatus_M_contigs7654.2.1 ID=prot_H-canaliculatus_M_contigs7654.2.1|Name=mRNA_H-canaliculatus_M_contigs7654.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=89bp
LQVLYDPSETTYENLLRIFFGRHDPTQVNGQGNDTGTQYRAGVYFHDEEQ
REMAEKFFAEQKLERRLKKIATELEPVREFYEAEEEHQQ
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mRNA from alignment at H-canaliculatus_M_contigs7654:4517..5124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7654.2.1 ID=mRNA_H-canaliculatus_M_contigs7654.2.1|Name=mRNA_H-canaliculatus_M_contigs7654.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=608bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7654:4517..5124- (Hapterophycus canaliculatus Oshoro7m male)
TTGCAGGTCCTGTACGACCCGTCCGAGACGACCTACGAGAACCTTCTGAG
AATTTTCTTCGGGAGACACGACCCAACTCAAGTGAACGGCCAGGGAAACG
ATACGGGCACGCAGTATAGAGCCGGGGTGTACTTCCACGACGAAGAACAG
GTGCGACGGGGGCACGATGGCTGGGGCGTTGATTTTTTGGAGGGGCACTT
GCTGACCACGCGAATGGGCGGAGATTCGTCGGATCTCGAGCGCGATCGTC
GACCTCTGACCTGTCGGCTAGGCGTGATGGCTCATCACCTTTTCATGGCT
TTCACTTGAGCTCAACTCCGAAGGTTAACCGGCACGCCCCAAATCACATC
TCTGTTCTTCGTTCCCCCTTTCCCTCCCTTTCGCCCGCCTCTGCGGGTGT
ACCGGTTCTCACACTCTCCCTTTGTGTGCCCACCATTGCTTCGCTCGCGC
TGTGCCCCCCCCTTGCCGCTCTCTCACGGTGCCCCCTCCAGCGGGAGATG
GCGGAGAAGTTCTTCGCCGAGCAGAAGTTGGAGCGCCGCTTAAAGAAGAT
AGCGACCGAGCTCGAGCCGGTTCGAGAATTCTACGAAGCTGAGGAAGAGC
ACCAGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7654:4517..5124-

>mRNA_H-canaliculatus_M_contigs7654.2.1 ID=mRNA_H-canaliculatus_M_contigs7654.2.1|Name=mRNA_H-canaliculatus_M_contigs7654.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=267bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7654:4517..5124- (Hapterophycus canaliculatus Oshoro7m male)
TTGCAGGTCCTGTACGACCCGTCCGAGACGACCTACGAGAACCTTCTGAG
AATTTTCTTCGGGAGACACGACCCAACTCAAGTGAACGGCCAGGGAAACG
ATACGGGCACGCAGTATAGAGCCGGGGTGTACTTCCACGACGAAGAACAG
CGGGAGATGGCGGAGAAGTTCTTCGCCGAGCAGAAGTTGGAGCGCCGCTT
AAAGAAGATAGCGACCGAGCTCGAGCCGGTTCGAGAATTCTACGAAGCTG
AGGAAGAGCACCAGCAG
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