mRNA_H-canaliculatus_M_contigs76533.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: UPF0029 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE6_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 1.230e-14 Identity = 28/32 (87.50%), Postives = 32/32 (100.00%), Query Frame = 1
Query: 31 RVVEKHPKARHNCWAWRGLGDDHRFSDDGEPG 126
RV+++HPKARH+CWAWRGLGDDHRFSDDGEPG
Sbjct: 61 RVLKEHPKARHSCWAWRGLGDDHRFSDDGEPG 92
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: UPF0029 (domain-containing protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / KCTC 2777 / LMG 1558 / NBRC 3245 / NCIMB 13370) TaxID=767434 RepID=H8L4N1_FRAAD) HSP 1 Score: 50.1 bits (118), Expect = 4.650e-6 Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1
Query: 46 HPKARHNCWAWRGLGDDHRFSDDGEPG 126
H ARH+CWAWR +G+D+RFSDDGEPG
Sbjct: 44 HADARHHCWAWR-MGEDYRFSDDGEPG 69
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: IMPACT (family member YigZ n=1 Tax=Pseudomonas carbonaria TaxID=2762745 RepID=A0A7U7IBJ9_9PSED) HSP 1 Score: 48.5 bits (114), Expect = 1.680e-5 Identity = 23/44 (52.27%), Postives = 27/44 (61.36%), Query Frame = 1
Query: 1 TPCKNICWFPRVVEKH--PKARHNCWAWRGLGDDHRFSDDGEPG 126
TP + + H P A HNCWAW+ LGD +RFSDDGEPG
Sbjct: 25 TPIASAAEAQAFIAAHSDPGASHNCWAWK-LGDQYRFSDDGEPG 67
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: IMPACT (family protein n=1 Tax=Castellaniella caeni TaxID=266123 RepID=UPI000830E309) HSP 1 Score: 48.1 bits (113), Expect = 2.430e-5 Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 1
Query: 43 KHPKARHNCWAWRGLGDDHRFSDDGEPG 126
+ P+A HNCWAW+ +GD +RFSDDGEPG
Sbjct: 41 RDPQATHNCWAWQ-VGDQYRFSDDGEPG 67
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: Putative (YigZ family protein n=1 Tax=Angulomicrobium tetraedrale TaxID=217068 RepID=A0A839Z4R3_9HYPH) HSP 1 Score: 47.8 bits (112), Expect = 3.280e-5 Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 1
Query: 34 VVEKHPKARHNCWAWRGLGDDHRFSDDGEPG 126
+ P A HNCWAWR +G ++RFSDDGEPG
Sbjct: 40 AAQSDPGANHNCWAWR-VGQNYRFSDDGEPG 69
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: IMPACT (family protein n=3 Tax=Pseudomonas viridiflava TaxID=33069 RepID=UPI000F03700B) HSP 1 Score: 47.4 bits (111), Expect = 4.590e-5 Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1
Query: 37 VEKH--PKARHNCWAWRGLGDDHRFSDDGEPG 126
+E+H P A HNCWAW+ +G +RFSDDGEPG
Sbjct: 37 IERHSDPAATHNCWAWK-VGQQYRFSDDGEPG 67
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Sinorhizobium medicae TaxID=110321 RepID=A6U5M1_SINMW) HSP 1 Score: 47.0 bits (110), Expect = 6.150e-5 Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query: 49 PKARHNCWAWRGLGDDHRFSDDGEPG 126
P A HNCWAWR +G ++RFSDDGEPG
Sbjct: 42 PAANHNCWAWR-VGQNYRFSDDGEPG 66
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: IMPACT (family protein n=2 Tax=unclassified Pseudomonas TaxID=196821 RepID=UPI001EDCBD2C) HSP 1 Score: 47.0 bits (110), Expect = 6.150e-5 Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query: 49 PKARHNCWAWRGLGDDHRFSDDGEPG 126
P A HNCWAW+ +GD +RFSDDGEPG
Sbjct: 43 PGASHNCWAWK-VGDQYRFSDDGEPG 67
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: Thymidylate (synthase n=62 Tax=Gammaproteobacteria TaxID=1236 RepID=W9T3L6_9PSED) HSP 1 Score: 47.0 bits (110), Expect = 6.240e-5 Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query: 49 PKARHNCWAWRGLGDDHRFSDDGEPG 126
P A HNCWAW+ LG+ +RFSDDGEPG
Sbjct: 43 PSATHNCWAWK-LGNQYRFSDDGEPG 67
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudomonas resinovorans NBRC 106553 TaxID=1245471 RepID=S6B0K3_PSERE) HSP 1 Score: 46.6 bits (109), Expect = 8.550e-5 Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query: 49 PKARHNCWAWRGLGDDHRFSDDGEPG 126
P A HNCWAW+ LG+ +RFSDDGEPG
Sbjct: 43 PAASHNCWAWK-LGNQYRFSDDGEPG 67 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76533.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs76533.1.1 >prot_H-canaliculatus_M_contigs76533.1.1 ID=prot_H-canaliculatus_M_contigs76533.1.1|Name=mRNA_H-canaliculatus_M_contigs76533.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=42bp TPCKNICWFPRVVEKHPKARHNCWAWRGLGDDHRFSDDGEPGback to top mRNA from alignment at H-canaliculatus_M_contigs76533:74..199+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs76533.1.1 ID=mRNA_H-canaliculatus_M_contigs76533.1.1|Name=mRNA_H-canaliculatus_M_contigs76533.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76533:74..199+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76533:74..199+ >mRNA_H-canaliculatus_M_contigs76533.1.1 ID=mRNA_H-canaliculatus_M_contigs76533.1.1|Name=mRNA_H-canaliculatus_M_contigs76533.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=126bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76533:74..199+ (Hapterophycus canaliculatus Oshoro7m male)back to top |