mRNA_H-canaliculatus_M_contigs76489.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs76489.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs76489.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: hypothetical (protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001BCA4BE5)

HSP 1 Score: 270 bits (689), Expect = 1.270e-90
Identity = 139/143 (97.20%), Postives = 140/143 (97.90%), Query Frame = 1

Query:    1 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKG+VTHKGKPIRLT DLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIK FTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQ HAKL
Sbjct:   44 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGQVTHKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQKHAKL 186

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: hypothetical (protein n=10 Tax=Bacteria TaxID=2 RepID=UPI001BC92265)

HSP 1 Score: 269 bits (688), Expect = 1.800e-90
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 1

Query:    1 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKG VTHKGKPIRLT DL AETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPAL+ELLKEALNMERNNRYQPLQNHAK+
Sbjct:   44 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGWVTHKGKPIRLTADLLAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALQELLKEALNMERNNRYQPLQNHAKM 186

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: hypothetical (protein n=2 Tax=Bacteria TaxID=2 RepID=UPI001E4DA9E0)

HSP 1 Score: 268 bits (685), Expect = 2.530e-90
Identity = 138/143 (96.50%), Postives = 140/143 (97.90%), Query Frame = 1

Query:    1 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKG+VTHKGKPIRLT DLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIK FTDKQMLRDFVTTRPAL+ELLKEALNMERNNRYQPLQ HAKL
Sbjct:   23 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGQVTHKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALQELLKEALNMERNNRYQPLQKHAKL 165

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: hypothetical (protein n=2 Tax=Terrabacteria group TaxID=1783272 RepID=UPI0002BC27D0)

HSP 1 Score: 272 bits (695), Expect = 3.610e-90
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 1

Query:    1 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVT KGKPIRLT DLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAK+
Sbjct:  138 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKM 280

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: hypothetical (protein n=2 Tax=Mycobacterium tuberculosis TaxID=1773 RepID=UPI0009461079)

HSP 1 Score: 270 bits (690), Expect = 1.190e-89
Identity = 139/143 (97.20%), Postives = 140/143 (97.90%), Query Frame = 1

Query:    1 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREK RVTHKGKPIRLT DLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQP QNHAK+
Sbjct:  121 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKCRVTHKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPPQNHAKM 263

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2M9XJE0_9LEPT)

HSP 1 Score: 267 bits (683), Expect = 1.920e-88
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 1

Query:    1 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLT DL AETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIK FTDKQMLRDFVTTRPAL+ELLKEALNMERNNRYQPLQ HAKL
Sbjct:  131 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTADLLAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALQELLKEALNMERNNRYQPLQKHAKL 273

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: hypothetical (protein n=1 Tax=Enterococcus faecalis TaxID=1351 RepID=UPI0010049E4C)

HSP 1 Score: 262 bits (670), Expect = 7.340e-88
Identity = 136/143 (95.10%), Postives = 137/143 (95.80%), Query Frame = 1

Query:    1 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            QIQEIQR PQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLT DL AETLQAR EWGPIFNILKEKNFQPRISYPAKLSFISEGEIK FTDKQMLRDFVTTRPAL+ELLKEALNMERNNRYQPLQ HAKL
Sbjct:   35 QIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTADLLAETLQARGEWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALQELLKEALNMERNNRYQPLQKHAKL 177

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: LINE-1 (retrotransposable element ORF1 protein n=59 Tax=cellular organisms TaxID=131567 RepID=LORF1_HUMAN)

HSP 1 Score: 267 bits (683), Expect = 1.530e-87
Identity = 138/143 (96.50%), Postives = 139/143 (97.20%), Query Frame = 1

Query:    1 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            QIQEIQR PQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVT KGKPIRLT DLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYF DKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAK+
Sbjct:  196 QIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFIDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKM 338

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: hypothetical (protein n=2 Tax=Terrabacteria group TaxID=1783272 RepID=UPI0010561756)

HSP 1 Score: 259 bits (663), Expect = 2.210e-87
Identity = 134/137 (97.81%), Postives = 134/137 (97.81%), Query Frame = 1

Query:   19 RMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            RMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIK FTDKQMLRDFVTTRPALKELLKEALNMERNN YQPLQ HAKL
Sbjct:    1 RMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALKELLKEALNMERNNWYQPLQKHAKL 137

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Match: Uncharacterized (protein n=15 Tax=cellular organisms TaxID=131567 RepID=A0A5F8A558_MACMU)

HSP 1 Score: 261 bits (668), Expect = 2.550e-86
Identity = 134/143 (93.71%), Postives = 137/143 (95.80%), Query Frame = 1

Query:    1 QIQEIQRMPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVDLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQMLRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL 429
            QIQEIQR PQRYSSRRATPRHII RFTKVEMKEK+LRAAREKGRVTHKGKPIRLT DLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIK FTDKQMLRDFVTTRPAL+E LKEALNMERNNRYQPLQ HAK+
Sbjct:  120 QIQEIQRTPQRYSSRRATPRHIIARFTKVEMKEKILRAAREKGRVTHKGKPIRLTADLSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKSFTDKQMLRDFVTTRPALQETLKEALNMERNNRYQPLQKHAKM 262

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs76489.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
hypothetical	1.270e-90	97.20	protein n=3 Tax=Bacteria TaxID=2 RepID=UPI001BCA4B...	[more]
hypothetical	1.800e-90	96.50	protein n=10 Tax=Bacteria TaxID=2 RepID=UPI001BC92...	[more]
hypothetical	2.530e-90	96.50	protein n=2 Tax=Bacteria TaxID=2 RepID=UPI001E4DA9...	[more]
hypothetical	3.610e-90	97.90	protein n=2 Tax=Terrabacteria group TaxID=1783272 ...	[more]
hypothetical	1.190e-89	97.20	protein n=2 Tax=Mycobacterium tuberculosis TaxID=1...	[more]
Uncharacterized	1.920e-88	96.50	protein (Fragment) n=3 Tax=cellular organisms TaxI...	[more]
hypothetical	7.340e-88	95.10	protein n=1 Tax=Enterococcus faecalis TaxID=1351 R...	[more]
LINE-1	1.530e-87	96.50	retrotransposable element ORF1 protein n=59 Tax=ce...	[more]
hypothetical	2.210e-87	97.81	protein n=2 Tax=Terrabacteria group TaxID=1783272 ...	[more]
Uncharacterized	2.550e-86	93.71	protein n=15 Tax=cellular organisms TaxID=131567 R...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs76489	contig	H-canaliculatus_M_contigs76489:94..525 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	61853.ENSNLEP00000024013
Preferred name	L1TD1
PFAMs	Tnp_22_dsRBD,Tnp_22_trimer,Transposase_22
Model size	432
Max annot lvl	33208\|Metazoa
Hectar predicted targeting category	other localisation
Exons	1
Evalue	3.54e-81
EggNOG OGs	2D3IM@1\|root,2SRQ0@2759\|Eukaryota,3ANQ2@33154\|Opisthokonta,3C1ER@33208\|Metazoa,3DHG5@33213\|Bilateria,48EEB@7711\|Chordata,49AXK@7742\|Vertebrata,3JNW0@40674\|Mammalia,35UP0@314146\|Euarchontoglires
Description	L1 transposable element dsRBD-like domain
Cds size	411
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854103.2757976-CDS-H-canaliculatus_M_contigs76489:93..504	1696854103.2757976-CDS-H-canaliculatus_M_contigs76489:93..504	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs76489 94..504 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854103.2919798-UTR-H-canaliculatus_M_contigs76489:504..525	1696854103.2919798-UTR-H-canaliculatus_M_contigs76489:504..525	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs76489 505..525 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs76489.1.1	prot_H-canaliculatus_M_contigs76489.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs76489 94..504 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs76489:94..525-
coding sequence from alignment at H-canaliculatus_M_contigs76489:94..525-

protein sequence of mRNA_H-canaliculatus_M_contigs76489.1.1

>prot_H-canaliculatus_M_contigs76489.1.1 ID=prot_H-canaliculatus_M_contigs76489.1.1|Name=mRNA_H-canaliculatus_M_contigs76489.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=137bp
MPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKGRVTHKGKPIRLTVD
LSAETLQARREWGPIFNILKEKNFQPRISYPAKLSFISEGEIKYFTDKQM
LRDFVTTRPALKELLKEALNMERNNRYQPLQNHAKL*

mRNA from alignment at H-canaliculatus_M_contigs76489:94..525-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs76489.1.1 ID=mRNA_H-canaliculatus_M_contigs76489.1.1|Name=mRNA_H-canaliculatus_M_contigs76489.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=432bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76489:94..525- (Hapterophycus canaliculatus Oshoro7m male)
CAAATTCAGGAAATACAGAGAATGCCACAAAGATACTCCTCAAGAAGAGC
AACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAA
AAATGTTAAGGGCAGCCAGAGAGAAAGGTCGGGTTACCCACAAAGGGAAG
CCCATCAGACTAACAGTGGATCTCTCGGCAGAAACCCTACAAGCCAGAAG
AGAGTGGGGGCCAATATTCAACATTCTTAAAGAAAAAAATTTTCAACCCA
GAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAA
TACTTTACAGACAAGCAAATGCTGAGAGATTTTGTCACCACCAGGCCTGC
CCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGT
ACCAGCCACTGCAAAATCATGCCAAATTGTAA

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76489:94..525-

>mRNA_H-canaliculatus_M_contigs76489.1.1 ID=mRNA_H-canaliculatus_M_contigs76489.1.1|Name=mRNA_H-canaliculatus_M_contigs76489.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=411bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76489:94..525- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCACAAAGATACTCCTCAAGAAGAGCAACTCCAAGACACATAATTGT
CAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGCAGCCAGAG
AGAAAGGTCGGGTTACCCACAAAGGGAAGCCCATCAGACTAACAGTGGAT
CTCTCGGCAGAAACCCTACAAGCCAGAAGAGAGTGGGGGCCAATATTCAA
CATTCTTAAAGAAAAAAATTTTCAACCCAGAATTTCATATCCAGCCAAAC
TAAGCTTCATAAGTGAAGGAGAAATAAAATACTTTACAGACAAGCAAATG
CTGAGAGATTTTGTCACCACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGA
AGCACTAAACATGGAAAGGAACAACCGGTACCAGCCACTGCAAAATCATG
CCAAATTGTAA