mRNA_H-canaliculatus_M_contigs7648.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7648.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7648.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7648.1.1 vs.
Match: Conserved (Cys-containing small protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS33_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 4.990e-43
Identity = 86/143 (60.14%), Postives = 102/143 (71.33%), Query Frame = 1 
Query:    1 MSARSEEEA-LAAELSSCMLSHYKYCAAGVLLGLPLSIHKRSYWPVTMAAVAGTAVDFKEASVNCAPQREAFMAYVARKGAEGPAKAKQGAPSTASAEDPTQASSGEAWPVEEQQGWSEKGWEQNFDTSSDGRESGTRGKNRW 426
            M  +S+EEA LAAELSSCMLSHYKYCAAGVLLGLPLS+HK+SYWPVT+AAVAGTA DFKE + +C PQREA MA++ARK A G AKA+Q A S  + E+P Q S  E WP E +       WEQ F     G+E    G ++W
Sbjct:    1 MREQSKEEAELAAELSSCMLSHYKYCAAGVLLGLPLSVHKKSYWPVTLAAVAGTAADFKEGTADCRPQREALMAFIARKNA-GQAKAQQEA-SAGTTENPGQHSPQEGWPGEGRXXXXXXXWEQTFHDRDGGKEVDREGGDKW 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7648.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Conserved4.990e-4360.14Cys-containing small protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7648contigH-canaliculatus_M_contigs7648:61..3245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog115417.EPrPW00000018826
Model size429
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.15e-05
EggNOG OGs2BT1U@1|root,2S1ZT@2759|Eukaryota,1MHS4@121069|Pythiales
Ec32 ortholog descriptionConserved Cys-containing small protein
Ec32 orthologEc-08_001970.1
Descriptionfunction. Source PGD
Cds size429
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854103.0991957-CDS-H-canaliculatus_M_contigs7648:60..3121696854103.0991957-CDS-H-canaliculatus_M_contigs7648:60..312Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7648 61..312 -
1696854103.116142-CDS-H-canaliculatus_M_contigs7648:654..7621696854103.116142-CDS-H-canaliculatus_M_contigs7648:654..762Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7648 655..762 -
1696854103.1286635-CDS-H-canaliculatus_M_contigs7648:3176..32451696854103.1286635-CDS-H-canaliculatus_M_contigs7648:3176..3245Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7648 3177..3245 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7648.1.1prot_H-canaliculatus_M_contigs7648.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7648 61..3245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7648.1.1

>prot_H-canaliculatus_M_contigs7648.1.1 ID=prot_H-canaliculatus_M_contigs7648.1.1|Name=mRNA_H-canaliculatus_M_contigs7648.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=143bp
MSARSEEEALAAELSSCMLSHYKYCAAGVLLGLPLSIHKRSYWPVTMAAV
AGTAVDFKEASVNCAPQREAFMAYVARKGAEGPAKAKQGAPSTASAEDPT
QASSGEAWPVEEQQGWSEKGWEQNFDTSSDGRESGTRGKNRW*
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mRNA from alignment at H-canaliculatus_M_contigs7648:61..3245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7648.1.1 ID=mRNA_H-canaliculatus_M_contigs7648.1.1|Name=mRNA_H-canaliculatus_M_contigs7648.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3185bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7648:61..3245- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCGCAAGGTCAGAGGAGGAAGCGTTGGCGGCGGAGCTTTCAAGTTG
CATGCTTTCACATTACAAGGTCGGTCCACTATGCAAGAACAAATAACATA
TGAACACACGAAAAATATCTCCTCTTCCCAACAACGGTAAGACTACGACA
AGTGTTTTTCGACGCGGGGTGTTTCGTCTTCTCCCTCTCGCTGACTCTGT
GTTGCCTTATGGATTCTTATTGACCAAAGCCCACATGCTGTATCGCGGGG
AGGGATCATGCGCAAATTGCTGTACGATGCAATACAAGACTACTCGACTT
CAAGCACGCATAGTGGAGAGTGCCACCAACTATGATTTCGAGCACCCGAT
GATGATGCCGCAAAAGCACTAAAACAGGTGAATCGGTACCGGGCTGTATC
TTCTCACTTCCCCTCCGGCTTTCCTGTATACTAGGGATCCAGTCATCGTG
CCTCCTCTATTTGTGAATCATCATTAATTTCCCGCTCCATCTGCTGCAGA
TGTCAGCATTTACATACTTCCACATTCCGTATTTCGTATTTCGAGCACAC
CGCAGGCGATATTTGAATTTTCGAGCGCACCGCAGGCGAGCAGCGTGCAG
GTAACTCAGCACTGACGATAGAGAGAATGGGTATTATAATGAGCCAAGCG
GACATTTTATCTAACAGAGCATTCCATCTGCGATGTTTTGCCTGTAGGAG
GCCCTATGTGTTTGGGACGGCGCGTTTTTGCCACCCGTACCATATTATTT
GGTGGTGAAAAATGTTTTCACTGCGTACGGGGGGGGGGGGGATGGGACCC
CCGGGTGAGCTCTGAAAAAGACCTTTCTGCGGTCGCTGCTGTTCTTGGTG
CGCTCCAAACACTTCCCAGCAGGAGGAGTCGACAAAGATTTCTCGCCACA
GAAGCAAGCAACGCCTACAAAGAATTGACACAAGCACAGAAAGCGGTGTT
TCTTTTGCAATATGCCCTCGGCAGCAGTGGGGCTACGGGCGACTTGGTCG
GGACGGCAAAGAGTGCGGGGCGGATGCTCCTCTGTCTCAATGTTGCCTAC
ATGTACAACCACATGTCACATTCTAGCCGCTGACGCGCTTGTGATCAAGA
CAATTTTTGCCGCCGATCACGCCCAGCAGCCCCTCACCTCCTCCAGAAAC
CTCACGCGCTCACCCTACTTTCATATACCTGTGGGCCTGCCTGCTTGCTG
GGTCGGCCGTTCTACGGATGCTGAGTTGCCGTGCTGCTGATTTAACGTGA
AGCACGCCACCAAACGGACACGCCACAGCAGCCCTTCGGTGTGCATTGGT
GGAAACCACGAGTAAACGGCATAATGTACCCGGAATTGCCCGAGAAAACG
TCGTACAACCCGGCCATTTCTTCCCGGAGCCCCGCGACACCATAATTACG
CATCGTGTCGTACTTTTGACCCCTTAAAAGCTATCGGATCGACACTTCTG
TGGTCCTCTGTAGATCTCTTGCTTTCCCCCCCCAAATTTTTGTTTTTGAT
GACCAGGACAAATGCAGTTTGAGGCACCCTACTCGCGCGACCGAAGCAGT
GGTTACTATATAGAGCCTTTCCCCCCCTCAGGGATCAAAGGGAAGAAAAG
GCTCGCGGCTTCGCCGCTCGCTCGGCTCATCGTAAGAACTCTCTCTCCGA
GCCCTTGGATTTTCCTTTTACATTAGTCACCTCTTTTAACAAAAGAAAAT
CAACAACTTCCGAGTCTCAGCAGGCTTGGGTCGAATTTTAAACAACGAAG
GATCAAGCCGTAAAGACTGGATAAGACACGAGAGATAAAAACACACGAAA
AGGCGGGGAGATTCGGAAAGGTGAAAAAAGCACGGATTGTAATGAGATTG
TGACGAGATGAACGAGGTCGAAAGTACCAATTTTACTGTGACAAATGAGA
TAGGCGATGCAATCATCCTTGCTTTTTCCCTTCCTGTGAGATGAGTCGCC
ATGTGATTGAAATCATTGTCCAGGCACTTTATGATCAACGCCTCGAAAGT
ATGTCAGCAGTGGACCTGAAGGAACCGTACATGATGGCTTTGAAGAGATG
GATGTGATCAGCATGCCGACGCCAATCCTTCTTTGCTGTGCACGTCATAC
AGTTTACGAAGATGACTCATATTTGAATAAACCTGAGAGCACGCACGTTC
TTGCGCCAAGAGCAGATGTTCAGAGGGACAGAACGTACACTTTTGCAAAG
CGTTTCCACAGAGGCTCAACTATCTGTCGGAGAGAGAGCTACGCACGGCA
CAACCGTGGGATCCAAAAGCCGGCTGCTCCGAATGCAAATGGGAGCGTGT
GCGGGGAGCTAACGCGAAATGGTGAACTAGATCCTCGCTGCTTTCACCAT
CCGTATACACGCGAGAGGTATTTTTCTCATGGAAGCCATCCAGCAGCAGT
CGTCGGTATCCAAGTGCTGCTTCGTTGGCTCTGGTGTTAAAAGCCCGCTG
CATCTGCCCGGCTTGTTCAATCCCTCCGCCCAGTACTGCGCGGCCGGAGT
TCTCCTGGGCCTCCCGCTGAGCATCCACAAAAGAAGCTACTGGCCCGTGA
CCATGGCAGCTGTGGCGGGGACGGCGGTGGACTTCAAGGAGGTGAAAGGT
TCAGCAGAGGCTCAGATGCTGTTGCTTTGTGTCGGCGTGCCAGCGCACCT
GGCGACGTTCGCTTTGCCTTCAGTCCTTGCCTTTGCTCGCCTGCTGCGAG
AGAATCGCCATTGGTTTTGGGATCCGAGTCTCCGTTACAGAGCGCGTAGT
TGATGCCGTACACCTCGCACATTTTGGCACGAGAATAGGATGTAGGGGGT
TGATTCTCTCGAGAACCTCTGTACTTCTTGCTCGATGCGGTTGTGCTTAT
TCCCCGTCCCTAGTAACGCTTCTGTTTCGTCGCCGTTACCGTTCTCTCTC
GCGGGTGGTCTACCGACTATTTCGAATGGACAGGCTAGTGTGAACTGCGC
GCCTCAAAGAGAGGCGTTTATGGCATATGTAGCTCGAAAGGGTGCCGAGG
GACCGGCGAAGGCGAAACAAGGAGCACCATCCACGGCCAGTGCAGAAGAC
CCGACACAAGCTTCCTCGGGAGAGGCCTGGCCTGTCGAGGAGCAGCAGGG
CTGGTCAGAAAAGGGATGGGAGCAGAACTTCGACACCAGTAGCGACGGCC
GAGAGTCAGGAACGAGGGGGAAAAACAGGTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7648:61..3245-

>mRNA_H-canaliculatus_M_contigs7648.1.1 ID=mRNA_H-canaliculatus_M_contigs7648.1.1|Name=mRNA_H-canaliculatus_M_contigs7648.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=429bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7648:61..3245- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCGCAAGGTCAGAGGAGGAAGCGTTGGCGGCGGAGCTTTCAAGTTG
CATGCTTTCACATTACAAGTACTGCGCGGCCGGAGTTCTCCTGGGCCTCC
CGCTGAGCATCCACAAAAGAAGCTACTGGCCCGTGACCATGGCAGCTGTG
GCGGGGACGGCGGTGGACTTCAAGGAGGCTAGTGTGAACTGCGCGCCTCA
AAGAGAGGCGTTTATGGCATATGTAGCTCGAAAGGGTGCCGAGGGACCGG
CGAAGGCGAAACAAGGAGCACCATCCACGGCCAGTGCAGAAGACCCGACA
CAAGCTTCCTCGGGAGAGGCCTGGCCTGTCGAGGAGCAGCAGGGCTGGTC
AGAAAAGGGATGGGAGCAGAACTTCGACACCAGTAGCGACGGCCGAGAGT
CAGGAACGAGGGGGAAAAACAGGTGGTGA
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