mRNA_H-canaliculatus_M_contigs7646.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7646.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7646.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7646.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL26_ECTSI)

HSP 1 Score: 524 bits (1350), Expect = 5.740e-183
Identity = 280/376 (74.47%), Postives = 304/376 (80.85%), Query Frame = 1 
Query:  262 DLNEVG-LQLQGLSDNTRMRAPAGMYEFGAEDFRFDVERDDVDLFPAPDIPERPAGMTRKPLKLPEFGNALTACKGWWTEEFTFRGFGIGFVKPVFRGLLLRPDFGLGVRLPVTLHFRSWESREALPAVALSFFVLWPPAVQVSQAMSYPAELLQEWATTAARKIAVPSKEVIQVRRRKEAVQRLGVSIGVRYSSPYGFQWWLAPYFFLLPGVRVLWTLYQSMMTMLLSSLALMQRSDASALDRQNRKDENQEALWVVALRSWAAEKTSGLGYSLYYSGNRLGGAAYVNFMPFFLPTFKANRFKSAEKDNVEEPSIEHQA-----AVSQIPDDKNAPEVAVQRVLIEVDQDKRSVELNESDVAR-REGAVLQARSA 1368
            DLNEVG LQL+   D T +  PAG YEFGAEDFRFD+ R+DVDLFPAPDI ER +   RKPLKLPE GNALTACKGWW EEFTFRGFGIGFVKPVFRGLLLRPD G+GVRLPVTLHFRSWESREALP+VALS FVLWPPAVQVSQAMSYPAELLQE ATTAARKI VPSKE IQVRRRKEAVQRLGVSIGVRYSS YGFQWWL+PYFFLLPGVRVLWTLYQSMMT+LLSSLALMQRSDAS LDR+N + ENQEALWVVALRSWAAEKTSGLGY+LY SGNRLGGAAYVNFMPFFLPTF+A    S +   V++P  E +        + + +D    E     V + V  D    E N ++  + REGAVLQ  SA
Sbjct:    6 DLNEVGGLQLESPPDTTGIAFPAGTYEFGAEDFRFDLGREDVDLFPAPDIYERGSYRARKPLKLPELGNALTACKGWWAEEFTFRGFGIGFVKPVFRGLLLRPDLGVGVRLPVTLHFRSWESREALPSVALSLFVLWPPAVQVSQAMSYPAELLQELATTAARKIVVPSKEAIQVRRRKEAVQRLGVSIGVRYSSTYGFQWWLSPYFFLLPGVRVLWTLYQSMMTLLLSSLALMQRSDASGLDRENGRAENQEALWVVALRSWAAEKTSGLGYALYLSGNRLGGAAYVNFMPFFLPTFRAAT--SRDSSGVKDPGAEQREQGVDDVAAPVQEDAGTREAVPSEVFVGVTPDGCGAESNATEAEQQREGAVLQPISA 379
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BLAST of mRNA_H-canaliculatus_M_contigs7646.2.1 vs.
Match: Peroxin/Ferlin (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 5.190e-33
Identity = 125/425 (29.41%), Postives = 186/425 (43.76%), Query Frame = 1 
Query:   19 DGSAALPPKQILCPDEWTWASEWKID--GSGGRDIGGWEYSKDLTKFNSSRVPRGKKLADRF-RRRRWVRAMQCTQPQREQQQQDLNEVGLQLQGLSDNTRMRAPAG---MYEFGAEDFRFDVE--------RDDVDLFPAPDIPER---------------PAGMT---------------------RKPLKLPE--FGNALTACKGWWTEEFTFRGFGIGFVKPVFRGLLLR---PDFGLGVRLPVTLHFRSWESREALPAVALSFFVLWPPAVQVSQAMSYPAELLQEWA--------------TTAARKIA-----------VPSKEVIQVRRRKEAVQRLGVSIGVRYSSPYGFQWWLAPYFFLLPGVRVLWTLYQSMMTMLLSSLALMQRSDASALDRQNRKDENQEALWVVALRSWAA 1053
            DG+ A PP ++  PD W W  +W +D   +   D  GW +  D        + +G+ +   + RRRRWVR M+     R     D +  G  ++ L ++ R RA A    ++   A +   D          R  V     P   E                PA +T                     RK L   +   G+AL     WW  EF FRGFG+G VKP+F G +LR    D G+G+R+P+T HF  WE+R  LP ++ S F  WP  VQ S  MS  +  LQ+WA              T   R+ A             +K+ +Q   R+  V R+GV++ VR S+ YG Q W +PY FLLPGVR++     S + ++L +     R  A+A++ +  ++  + A    A+  WA+
Sbjct:  116 DGTPATPPSEVQLPDMWLWEGDWSVDCDHTPTCDEAGW-HDLDDDSSTVKELTKGENIKSVYTRRRRWVRTMRL----RSGASTDSSLRG--IKALKEHPRGRAAAAATALHHAAAANTSTDTTVQATGDAARAGVARPVQPADAEEGRRKRRASGIATVAVPANVTXXXXXXXXXXXGDXXXXXXAERKRLARRQRPLGSALAQ---WWEREFVFRGFGVGLVKPLFAGYMLRGNLSDMGVGLRMPITSHFNCWEARRDLPLISSSLFFFWPLKVQTSFTMSVASAQLQDWAGGVKGLWLALADSFTAEGRRRAKIWLSGSGEGGAFAKKPVQ---RRTTVTRVGVTVSVRLSAEYGLQVWASPYIFLLPGVRIITDALSSALALILGT-----RDTAAAVEARRAQEAARLASATYAVALWAS 522
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7646.2.1 vs.
Match: Peroxin/Ferlin (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KR13_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 6.210e-20
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:   16 QDGSAALPPKQILCPDEWTWASEWKIDGSGGRDIGGWEYSKDLTKFNSSR 165
            +DGS+ALPP+Q+LCPDEWTWASEWKIDGSGGRD  GWEYSK L KFNS R
Sbjct:  140 KDGSSALPPRQVLCPDEWTWASEWKIDGSGGRDEAGWEYSKSLMKFNSFR 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7646.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.740e-18374.47protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL26... [more]
Peroxin/Ferlin5.190e-3329.41domain-containing protein n=1 Tax=Tribonema minus ... [more]
Peroxin/Ferlin6.210e-2082.00domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7646contigH-canaliculatus_M_contigs7646:2368..4968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009036994.1
PFAMsECH_1
Model size1371
Max annot lvl2759|Eukaryota
KEGG rclassRC01078
KEGG koko:K13238
KEGG ReactionR04756
KEGG Pathwayko00071,map00071
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004165,GO:0004300,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0016042,GO:0016054,GO:0016829,GO:0016835,GO:0016836,GO:0016853,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0032787,GO:0034440,GO:0043436,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0046395,GO:0055114,GO:0071704,GO:0072329,GO:1901575
Exons5
Evalue5.34e-10
EggNOG OGsCOG1024@1|root,KOG1683@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000860.1
EC5.3.3.8
Descriptionenoyl-CoA hydratase activity
Cds size1371
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.825835-CDS-H-canaliculatus_M_contigs7646:2367..27731696854102.825835-CDS-H-canaliculatus_M_contigs7646:2367..2773Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7646 2368..2773 -
1696854102.8402143-CDS-H-canaliculatus_M_contigs7646:3192..33771696854102.8402143-CDS-H-canaliculatus_M_contigs7646:3192..3377Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7646 3193..3377 -
1696854102.8557107-CDS-H-canaliculatus_M_contigs7646:3596..41151696854102.8557107-CDS-H-canaliculatus_M_contigs7646:3596..4115Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7646 3597..4115 -
1696854102.8675916-CDS-H-canaliculatus_M_contigs7646:4259..43541696854102.8675916-CDS-H-canaliculatus_M_contigs7646:4259..4354Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7646 4260..4354 -
1696854102.879046-CDS-H-canaliculatus_M_contigs7646:4802..49681696854102.879046-CDS-H-canaliculatus_M_contigs7646:4802..4968Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7646 4803..4968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7646.2.1prot_H-canaliculatus_M_contigs7646.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7646 2368..4968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7646.2.1

>prot_H-canaliculatus_M_contigs7646.2.1 ID=prot_H-canaliculatus_M_contigs7646.2.1|Name=mRNA_H-canaliculatus_M_contigs7646.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=457bp
MTLFCQDGSAALPPKQILCPDEWTWASEWKIDGSGGRDIGGWEYSKDLTK
FNSSRVPRGKKLADRFRRRRWVRAMQCTQPQREQQQQDLNEVGLQLQGLS
DNTRMRAPAGMYEFGAEDFRFDVERDDVDLFPAPDIPERPAGMTRKPLKL
PEFGNALTACKGWWTEEFTFRGFGIGFVKPVFRGLLLRPDFGLGVRLPVT
LHFRSWESREALPAVALSFFVLWPPAVQVSQAMSYPAELLQEWATTAARK
IAVPSKEVIQVRRRKEAVQRLGVSIGVRYSSPYGFQWWLAPYFFLLPGVR
VLWTLYQSMMTMLLSSLALMQRSDASALDRQNRKDENQEALWVVALRSWA
AEKTSGLGYSLYYSGNRLGGAAYVNFMPFFLPTFKANRFKSAEKDNVEEP
SIEHQAAVSQIPDDKNAPEVAVQRVLIEVDQDKRSVELNESDVARREGAV
LQARSA*
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mRNA from alignment at H-canaliculatus_M_contigs7646:2368..4968-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7646.2.1 ID=mRNA_H-canaliculatus_M_contigs7646.2.1|Name=mRNA_H-canaliculatus_M_contigs7646.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2601bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7646:2368..4968- (Hapterophycus canaliculatus Oshoro7m male)
ATGACTTTGTTCTGCCAGGACGGCTCCGCGGCTCTTCCGCCGAAACAAAT
CCTTTGTCCCGATGAATGGACGTGGGCGAGCGAATGGAAGATTGATGGAT
CTGGGGGCAGGGATATTGGGGGCTGGGAATACTCGAAGGACCTGACGAAG
TTTAACTCGTCTCGCGGTGAGCGGTTGTTCTGGTACTGAGACTGTGGCTA
CAAGTATAGCTTCATGGCCTAAGATATCCTTCAACTCTTGCGTTAGGTCT
CTCGACTGAGGAGCTACAAGTGCAAAATTGTGCCCACGGGCACCTTCGTC
GCATGAGGACCCGCCTACCGCCTTTGTAAAAAAAAATGTCCATGAAGTGT
CAGCTGAGGTCACCGACCGTCTTAAATTGTAGCTTTCCGAACTGGCGAGA
GCAGAGTCGTTTCTTGAAAGTGCGTTGGTGGTTCTGGTTCTGAACCGTGT
GCAAACCTTCAGGAAAAGGCACCAAGACTTCTGCTGTCCGTGAGGTCTAG
ACAGGGTCCAGCGAAATCGAATCACAGCGGCTTTCAGACCGGTCTTGATC
GGTCCGCCGGGTGAGGATTCACTCAGCTGTTGATACGGCGTTGGTGTTCC
GGAAACCTTTGCAGTGCCCAGGGGGAAAAAGCTGGCAGATCGATTCCGGC
GGCGAAGATGGGTGCGGGCAATGCAATGCACGCAACCTCAGCGGGAGCAG
CAGCAACAGGTGAGATACTGAAGGTAGCCCTTGTTGTGTTCCGTGCTTTG
TTTTCCAGACACCACGCGACACTGCCCGAACGACTTCGGCAACGATGTAA
GCGCTTTCCTGAATCCCCCCAGCTCCTTTTGCGATTTTCGGCCCAAATTT
CAGGACTTGAACGAGGTTGGGCTTCAGCTCCAAGGCCTCTCAGACAACAC
GAGGATGAGGGCTCCAGCCGGCATGTACGAGTTCGGCGCCGAAGACTTCC
GGTTCGACGTGGAGAGAGACGACGTGGACCTCTTCCCCGCCCCGGACATC
CCCGAGCGCCCCGCCGGGATGACGAGGAAACCGCTGAAACTCCCAGAGTT
CGGAAACGCTCTGACGGCGTGCAAAGGCTGGTGGACTGAGGAATTCACGT
TTCGAGGGTTCGGAATCGGCTTCGTCAAGCCGGTGTTTAGAGGCCTCCTT
CTCCGACCCGATTTCGGGCTGGGCGTCCGTCTGCCGGTGACGCTGCATTT
TCGCTCATGGGAGAGCCGGGAAGCGCTTCCGGCCGTGGCGCTCTCATTCT
TTGTTCTGTGGCCGCCCGCCGTGCAAGTGTCGCAGGCGATGTCGTACCCG
GCGGAGCTGCTGCAGGAGTGGGCGACCACTGCGGCCAGAAAGATCGCTGT
GCCATCGAAGGAGGTTATCCAGGTCAGATGAAAGCCGCCGCTGTTCTCCG
CCGCCGATCATGCAACCTGTGGTAAGCCGTACGGTAGTGATGTTCCTCCT
AATGCTTGGTGAGGTTGTCGTGTTTCTGTGAGGGTGACGTGTTTTGACAT
CGGTCAGATCATGTCATTTTTCATTTTCCGCGCGGTTGTGAATCTTGCGG
CCTGATTTGTCTGCGCACTCATGCAATCTTCACACTCACAGGTACGGCGC
CGTAAGGAGGCCGTGCAGAGACTGGGGGTCAGCATTGGGGTGCGGTACTC
ATCACCGTACGGCTTTCAGTGGTGGCTGGCTCCGTATTTCTTCCTGCTTC
CTGGGGTTCGCGTTCTTTGGACCCTTTATCAGTCAATGATGACGATGCTA
CTTTCAAGCTTGGCTCTGATGCAGAGGTACGTTTTGGTTTCGTTTGTGTG
TGACGCAGTCGGTGGATGGCCGTCACTCCTTCGGAACCTGGATCGCCGCC
CCCAGCGCAAGAGGTCAATGGCTAATGCAGGAAAAAACTACAACGCCGGG
CACTCGTCGACTCGCTGCATGAATGGGCAGAAGCTGCGCGTAGCTCAAAT
GACACGCTCCTTGTAGGTTCACCCTTCTGCTGTTCGTCATTAGCCTTCAT
TTAGCACAACTGAATGACCGCTGCGTGTGGTTTTTGGCTCAAGGTGCGGA
AACATGTCGGGTGTGTATTTGGTATCGCGTTTAACTTCCCGCGCCCAAAT
ACAATTGTGCGAACATGCCCAGGAGGTTGTGACATCCGTGGTAAAGAGTA
AATTACACATAACAAAATAAAATTGTTGGTGTGGGTGGCACGCAGATCGG
ATGCTAGTGCGCTGGACAGGCAGAACCGGAAAGACGAAAATCAAGAAGCA
CTTTGGGTTGTGGCGCTGCGGAGCTGGGCAGCTGAGAAAACATCGGGACT
GGGCTACTCCTTGTACTATTCGGGGAATCGTTTAGGGGGGGCTGCCTACG
TGAACTTCATGCCATTCTTCCTCCCAACGTTCAAAGCAAACCGATTCAAG
TCGGCCGAGAAGGATAATGTCGAGGAACCGAGCATAGAGCACCAGGCTGC
GGTGTCACAGATTCCGGATGACAAGAATGCGCCAGAAGTTGCCGTTCAGA
GGGTCCTCATTGAAGTAGACCAAGACAAGCGCAGCGTTGAGTTGAACGAA
TCCGATGTTGCGCGGCGCGAGGGCGCCGTGTTGCAAGCACGCTCTGCTTA
G
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7646:2368..4968-

>mRNA_H-canaliculatus_M_contigs7646.2.1 ID=mRNA_H-canaliculatus_M_contigs7646.2.1|Name=mRNA_H-canaliculatus_M_contigs7646.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1371bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7646:2368..4968- (Hapterophycus canaliculatus Oshoro7m male)
ATGACTTTGTTCTGCCAGGACGGCTCCGCGGCTCTTCCGCCGAAACAAAT
CCTTTGTCCCGATGAATGGACGTGGGCGAGCGAATGGAAGATTGATGGAT
CTGGGGGCAGGGATATTGGGGGCTGGGAATACTCGAAGGACCTGACGAAG
TTTAACTCGTCTCGCGTGCCCAGGGGGAAAAAGCTGGCAGATCGATTCCG
GCGGCGAAGATGGGTGCGGGCAATGCAATGCACGCAACCTCAGCGGGAGC
AGCAGCAACAGGACTTGAACGAGGTTGGGCTTCAGCTCCAAGGCCTCTCA
GACAACACGAGGATGAGGGCTCCAGCCGGCATGTACGAGTTCGGCGCCGA
AGACTTCCGGTTCGACGTGGAGAGAGACGACGTGGACCTCTTCCCCGCCC
CGGACATCCCCGAGCGCCCCGCCGGGATGACGAGGAAACCGCTGAAACTC
CCAGAGTTCGGAAACGCTCTGACGGCGTGCAAAGGCTGGTGGACTGAGGA
ATTCACGTTTCGAGGGTTCGGAATCGGCTTCGTCAAGCCGGTGTTTAGAG
GCCTCCTTCTCCGACCCGATTTCGGGCTGGGCGTCCGTCTGCCGGTGACG
CTGCATTTTCGCTCATGGGAGAGCCGGGAAGCGCTTCCGGCCGTGGCGCT
CTCATTCTTTGTTCTGTGGCCGCCCGCCGTGCAAGTGTCGCAGGCGATGT
CGTACCCGGCGGAGCTGCTGCAGGAGTGGGCGACCACTGCGGCCAGAAAG
ATCGCTGTGCCATCGAAGGAGGTTATCCAGGTACGGCGCCGTAAGGAGGC
CGTGCAGAGACTGGGGGTCAGCATTGGGGTGCGGTACTCATCACCGTACG
GCTTTCAGTGGTGGCTGGCTCCGTATTTCTTCCTGCTTCCTGGGGTTCGC
GTTCTTTGGACCCTTTATCAGTCAATGATGACGATGCTACTTTCAAGCTT
GGCTCTGATGCAGAGATCGGATGCTAGTGCGCTGGACAGGCAGAACCGGA
AAGACGAAAATCAAGAAGCACTTTGGGTTGTGGCGCTGCGGAGCTGGGCA
GCTGAGAAAACATCGGGACTGGGCTACTCCTTGTACTATTCGGGGAATCG
TTTAGGGGGGGCTGCCTACGTGAACTTCATGCCATTCTTCCTCCCAACGT
TCAAAGCAAACCGATTCAAGTCGGCCGAGAAGGATAATGTCGAGGAACCG
AGCATAGAGCACCAGGCTGCGGTGTCACAGATTCCGGATGACAAGAATGC
GCCAGAAGTTGCCGTTCAGAGGGTCCTCATTGAAGTAGACCAAGACAAGC
GCAGCGTTGAGTTGAACGAATCCGATGTTGCGCGGCGCGAGGGCGCCGTG
TTGCAAGCACGCTCTGCTTAG
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