mRNA_H-canaliculatus_M_contigs7635.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7635.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7635.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7635.1.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8V9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.170e-17
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 QTKELHNGRAAMMGIAGLVTHNLITGGMPAFEQISRGVYTGGI 129
            Q KELHNGRAAMMGI GLVTHN +TGGMPAFEQISRGVY+GGI
Sbjct:  169 QLKELHNGRAAMMGITGLVTHNFLTGGMPAFEQISRGVYSGGI 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7635.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Light1.170e-1788.37harvesting complex protein n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7635contigH-canaliculatus_M_contigs7635:145..279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G8V9
PFAMsChloroa_b-bind
Model size135
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.93e-18
EggNOG OGs2CSK6@1|root,2S49Q@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
Cds size135
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854102.1002831-CDS-H-canaliculatus_M_contigs7635:144..2791696854102.1002831-CDS-H-canaliculatus_M_contigs7635:144..279Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7635 145..279 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7635.1.1prot_H-canaliculatus_M_contigs7635.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7635 145..279 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7635.1.1

>prot_H-canaliculatus_M_contigs7635.1.1 ID=prot_H-canaliculatus_M_contigs7635.1.1|Name=mRNA_H-canaliculatus_M_contigs7635.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=45bp
QTKELHNGRAAMMGIAGLVTHNLITGGMPAFEQISRGVYTGGIQ*
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mRNA from alignment at H-canaliculatus_M_contigs7635:145..279+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7635.1.1 ID=mRNA_H-canaliculatus_M_contigs7635.1.1|Name=mRNA_H-canaliculatus_M_contigs7635.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7635:145..279+ (Hapterophycus canaliculatus Oshoro7m male)
CAGACCAAGGAGCTCCACAACGGGCGCGCAGCTATGATGGGCATCGCAGG
ACTGGTGACCCACAACCTCATCACCGGCGGCATGCCCGCATTCGAACAGA
TCTCGCGCGGAGTTTACACCGGTGGCATCCAGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7635:145..279+

>mRNA_H-canaliculatus_M_contigs7635.1.1 ID=mRNA_H-canaliculatus_M_contigs7635.1.1|Name=mRNA_H-canaliculatus_M_contigs7635.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=135bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7635:145..279+ (Hapterophycus canaliculatus Oshoro7m male)
CAGACCAAGGAGCTCCACAACGGGCGCGCAGCTATGATGGGCATCGCAGG
ACTGGTGACCCACAACCTCATCACCGGCGGCATGCCCGCATTCGAACAGA
TCTCGCGCGGAGTTTACACCGGTGGCATCCAGTAA
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