mRNA_H-canaliculatus_M_contigs76311.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76311.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76311.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase complex catalytic subunit SEC11C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRQ0_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.200e-26
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL+NGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK
Sbjct:   58 SGSMEPAFQRGDILFLHNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 107
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BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase complex catalytic subunit SEC11C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A835Z4U9_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.480e-23
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFLNN D+P+R GEVVVFKIKDR+IPIVHR+M VHEK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRIMKVHEK 106
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BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase I n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWE0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.480e-23
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFLNN D+P+R GE+VVFKIKDR+IPIVHRVM VHEK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVMKVHEK 106
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BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase I n=3 Tax=Pelagomonadales TaxID=54409 RepID=F0YAE9_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 1.220e-22
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFLNN D P+R GEVVVFKIKDR+IPIVHRVM VHEK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDNPIRVGEVVVFKIKDRDIPIVHRVMKVHEK 106
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BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase complex catalytic subunit SEC11C n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVP6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.270e-22
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFLNN D+P+R GEVVVFKIKDR+IPIVHRV+ VHEK
Sbjct:   57 SGSMEPAFQRGDILFLNNQDDPIRVGEVVVFKIKDRDIPIVHRVLKVHEK 106
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BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase I n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M735_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.300e-22
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL N D+P+RAGE+VVFKIKDR+IPIVHRVM VHEK
Sbjct:   57 SGSMEPAFQRGDILFLTNQDDPIRAGEIVVFKIKDRDIPIVHRVMKVHEK 106
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase complex catalytic subunit SEC11C n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QND9_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 2.660e-22
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL N  +P+RAGEVVVFKIKDREIPIVHRVM VHEK
Sbjct:   58 SGSMEPAFQRGDILFLTNHQDPIRAGEVVVFKIKDREIPIVHRVMKVHEK 107
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFR1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.310e-22
Identity = 41/50 (82.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFLNN D+P+R GE+VVFKIKDR+IPIVHRV+ VH+K
Sbjct:   58 SGSMEPAFQRGDILFLNNQDDPIRVGEIVVFKIKDRDIPIVHRVLEVHQK 107
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase complex catalytic subunit SEC11C n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSB0_9ARCH)

HSP 1 Score: 87.0 bits (214), Expect = 1.440e-21
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   10 MEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            MEPAFQRGDILFL N D P+RAGE+VVFKIKDR+IPIVHRVM VHEK
Sbjct:    1 MEPAFQRGDILFLTNHDNPIRAGEIVVFKIKDRDIPIVHRVMKVHEK 47
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Match: Signal (peptidase complex catalytic subunit SEC11C n=2 Tax=Pinguiochrysidaceae TaxID=1004268 RepID=A0A7S1U989_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 6.000e-21
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1 
Query:    1 SGSMEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK 150
            SGSMEPAFQRGDILFL+N D P+R GE+VVFKIKDR+IPIVHRV  VHEK
Sbjct:   58 SGSMEPAFQRGDILFLSNHDSPIRVGEIVVFKIKDRDIPIVHRVTKVHEK 107
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76311.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Signal3.200e-2698.00peptidase complex catalytic subunit SEC11C n=2 Tax... [more]
Signal6.480e-2386.00peptidase complex catalytic subunit SEC11C n=2 Tax... [more]
Signal6.480e-2386.00peptidase I n=1 Tax=Chromulina nebulosa TaxID=9678... [more]
Signal1.220e-2288.00peptidase I n=3 Tax=Pelagomonadales TaxID=54409 Re... [more]
Signal1.270e-2286.00peptidase complex catalytic subunit SEC11C n=1 Tax... [more]
Signal1.300e-2286.00peptidase I n=1 Tax=Spumella elongata TaxID=89044 ... [more]
Signal2.660e-2288.00peptidase complex catalytic subunit SEC11C n=1 Tax... [more]
Signal5.310e-2282.00peptidase I n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
Signal1.440e-2185.11peptidase complex catalytic subunit SEC11C n=1 Tax... [more]
Signal6.000e-2182.00peptidase complex catalytic subunit SEC11C n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76311contigH-canaliculatus_M_contigs76311:360..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRQ0
Preferred nameSEC11C
PFAMsPeptidase_S24
Model size153
Max annot lvl2759|Eukaryota
KEGG koko:K10686,ko:K13280
KEGG Pathwayko03060,ko04120,map03060,map04120
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0016787,GO:0019538,GO:0031090,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:0140096,GO:1901564,GO:1902494,GO:1905368
Exons1
Evalue5.96e-25
EggNOG OGsCOG0681@1|root,KOG3342@2759|Eukaryota
EC3.4.21.89,6.2.1.45
Descriptionsignal peptide processing
Cds size144
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.7410545-UTR-H-canaliculatus_M_contigs76311:359..3681696854101.7410545-UTR-H-canaliculatus_M_contigs76311:359..368Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76311 360..368 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.7560747-CDS-H-canaliculatus_M_contigs76311:368..5121696854101.7560747-CDS-H-canaliculatus_M_contigs76311:368..512Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76311 369..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76311.1.1prot_H-canaliculatus_M_contigs76311.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76311 369..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76311.1.1

>prot_H-canaliculatus_M_contigs76311.1.1 ID=prot_H-canaliculatus_M_contigs76311.1.1|Name=mRNA_H-canaliculatus_M_contigs76311.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=48bp
MEPAFQRGDILFLNNGDEPLRAGEVVVFKIKDREIPIVHRVMNVHEK*
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mRNA from alignment at H-canaliculatus_M_contigs76311:360..512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76311.1.1 ID=mRNA_H-canaliculatus_M_contigs76311.1.1|Name=mRNA_H-canaliculatus_M_contigs76311.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76311:360..512+ (Hapterophycus canaliculatus Oshoro7m male)
AGTGGTTCCATGGAGCCGGCGTTTCAGCGCGGAGACATTTTGTTCCTAAA
CAACGGCGACGAGCCTCTACGGGCGGGCGAGGTGGTGGTGTTCAAGATCA
AGGACAGGGAGATTCCTATTGTGCACAGGGTGATGAACGTCCACGAAAAG
TGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76311:360..512+

>mRNA_H-canaliculatus_M_contigs76311.1.1 ID=mRNA_H-canaliculatus_M_contigs76311.1.1|Name=mRNA_H-canaliculatus_M_contigs76311.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76311:360..512+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGAGCCGGCGTTTCAGCGCGGAGACATTTTGTTCCTAAACAACGGCGA
CGAGCCTCTACGGGCGGGCGAGGTGGTGGTGTTCAAGATCAAGGACAGGG
AGATTCCTATTGTGCACAGGGTGATGAACGTCCACGAAAAGTGA
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