mRNA_H-canaliculatus_M_contigs76299.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76299.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76299.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Clathrin (heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 2.100e-29
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    4 QYELFEEALLIYTKCGKKSEGEERTAMHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKV 186
            QYELFEEALLIYTKCGKKSEGEE+TAMHVSAAEVLVDN+KDLNRAKDFAERVADSAVWSKV
Sbjct: 1061 QYELFEEALLIYTKCGKKSEGEEKTAMHVSAAEVLVDNLKDLNRAKDFAERVADSAVWSKV 1121
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BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Clathrin (heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.680e-16
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    7 YELFEEALLIYTKCGKKSE-GEERTAMHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKV 186
            YEL+EEAL+IY K GKK+  G ERTA++VSA EVLVD+IK L+RAKDFAERV + AVWSK+
Sbjct: 1079 YELYEEALIIYIKFGKKAPAGPERTALNVSAVEVLVDHIKALDRAKDFAERVQEPAVWSKL 1139
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BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2C2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.360e-15
Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:    4 QYELFEEALLIYTKCGKKS--EGEERTAMHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKVRGRGREG 207
            QYEL EEA +IYTKC KKS    EE T+M+V A EVLV++I DL+RAK+FA+RV D AVWSKV     EG
Sbjct: 1071 QYELHEEAFVIYTKCAKKSGIPAEEVTSMNVMAVEVLVEHISDLSRAKEFADRVNDVAVWSKVGVAQLEG 1140
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BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Clathrin (heavy chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H689_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.940e-14
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   13 LFEEALLIYTKCGKKSEGEERTAMHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKV 186
            L+EEAL IY K GKK++G+E+   HV+A EVLVDNI+DL+RAK+FAERV    VWSK+
Sbjct: 1084 LYEEALTIYIKFGKKTKGDEQVGHHVAAVEVLVDNIRDLDRAKEFAERVNVKDVWSKL 1141
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BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYD4_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 2.650e-11
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:   10 ELFEEALLIYTKCGKKSEGEERTAMHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKV 186
            EL+EEA  IY K  KKS G+E+    V+A E+LVD I+DL+RAK+F+ER    AVWSK+
Sbjct:   53 ELYEEAFTIYLKFAKKSVGDEQIGHQVAAVEILVDKIRDLDRAKEFSERANSPAVWSKL 111
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BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Clathrin (heavy chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLU7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.440e-10
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:    4 QYELFEEALLIYTKCGKKSEGEERTA-MHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKV 186
            +Y+LFEEA +IY K  K ++ EE  A M+V A  VL+D + +L RAK+FAERV++  VWSK+
Sbjct: 1075 EYQLFEEAFVIYNKSAKNAQSEEEKARMYVLAVSVLLDKMSELERAKEFAERVSEKDVWSKL 1136
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BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Clathrin (heavy chain n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAY4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.340e-10
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    4 QYELFEEALLIYTKCGKKSEG-EERTAMHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKV 186
            QYEL+EEA  IY K  K ++  EER +++ +A EVLVDNI+ L+RAK FAER+ +  VWSK+
Sbjct: 1071 QYELYEEAFAIYVKFAKAAKNAEERGSLNRAACEVLVDNIRALDRAKAFAERINEPEVWSKL 1132
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Clathrin (heavy chain n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4G6A6_9ALVE)

HSP 1 Score: 56.6 bits (135), Expect = 2.350e-7
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1 
Query:    4 QYELFEEALLIYTKCGKKSEGEERTAMHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKVRGRGREGTPPVLPSLFSF 240
            QYELFEEA +IY K           ++H  A +VL++N+++L RA +FA RV +S VWS++ GR + G   V  ++ S+
Sbjct: 1090 QYELFEEAFVIYKKF----------SLHTDAVDVLLNNMENLERAAEFAARVNESGVWSRL-GRAQLGQNQVSEAIESY 1157
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0C3_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.100e-6
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   13 LFEEALLIYTKCGKK---SEGEERTAMHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKV 186
            L+EEA  IY K  K    +E EE+T M V A  VLVD +KDL+RAK FA +V   +VWSK+
Sbjct:  683 LYEEAFTIYGKFSKPEFTAEKEEQTEMQVLAVGVLVDFMKDLDRAKTFASQVDHKSVWSKL 743
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BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Match: Clathrin (heavy chain n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZJ1_AURAN)

HSP 1 Score: 54.7 bits (130), Expect = 1.120e-6
Identity = 28/62 (45.16%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    4 QYELFEEALLIYTKCGKKSEGEERTA-MHVSAAEVLVDNIKDLNRAKDFAERVADSAVWSKV 186
            QY L+EE  +IYTK  K +      A ++V+A  VLVD +++L RA +FAERV ++ VWS++
Sbjct: 1053 QYNLYEEGFVIYTKFAKAAPDAAAAAELNVAAVGVLVDLVRNLERASEFAERVNEAGVWSRL 1114
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76299.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Clathrin2.100e-2996.72heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
Clathrin3.680e-1670.49heavy chain n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Hypothetical2.360e-1562.86protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Clathrin3.940e-1463.79heavy chain n=1 Tax=Spumella elongata TaxID=89044 ... [more]
Uncharacterized2.650e-1155.93protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A48... [more]
Clathrin2.440e-1051.61heavy chain n=1 Tax=Phaeomonas parva TaxID=124430 ... [more]
Clathrin3.340e-1054.84heavy chain n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
Clathrin2.350e-740.51heavy chain n=1 Tax=Chromera velia CCMP2878 TaxID=... [more]
Hypothetical1.100e-652.46protein (Fragment) n=1 Tax=Eucampia antarctica Tax... [more]
Clathrin1.120e-645.16heavy chain n=1 Tax=Aureococcus anophagefferens Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76299contigH-canaliculatus_M_contigs76299:51..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FWD1
Preferred nameCLTC
PFAMsClathrin,Clathrin-link,Clathrin_H_link,Clathrin_propel
Model size261
Max annot lvl2759|Eukaryota
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000041,GO:0000139,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000323,GO:0000578,GO:0000910,GO:0000912,GO:0000915,GO:0001505,GO:0001654,GO:0001745,GO:0002020,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005905,GO:0005911,GO:0005938,GO:0006109,GO:0006403,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006907,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007030,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007346,GO:0007349,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007424,GO:0007568,GO:0007591,GO:0007594,GO:0008022,GO:0008092,GO:0008103,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008298,GO:0008340,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009898,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010118,GO:0010256,GO:0010259,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010623,GO:0010646,GO:0010647,GO:0010827,GO:0010828,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016055,GO:0016079,GO:0016192,GO:0016197,GO:0016324,GO:0016325,GO:0016482,GO:0017156,GO:0019094,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022608,GO:0022609,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030054,GO:0030100,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030154,GO:0030163,GO:0030198,GO:0030276,GO:0030315,GO:0030424,GO:0030435,GO:0030479,GO:0030506,GO:0030587,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030951,GO:0030952,GO:0031032,GO:0031072,GO:0031090,GO:0031152,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031523,GO:0031623,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0031984,GO:0032051,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032881,GO:0032885,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033218,GO:0033227,GO:0033267,GO:0033363,GO:0033554,GO:0033572,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0035002,GO:0035150,GO:0035151,GO:0035152,GO:0035159,GO:0035282,GO:0035567,GO:0036019,GO:0036020,GO:0040008,GO:0042044,GO:0042045,GO:0042147,GO:0042277,GO:0042303,GO:0042383,GO:0042594,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043062,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043679,GO:0043933,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044430,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045055,GO:0045056,GO:0045176,GO:0045177,GO:0045184,GO:0045202,GO:0045334,GO:0045451,GO:0045747,GO:0045807,GO:0045912,GO:0046324,GO:0046326,GO:0046666,GO:0046667,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048259,GO:0048260,GO:0048268,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048475,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051301,GO:0051493,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060071,GO:0060236,GO:0060255,GO:0060341,GO:0060541,GO:0060627,GO:0060810,GO:0060811,GO:0061024,GO:0061640,GO:0061645,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070507,GO:0070633,GO:0070727,GO:0070925,GO:0071439,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0072583,GO:0072686,GO:0080090,GO:0090066,GO:0090175,GO:0090224,GO:0090307,GO:0090596,GO:0090702,GO:0097006,GO:0097159,GO:0097443,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098852,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099120,GO:0099503,GO:0099504,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:0140014,GO:0150034,GO:0198738,GO:1900125,GO:1900126,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902850,GO:1903047,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990381,GO:1990498,GO:1990763,GO:2000026,GO:2000027,GO:2000369,GO:2000370
Exons1
Evalue3.44e-30
EggNOG OGsKOG0985@1|root,KOG0985@2759|Eukaryota
Descriptionclathrin light chain binding
Cds size261
COG categoryO
BRITEko00000,ko00001,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.2771099-CDS-H-canaliculatus_M_contigs76299:50..3111696854101.2771099-CDS-H-canaliculatus_M_contigs76299:50..311Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76299 51..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76299.1.1prot_H-canaliculatus_M_contigs76299.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76299 51..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76299.1.1

>prot_H-canaliculatus_M_contigs76299.1.1 ID=prot_H-canaliculatus_M_contigs76299.1.1|Name=mRNA_H-canaliculatus_M_contigs76299.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=87bp
KQYELFEEALLIYTKCGKKSEGEERTAMHVSAAEVLVDNIKDLNRAKDFA
ERVADSAVWSKVRGRGREGTPPVLPSLFSFCLFYLF*
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mRNA from alignment at H-canaliculatus_M_contigs76299:51..311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76299.1.1 ID=mRNA_H-canaliculatus_M_contigs76299.1.1|Name=mRNA_H-canaliculatus_M_contigs76299.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=261bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76299:51..311+ (Hapterophycus canaliculatus Oshoro7m male)
AAACAGTACGAGCTGTTCGAGGAAGCCCTGCTGATCTACACCAAGTGCGG
GAAGAAAAGCGAGGGCGAGGAGAGGACCGCCATGCACGTCAGCGCCGCGG
AGGTGCTGGTGGACAACATCAAGGACCTCAACCGCGCCAAGGACTTCGCC
GAGCGCGTCGCCGACAGCGCCGTGTGGAGCAAGGTGAGAGGGAGAGGGAG
GGAGGGAACGCCTCCTGTACTTCCGTCCTTGTTTTCTTTTTGTTTATTTT
ATTTATTTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76299:51..311+

>mRNA_H-canaliculatus_M_contigs76299.1.1 ID=mRNA_H-canaliculatus_M_contigs76299.1.1|Name=mRNA_H-canaliculatus_M_contigs76299.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=261bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76299:51..311+ (Hapterophycus canaliculatus Oshoro7m male)
AAACAGTACGAGCTGTTCGAGGAAGCCCTGCTGATCTACACCAAGTGCGG
GAAGAAAAGCGAGGGCGAGGAGAGGACCGCCATGCACGTCAGCGCCGCGG
AGGTGCTGGTGGACAACATCAAGGACCTCAACCGCGCCAAGGACTTCGCC
GAGCGCGTCGCCGACAGCGCCGTGTGGAGCAAGGTGAGAGGGAGAGGGAG
GGAGGGAACGCCTCCTGTACTTCCGTCCTTGTTTTCTTTTTGTTTATTTT
ATTTATTTTAG
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