mRNA_H-canaliculatus_M_contigs76298.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76298.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76298.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: DUF4205 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK40_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.660e-8
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLV 114
            +VGDRLK+P  PIWVVCSESHYSV+F  D S+V
Sbjct:  616 EVGDRLKNPETPIWVVCSESHYSVLFGVDSSIV 648
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: DUF4205 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIJ1_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.740e-8
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLV 114
            +VGDRLK+P  PIWVVCSESHYSV+F  D ++V
Sbjct:  597 EVGDRLKNPETPIWVVCSESHYSVLFSVDSAIV 629
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase MINDY n=2 Tax=Cyprinidae TaxID=7953 RepID=A0A7J6CU99_9TELE)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-7
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLVT 117
            +VG  LKSP  PIWVVCSESH+SV+FCP   L T
Sbjct:  570 KVGSHLKSPKFPIWVVCSESHFSVLFCPSEDLAT 603
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: probable (ubiquitin carboxyl-terminal hydrolase MINDY-4 n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C88E9C3)

HSP 1 Score: 53.9 bits (128), Expect = 2.710e-7
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLVT 117
            ++G  LKSP  PIWVVCSESH+SV+FCP   L T
Sbjct:  574 KIGSHLKSPKFPIWVVCSESHFSVLFCPSEDLAT 607
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: Nexilin-like (isoform X1 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498NSY8_LABRO)

HSP 1 Score: 53.1 bits (126), Expect = 5.050e-7
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLVT 117
            +VG  LK+P  PIWVVCSESH+SV+FCP   L T
Sbjct: 1071 KVGSHLKTPKFPIWVVCSESHFSVLFCPSEDLAT 1104
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase MINDY n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A8C1F388_CYPCA)

HSP 1 Score: 53.1 bits (126), Expect = 5.070e-7
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLVT 117
            +VG  LK+P  PIWVVCSESH+SV+FCP   L T
Sbjct:  577 KVGSHLKAPKFPIWVVCSESHFSVLFCPSEDLAT 610
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase MINDY n=8 Tax=Cyprininae TaxID=2743694 RepID=A0A672LMK2_SINGR)

HSP 1 Score: 53.1 bits (126), Expect = 5.070e-7
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLVT 117
            +VG  LK+P  PIWVVCSESH+SV+FCP   L T
Sbjct:  573 KVGSHLKTPKFPIWVVCSESHFSVLFCPSEDLAT 606
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase MINDY n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1PIY3_CYPCA)

HSP 1 Score: 53.1 bits (126), Expect = 5.070e-7
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLVT 117
            +VG  LK+P  PIWVVCSESH+SV+FCP   L T
Sbjct:  465 KVGSHLKAPKFPIWVVCSESHFSVLFCPSEDLAT 498
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase MINDY n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671R0R7_9TELE)

HSP 1 Score: 53.1 bits (126), Expect = 5.080e-7
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLVT 117
            +VG  LK+P  PIWVVCSESH+SV+FCP   L T
Sbjct:  453 KVGSHLKTPKFPIWVVCSESHFSVLFCPSEDLAT 486
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BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase MINDY n=3 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673IXC2_9TELE)

HSP 1 Score: 53.1 bits (126), Expect = 5.080e-7
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:   16 QVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLVT 117
            +VG  LK+P  PIWVVCSESH+SV+FCP   L T
Sbjct:  415 KVGSHLKTPKFPIWVVCSESHFSVLFCPSEDLAT 448
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76298.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DUF42055.660e-872.73domain-containing protein n=1 Tax=Ectocarpus silic... [more]
DUF42057.740e-869.70domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Ubiquitin1.980e-767.65carboxyl-terminal hydrolase MINDY n=2 Tax=Cyprinid... [more]
probable2.710e-764.71ubiquitin carboxyl-terminal hydrolase MINDY-4 n=1 ... [more]
Nexilin-like5.050e-764.71isoform X1 n=1 Tax=Labeo rohita TaxID=84645 RepID=... [more]
Ubiquitin5.070e-764.71carboxyl-terminal hydrolase MINDY n=7 Tax=Cyprinin... [more]
Ubiquitin5.070e-764.71carboxyl-terminal hydrolase MINDY n=8 Tax=Cyprinin... [more]
Ubiquitin5.070e-764.71carboxyl-terminal hydrolase MINDY n=1 Tax=Cyprinus... [more]
Ubiquitin5.080e-764.71carboxyl-terminal hydrolase MINDY n=1 Tax=Sinocycl... [more]
Ubiquitin5.080e-764.71carboxyl-terminal hydrolase MINDY n=3 Tax=Sinocycl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76298contigH-canaliculatus_M_contigs76298:371..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LK40
PFAMsDUF4205,Myb_DNA-binding,Pkinase_Tyr
Model size117
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.27e-09
EggNOG OGsKOG2871@1|root,KOG2871@2759|Eukaryota
Descriptionubiquitinyl hydrolase activity
Cds size117
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.2419174-CDS-H-canaliculatus_M_contigs76298:370..4871696854101.2419174-CDS-H-canaliculatus_M_contigs76298:370..487Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76298 371..487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76298.1.1prot_H-canaliculatus_M_contigs76298.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76298 371..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76298.1.1

>prot_H-canaliculatus_M_contigs76298.1.1 ID=prot_H-canaliculatus_M_contigs76298.1.1|Name=mRNA_H-canaliculatus_M_contigs76298.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=39bp
FSCTSQVGDRLKSPVNPIWVVCSESHYSVVFCPDGSLVT
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mRNA from alignment at H-canaliculatus_M_contigs76298:371..487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76298.1.1 ID=mRNA_H-canaliculatus_M_contigs76298.1.1|Name=mRNA_H-canaliculatus_M_contigs76298.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76298:371..487+ (Hapterophycus canaliculatus Oshoro7m male)
TTTTCCTGTACCTCTCAGGTGGGAGATCGTCTCAAGAGCCCCGTGAACCC
GATCTGGGTCGTGTGCAGCGAGAGCCACTACTCCGTCGTCTTCTGTCCAG
ATGGCTCCCTCGTGACA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76298:371..487+

>mRNA_H-canaliculatus_M_contigs76298.1.1 ID=mRNA_H-canaliculatus_M_contigs76298.1.1|Name=mRNA_H-canaliculatus_M_contigs76298.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76298:371..487+ (Hapterophycus canaliculatus Oshoro7m male)
TTTTCCTGTACCTCTCAGGTGGGAGATCGTCTCAAGAGCCCCGTGAACCC
GATCTGGGTCGTGTGCAGCGAGAGCCACTACTCCGTCGTCTTCTGTCCAG
ATGGCTCCCTCGTGACA
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