mRNA_H-canaliculatus_M_contigs76297.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76297.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76297.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76297.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.080e-9
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    1 MVVGDGNKLRVECFGDLDLVLHCEGHGARWRDVPVMLKGAAVVPGLCFDIISFNQI 168
            + +GDG KL+ ECFG LD+V HC        DV V +K  AVVP L FD++S N I
Sbjct:   46 LFIGDGRKLKAECFGSLDVVFHCR------EDVLVTMKDIAVVPDLAFDLVSLNVI 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76297.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Integrase2.080e-950.00catalytic domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76297contigH-canaliculatus_M_contigs76297:79..246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.2003465-CDS-H-canaliculatus_M_contigs76297:78..2461696854101.2003465-CDS-H-canaliculatus_M_contigs76297:78..246Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76297 79..246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76297.1.1prot_H-canaliculatus_M_contigs76297.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76297 79..246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76297.1.1

>prot_H-canaliculatus_M_contigs76297.1.1 ID=prot_H-canaliculatus_M_contigs76297.1.1|Name=mRNA_H-canaliculatus_M_contigs76297.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=56bp
MVVGDGNKLRVECFGDLDLVLHCEGHGARWRDVPVMLKGAAVVPGLCFDI
ISFNQI
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mRNA from alignment at H-canaliculatus_M_contigs76297:79..246+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76297.1.1 ID=mRNA_H-canaliculatus_M_contigs76297.1.1|Name=mRNA_H-canaliculatus_M_contigs76297.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=168bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76297:79..246+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGTGGTCGGGGACGGCAACAAGCTGCGGGTTGAGTGTTTTGGCGACCT
TGACCTTGTCCTGCACTGCGAAGGGCATGGCGCACGTTGGCGAGACGTGC
CGGTGATGTTGAAGGGCGCCGCGGTTGTACCTGGTTTGTGCTTCGACATA
ATCTCCTTTAACCAGATC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76297:79..246+

>mRNA_H-canaliculatus_M_contigs76297.1.1 ID=mRNA_H-canaliculatus_M_contigs76297.1.1|Name=mRNA_H-canaliculatus_M_contigs76297.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=168bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76297:79..246+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGTGGTCGGGGACGGCAACAAGCTGCGGGTTGAGTGTTTTGGCGACCT
TGACCTTGTCCTGCACTGCGAAGGGCATGGCGCACGTTGGCGAGACGTGC
CGGTGATGTTGAAGGGCGCCGCGGTTGTACCTGGTTTGTGCTTCGACATA
ATCTCCTTTAACCAGATC
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