mRNA_H-canaliculatus_M_contigs76291.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76291.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76291.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76291.1.1 vs.
Match: E2 (ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPB6_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 1.150e-21
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   46 KVRDPGGNEDVVRRVCDMGFPEAQARRALASNDWDEMAAINALLSGS 186
            +VRDPGGNEDVVRRVCDMGFPEAQARRALASNDWDE AAIN LLSGS
Sbjct:  311 QVRDPGGNEDVVRRVCDMGFPEAQARRALASNDWDETAAINTLLSGS 357
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BLAST of mRNA_H-canaliculatus_M_contigs76291.1.1 vs.
Match: E2 (ubiquitin-conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD13_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 9.660e-9
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    4 YLCFRVVASFF---FSIKVRDPGGNEDVVRRVCDMGFPEAQARRALASNDWDEMAAINALLS 180
            Y  F   A F+   ++++    G +E+ + RVC+MGF  A+ARRAL +++WDE+AAIN+LLS
Sbjct:  134 YQTFVQTAKFWTETYAMEHMGGGDHENAIARVCEMGFAAAEARRALEAHNWDEVAAINSLLS 195
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BLAST of mRNA_H-canaliculatus_M_contigs76291.1.1 vs.
Match: E2 (ubiquitin-conjugating enzyme n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J672_FISSO)

HSP 1 Score: 53.9 bits (128), Expect = 3.750e-7
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   34 FFSIKVRDPGGNEDVVRRVCDMGFPEAQARRALASNDWDEMAAINALL 177
            F++     P   ++ V+RVC+MGF EA AR+AL  + WDE AA+N LL
Sbjct:  144 FWTESFAKPTSKDEAVQRVCEMGFDEASARKALEKHKWDESAAVNELL 191
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BLAST of mRNA_H-canaliculatus_M_contigs76291.1.1 vs.
Match: E2 (ubiquitin-conjugating enzyme n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MD08_9APIC)

HSP 1 Score: 53.1 bits (126), Expect = 9.100e-7
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   70 EDVVRRVCDMGFPEAQARRALASNDWDEMAAINALLSG 183
            ED VR++ +MGFPE QAR AL  +DWDE  A+N+L+ G
Sbjct:  180 EDKVRKLTEMGFPEEQAREALRKHDWDETLALNSLVEG 217
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BLAST of mRNA_H-canaliculatus_M_contigs76291.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZJ3_THAOC)

HSP 1 Score: 49.7 bits (117), Expect = 4.120e-6
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:   70 EDVVRRVCDMGFPEAQARRALASNDWDEMAAINALL 177
            +D + RVC+MGF +  ARRAL  + WDE AA+N LL
Sbjct:   71 DDAIGRVCEMGFDQLSARRALEKHKWDEQAAVNELL 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76291.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
E21.150e-2193.62ubiquitin-conjugating enzyme n=1 Tax=Ectocarpus si... [more]
E29.660e-945.16ubiquitin-conjugating enzyme n=1 Tax=Tribonema min... [more]
E23.750e-747.92ubiquitin-conjugating enzyme n=1 Tax=Fistulifera s... [more]
E29.100e-757.89ubiquitin-conjugating enzyme n=1 Tax=Besnoitia bes... [more]
Uncharacterized4.120e-655.56protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76291contigH-canaliculatus_M_contigs76291:3..191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FPB6
Preferred nameUBE2K
PFAMsUBA,UBA_3,UQ_con
Model size189
Max annot lvl2759|Eukaryota
KEGG koko:K04649,ko:K06634,ko:K18164
KEGG Pathwayko03022,ko03420,ko04110,ko04120,ko04714,map03022,map03420,map04110,map04120,map04714
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0000502,GO:0001932,GO:0001934,GO:0001959,GO:0001961,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006915,GO:0006950,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010799,GO:0010800,GO:0010992,GO:0010994,GO:0012501,GO:0016043,GO:0016050,GO:0016567,GO:0016740,GO:0019220,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030162,GO:0030163,GO:0030175,GO:0030433,GO:0031323,GO:0031325,GO:0031329,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031625,GO:0032268,GO:0032270,GO:0032433,GO:0032434,GO:0032446,GO:0032991,GO:0033554,GO:0034097,GO:0034450,GO:0034622,GO:0034976,GO:0035456,GO:0035458,GO:0035556,GO:0036211,GO:0036503,GO:0042176,GO:0042221,GO:0042325,GO:0042327,GO:0042592,GO:0042995,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0045088,GO:0045089,GO:0045937,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051258,GO:0051603,GO:0051716,GO:0060255,GO:0060338,GO:0060340,GO:0060759,GO:0060760,GO:0061136,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0070059,GO:0070628,GO:0070647,GO:0070887,GO:0070936,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0097190,GO:0097193,GO:0098858,GO:0120025,GO:0120038,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902494,GO:1903050,GO:1903362,GO:1905368,GO:1905369,GO:2000058
Exons1
Evalue1.89e-22
EggNOG OGsCOG5078@1|root,KOG0418@2759|Eukaryota
Ec32 ortholog descriptionubiquitin-conjugating enzyme 1
Ec32 orthologEc-15_004000.1
EC2.3.2.23
Descriptionprotein polyubiquitination
Cds size189
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03029,ko03400,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.166115-CDS-H-canaliculatus_M_contigs76291:2..1911696854101.166115-CDS-H-canaliculatus_M_contigs76291:2..191Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76291 3..191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76291.1.1prot_H-canaliculatus_M_contigs76291.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76291 3..191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76291.1.1

>prot_H-canaliculatus_M_contigs76291.1.1 ID=prot_H-canaliculatus_M_contigs76291.1.1|Name=mRNA_H-canaliculatus_M_contigs76291.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=63bp
EYLCFRVVASFFFSIKVRDPGGNEDVVRRVCDMGFPEAQARRALASNDWD
EMAAINALLSGS*
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mRNA from alignment at H-canaliculatus_M_contigs76291:3..191+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76291.1.1 ID=mRNA_H-canaliculatus_M_contigs76291.1.1|Name=mRNA_H-canaliculatus_M_contigs76291.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=189bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76291:3..191+ (Hapterophycus canaliculatus Oshoro7m male)
GAGTATCTTTGTTTTCGCGTTGTGGCCTCTTTTTTTTTCTCCATTAAGGT
GCGCGATCCCGGAGGCAACGAGGACGTGGTACGAAGGGTGTGCGATATGG
GTTTCCCAGAGGCGCAGGCTCGGAGGGCGCTGGCGTCCAACGACTGGGAC
GAGATGGCAGCGATCAACGCCCTTCTCAGCGGCAGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76291:3..191+

>mRNA_H-canaliculatus_M_contigs76291.1.1 ID=mRNA_H-canaliculatus_M_contigs76291.1.1|Name=mRNA_H-canaliculatus_M_contigs76291.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=189bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76291:3..191+ (Hapterophycus canaliculatus Oshoro7m male)
GAGTATCTTTGTTTTCGCGTTGTGGCCTCTTTTTTTTTCTCCATTAAGGT
GCGCGATCCCGGAGGCAACGAGGACGTGGTACGAAGGGTGTGCGATATGG
GTTTCCCAGAGGCGCAGGCTCGGAGGGCGCTGGCGTCCAACGACTGGGAC
GAGATGGCAGCGATCAACGCCCTTCTCAGCGGCAGCTAG
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