mRNA_H-canaliculatus_M_contigs76280.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76280.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76280.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: SufB (n=8 Tax=Rhodobacterales TaxID=204455 RepID=A8LL09_DINSH)

HSP 1 Score: 328 bits (842), Expect = 7.040e-109
Identity = 163/175 (93.14%), Postives = 171/175 (97.71%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLLETYKKLGIPLKEQALLAGVEAPE +RRVAVDAVFDSVSVGTTFQAEL KAGVIFCSISEAIKEHPELVKKYLG+VVPVSDNYYATLNSAVFSDGSFVY+PPG +CPMELSTYFRINAENTGQFERTLIIADK SYVSYLEGCTAPQRD+AQLHAAVVE+VLL+DAE+KYS
Sbjct:  115 DPKLLETYKKLGIPLKEQALLAGVEAPEEDRRVAVDAVFDSVSVGTTFQAELKKAGVIFCSISEAIKEHPELVKKYLGSVVPVSDNYYATLNSAVFSDGSFVYVPPGVKCPMELSTYFRINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDIAQLHAAVVEIVLLEDAEVKYS 289
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: FeS (assembly protein SufB n=1 Tax=Rhodobacteraceae bacterium HTCC2150 TaxID=388401 RepID=A3JSW5_9RHOB)

HSP 1 Score: 323 bits (829), Expect = 6.460e-107
Identity = 158/175 (90.29%), Postives = 170/175 (97.14%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLLETYKKLGIPLKEQALLAGVEAPE ER+VAVDAVFDSVSVGTTF+ EL KAGVIFCSISEAIKEHPELV+KYLGTVVPVSDNYYATLNSAVFSDGSFVY+PPG RCPMELSTYFRINAENTGQFERTLII DK++YVSYLEGCTAPQRD+AQLHAAVVE+V+++DAE+KYS
Sbjct:  115 DPKLLETYKKLGIPLKEQALLAGVEAPEEERKVAVDAVFDSVSVGTTFKDELAKAGVIFCSISEAIKEHPELVRKYLGTVVPVSDNYYATLNSAVFSDGSFVYVPPGVRCPMELSTYFRINAENTGQFERTLIICDKEAYVSYLEGCTAPQRDIAQLHAAVVEIVIMEDAEVKYS 289
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: FeS (cluster assembly protein SufB n=13 Tax=Rhodobacterales TaxID=204455 RepID=A0A0U1NIL6_9RHOB)

HSP 1 Score: 317 bits (811), Expect = 3.180e-104
Identity = 157/175 (89.71%), Postives = 167/175 (95.43%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLL TY+KLGIPLKEQALLAGVEAPE ER+VAVDAVFDSVSVGTTF+ EL KAGVIFCSISEAI+EHPELVKKYLG+VVPVSDNYYATLNSAVFSDGSFVY+PPG RCPMELSTYFRINAENTGQFERTLIIADK SYVSYLEGCTAPQRD AQLHAAVVE+V+ +DAE+KYS
Sbjct:  113 DPKLLATYEKLGIPLKEQALLAGVEAPEEERKVAVDAVFDSVSVGTTFKDELAKAGVIFCSISEAIREHPELVKKYLGSVVPVSDNYYATLNSAVFSDGSFVYVPPGVRCPMELSTYFRINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDTAQLHAAVVEIVIEEDAEVKYS 287
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: Fe-S (cluster assembly protein SufB n=1 Tax=Falsihalocynthiibacter arcticus TaxID=1579316 RepID=A0A126V3L2_9RHOB)

HSP 1 Score: 315 bits (807), Expect = 1.280e-103
Identity = 154/175 (88.00%), Postives = 169/175 (96.57%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLLETYKKLGIPLKEQALLAGVEAPEGER+VAVDAVFDSVS+GTTFQ +L K GVIFCSISEAIK++P+LVKKYLG+VVPVSDN+YATLNSAVFSDGSFVY+PPG RCPMELSTYFRINAENTGQFERTLIIADK SYVSYLEGCTAP+RDVAQLHAAVVE+++ +DAE+KYS
Sbjct:  113 DPKLLETYKKLGIPLKEQALLAGVEAPEGERKVAVDAVFDSVSLGTTFQKDLEKVGVIFCSISEAIKKYPDLVKKYLGSVVPVSDNFYATLNSAVFSDGSFVYVPPGVRCPMELSTYFRINAENTGQFERTLIIADKGSYVSYLEGCTAPKRDVAQLHAAVVEIIIEEDAEVKYS 287
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: Fe-S (cluster assembly protein SufB (Fragment) n=1 Tax=Fuscovulum blasticum DSM 2131 TaxID=1188250 RepID=A0A2T4J784_FUSBL)

HSP 1 Score: 310 bits (795), Expect = 1.530e-103
Identity = 153/175 (87.43%), Postives = 165/175 (94.29%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLL TY+KLGIPLKEQALLAGVE PEGER+VAVDAVFDSVSVGTTF+ EL KAGVIFCSISEA++EHPELV+KYLGTVVP SDN++ATLN AVFSDGSFVYIPPG RCPMELSTYFRINAENTGQFERTLIIADK SYVSYLEGCTAP+RD  QLHAAVVE+VLL+DAE+KYS
Sbjct:  115 DPKLLATYEKLGIPLKEQALLAGVEMPEGERQVAVDAVFDSVSVGTTFKEELRKAGVIFCSISEAVREHPELVQKYLGTVVPPSDNFFATLNCAVFSDGSFVYIPPGVRCPMELSTYFRINAENTGQFERTLIIADKGSYVSYLEGCTAPKRDTTQLHAAVVEIVLLEDAEVKYS 289
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: Iron-sulfur (cluster assembly protein SufB n=3 Tax=Rubellimicrobium TaxID=295418 RepID=A0A017HSC6_9RHOB)

HSP 1 Score: 315 bits (807), Expect = 2.330e-103
Identity = 155/175 (88.57%), Postives = 167/175 (95.43%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLL+TYKKLGIPLKEQ +LAGVE PEGERRVAVDAVFDSVSVGTTF+AEL KAGVIFCSISEAI+EHPELV+KYLG+VVP SDN+YATLNSAVFSDGSFVYIPPG RCPMELSTYFRINAENTGQFERTLIIADK SYVSYLEGCTAP+RDVAQLHAAVVE++  +DAE+KYS
Sbjct:  134 DPKLLDTYKKLGIPLKEQEILAGVERPEGERRVAVDAVFDSVSVGTTFKAELAKAGVIFCSISEAIREHPELVRKYLGSVVPPSDNFYATLNSAVFSDGSFVYIPPGVRCPMELSTYFRINAENTGQFERTLIIADKGSYVSYLEGCTAPKRDVAQLHAAVVEIIAEEDAEVKYS 308
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: FeS (cluster assembly protein SufB n=1 Tax=Cognatishimia activa TaxID=1715691 RepID=A0A0P1IUJ0_9RHOB)

HSP 1 Score: 314 bits (804), Expect = 3.830e-103
Identity = 155/175 (88.57%), Postives = 166/175 (94.86%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLL TY+KLGIPLKEQA+LAGVE PE ER+VAVDAVFDSVSVGTTFQ EL KAGVIFCSISEAIKEHPELVKKYLG+VVPV+DN+YATLNSAVFSDGSFVYIPPG RCPMELSTYFRINAENTGQFERTLIIADK SYVSYLEGCTAPQRD AQLHAAVVE+++ +DAE+KYS
Sbjct:  115 DPKLLATYEKLGIPLKEQAILAGVEMPEEERKVAVDAVFDSVSVGTTFQEELKKAGVIFCSISEAIKEHPELVKKYLGSVVPVTDNFYATLNSAVFSDGSFVYIPPGVRCPMELSTYFRINAENTGQFERTLIIADKGSYVSYLEGCTAPQRDTAQLHAAVVEIIIEEDAEVKYS 289
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: Fe-S (cluster assembly protein SufB n=2 Tax=Pseudopuniceibacterium antarcticum TaxID=2613965 RepID=A0A7L9WUB0_9RHOB)

HSP 1 Score: 311 bits (798), Expect = 3.770e-102
Identity = 156/180 (86.67%), Postives = 167/180 (92.78%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEG-----ERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLLETYKKLGIPLKEQ +LAGVE PEG     ERRVAVDAVFDSVSVGTTFQ EL  AGVIFCSISEAI++HPELV+KYLG+VVPVSDN+YATLNSAVFSDGSFVY+PPG RCPMELSTYFRINAENTGQFERTLII DK +YVSYLEGCTAPQRDVAQLHAAVVE+VLL+DAE+KYS
Sbjct:  117 DPKLLETYKKLGIPLKEQMILAGVEVPEGDEPVEERRVAVDAVFDSVSVGTTFQKELKAAGVIFCSISEAIRDHPELVQKYLGSVVPVSDNFYATLNSAVFSDGSFVYVPPGVRCPMELSTYFRINAENTGQFERTLIICDKGAYVSYLEGCTAPQRDVAQLHAAVVEIVLLEDAEVKYS 296
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: Fe-S (cluster assembly protein SufB n=2 Tax=Bacteria TaxID=2 RepID=A0A2E8IU57_9BACT)

HSP 1 Score: 311 bits (796), Expect = 5.660e-102
Identity = 155/175 (88.57%), Postives = 167/175 (95.43%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLLETYKKLGIPLKEQALLAGV   + ER+VAVDAVFDSVSVGTTFQAEL KAGVIFCS+SEAIKE+PEL++KYLGTVVPV+DNYYATLNSAVFSDGSF+YIP G RCPMELSTYFRINAENTGQFERTLIIADK SYVSYLEGCTAP+RD+AQLHAAVVELVLL+D+EIKYS
Sbjct:  112 DPKLLETYKKLGIPLKEQALLAGVVGGDKERKVAVDAVFDSVSVGTTFQAELKKAGVIFCSMSEAIKEYPELIQKYLGTVVPVTDNYYATLNSAVFSDGSFIYIPEGIRCPMELSTYFRINAENTGQFERTLIIADKGSYVSYLEGCTAPKRDIAQLHAAVVELVLLEDSEIKYS 286
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BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Match: SufB (protein n=13 Tax=Jannaschia TaxID=188905 RepID=A0A0D1EJZ9_9RHOB)

HSP 1 Score: 310 bits (795), Expect = 8.480e-102
Identity = 155/175 (88.57%), Postives = 165/175 (94.29%), Query Frame = 1 
Query:    1 DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQAELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGSFVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAPQRDVAQLHAAVVELVLLDDAEIKYS 525
            DPKLLETY+KLGIPLKEQA+LAGVE    +R+VAVDAVFDSVSVGTTF+AEL KAGVIFCSISEAIKEHPELVKKYLG+VVP SDNYYATLNSAVFSDGSFVYIP G RCPMELSTYFRINAENTGQFERTLIIAD+ SYVSYLEGCTAPQRD AQLHAAVVE+V+LDDAE+KYS
Sbjct:  114 DPKLLETYQKLGIPLKEQAILAGVEPAPEDRKVAVDAVFDSVSVGTTFKAELAKAGVIFCSISEAIKEHPELVKKYLGSVVPQSDNYYATLNSAVFSDGSFVYIPKGVRCPMELSTYFRINAENTGQFERTLIIADEGSYVSYLEGCTAPQRDTAQLHAAVVEIVVLDDAEVKYS 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76280.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
SufB7.040e-10993.14n=8 Tax=Rhodobacterales TaxID=204455 RepID=A8LL09_... [more]
FeS6.460e-10790.29assembly protein SufB n=1 Tax=Rhodobacteraceae bac... [more]
FeS3.180e-10489.71cluster assembly protein SufB n=13 Tax=Rhodobacter... [more]
Fe-S1.280e-10388.00cluster assembly protein SufB n=1 Tax=Falsihalocyn... [more]
Fe-S1.530e-10387.43cluster assembly protein SufB (Fragment) n=1 Tax=F... [more]
Iron-sulfur2.330e-10388.57cluster assembly protein SufB n=3 Tax=Rubellimicro... [more]
FeS3.830e-10388.57cluster assembly protein SufB n=1 Tax=Cognatishimi... [more]
Fe-S3.770e-10286.67cluster assembly protein SufB n=2 Tax=Pseudopunice... [more]
Fe-S5.660e-10288.57cluster assembly protein SufB n=2 Tax=Bacteria Tax... [more]
SufB8.480e-10288.57protein n=13 Tax=Jannaschia TaxID=188905 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76280contigH-canaliculatus_M_contigs76280:3..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog666509.RCA23_c16290
Preferred namesufB
PFAMsUPF0051
Model size525
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09014
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0009842,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons1
Evalue4.42e-112
EggNOG OGsCOG0719@1|root,COG0719@2|Bacteria,1MVKY@1224|Proteobacteria,2TRU6@28211|Alphaproteobacteria
DescriptionABC-type transport system involved in Fe-S cluster assembly, permease component
Cds size525
COG categoryO
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854101.0916533-CDS-H-canaliculatus_M_contigs76280:2..5271696854101.0916533-CDS-H-canaliculatus_M_contigs76280:2..527Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76280 3..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76280.1.1prot_H-canaliculatus_M_contigs76280.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76280 3..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76280.1.1

>prot_H-canaliculatus_M_contigs76280.1.1 ID=prot_H-canaliculatus_M_contigs76280.1.1|Name=mRNA_H-canaliculatus_M_contigs76280.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=175bp
DPKLLETYKKLGIPLKEQALLAGVEAPEGERRVAVDAVFDSVSVGTTFQA
ELLKAGVIFCSISEAIKEHPELVKKYLGTVVPVSDNYYATLNSAVFSDGS
FVYIPPGTRCPMELSTYFRINAENTGQFERTLIIADKDSYVSYLEGCTAP
QRDVAQLHAAVVELVLLDDAEIKYS
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mRNA from alignment at H-canaliculatus_M_contigs76280:3..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76280.1.1 ID=mRNA_H-canaliculatus_M_contigs76280.1.1|Name=mRNA_H-canaliculatus_M_contigs76280.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=525bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76280:3..527- (Hapterophycus canaliculatus Oshoro7m male)
GATCCCAAGCTTTTGGAAACATACAAGAAACTTGGTATTCCGCTAAAGGA
ACAAGCCTTGTTGGCTGGCGTCGAAGCCCCAGAAGGCGAACGCCGTGTTG
CTGTAGATGCTGTGTTTGATAGCGTGTCTGTCGGCACCACATTCCAAGCG
GAATTGCTAAAAGCCGGCGTGATCTTCTGCTCGATCTCAGAGGCGATCAA
AGAGCACCCAGAGTTGGTGAAAAAGTATCTCGGCACGGTTGTTCCGGTGT
CCGACAACTACTACGCGACGCTGAATTCCGCTGTGTTTTCAGATGGCTCG
TTTGTTTACATCCCGCCGGGCACGCGCTGCCCGATGGAACTGTCGACGTA
TTTCCGCATCAACGCGGAAAACACCGGCCAGTTCGAACGCACACTGATCA
TCGCTGACAAAGATTCCTACGTGTCCTACCTTGAGGGCTGCACCGCACCG
CAACGCGACGTTGCACAATTGCACGCCGCCGTGGTCGAACTGGTTTTGCT
GGACGATGCCGAGATCAAATACTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76280:3..527-

>mRNA_H-canaliculatus_M_contigs76280.1.1 ID=mRNA_H-canaliculatus_M_contigs76280.1.1|Name=mRNA_H-canaliculatus_M_contigs76280.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=525bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76280:3..527- (Hapterophycus canaliculatus Oshoro7m male)
GATCCCAAGCTTTTGGAAACATACAAGAAACTTGGTATTCCGCTAAAGGA
ACAAGCCTTGTTGGCTGGCGTCGAAGCCCCAGAAGGCGAACGCCGTGTTG
CTGTAGATGCTGTGTTTGATAGCGTGTCTGTCGGCACCACATTCCAAGCG
GAATTGCTAAAAGCCGGCGTGATCTTCTGCTCGATCTCAGAGGCGATCAA
AGAGCACCCAGAGTTGGTGAAAAAGTATCTCGGCACGGTTGTTCCGGTGT
CCGACAACTACTACGCGACGCTGAATTCCGCTGTGTTTTCAGATGGCTCG
TTTGTTTACATCCCGCCGGGCACGCGCTGCCCGATGGAACTGTCGACGTA
TTTCCGCATCAACGCGGAAAACACCGGCCAGTTCGAACGCACACTGATCA
TCGCTGACAAAGATTCCTACGTGTCCTACCTTGAGGGCTGCACCGCACCG
CAACGCGACGTTGCACAATTGCACGCCGCCGTGGTCGAACTGGTTTTGCT
GGACGATGCCGAGATCAAATACTCG
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