mRNA_H-canaliculatus_M_contigs7626.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: MutS (protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI) HSP 1 Score: 479 bits (1233), Expect = 2.500e-150 Identity = 365/599 (60.93%), Postives = 392/599 (65.44%), Query Frame = 1
Query: 112 WQCLKCTFNNPAFERACNMCGQLHV-GGIGAREEIEISSSGSEIDTANKMGGGSDSNDSDSDFEESSIVRGHKRTMEEVLDRDREPPASGKQ------------KQRPGRVIPGMSRRP-SKSDGSGSLHGVRESTPLDGAKKIRGMDGGSGGEDDCRGGDDVSGGGAGRGKSSSFAVFGRRAIPTGGASVAAD---FGADSFDLSENEKRRSTFQAGLEAALRED--DRPSLAVAEEG------DNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAARVKLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEALLPATVSNGGGASAGGSNAICGAGGAGKSVGQGSFRKIGGTWRRVGGWGGKXXXXXXXXXXXXXXXXXXXHEQAGEPA--TEASMDAPLPKVDHERSEQWLMCLYEEDASPGTASEGEPLSISIALNDGSGDLPEKEVERVRVGLIAVDVRTGKVVHDTFEEGSGQRQELHTRLTHLR 1827
WQC KCTFNNPA +RAC MCG V GG AREEIEIS S SE D +K GG D +D SDFE+ I R KR + P S PG S+ P + D SL + LDGA + GG G RGGD F ADSF+L E+ +RR FQAGL AAL +D D PS+A DNG X XXXXXXXXXXXXXXXXXXXXXXXXXXX RVKLTPMEQQVVDLK KHPGVLLLVECGYRYRFFG+DALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYK VGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEAL+P+ S+G GG + AGKS GQGSFRKIGG WRRVGGWG K XXXXXXXXX +Q GEP +EA MDAPLP++DHERSEQWLM +YEEDASPG ++EGEPLSISIALNDG G EK+VERVRVGLIAVDVRTGKVVHD FEEGSGQRQELHTRL HLR
Sbjct: 80 WQCPKCTFNNPAAKRACEMCGGHQVVGGTAAREEIEISGSDSEADANSKSGGIGDDDDG-SDFEDLPIGRNPKRPRTGAGAQGSNKPTSSSSLXXXXXXXXXXXXXXXXXXXPGQSKPPPAGGDTCVSLRKEGGAAALDGAMEEIQEIGGERGR--ARGGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSADSFNLEEDARRRKDFQAGLRAALPDDSDDGPSVAXXXXXXXXXXXDNGAPGGXLXXXXXXXXXXXXXXXXXXXXXXXXXXX-------RVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYK--------VGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEALMPS--SSGSNTGTGGRSGTD----AGKSGGQGSFRKIGGAWRRVGGWGKKGGKXXXXXXXXXEDS-----DQPGEPQPPSEADMDAPLPQLDHERSEQWLMSMYEEDASPGASTEGEPLSISIALNDGGGGGAEKQVERVRVGLIAVDVRTGKVVHDAFEEGSGQRQELHTRLRHLR 649
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: RanBP2-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K477_9PHAE) HSP 1 Score: 182 bits (462), Expect = 1.490e-47 Identity = 194/415 (46.75%), Postives = 213/415 (51.33%), Query Frame = 1
Query: 112 WQCLKCTFNNPAFERACNMCGQLHV-GGIGAREEIEISSSGSEIDTANKMGGGSDSNDSDSDFEESSIVRGHKRTMEEVLDRDREPPAS----GKQKQRPG---RVIPGMSRRPSKSD----GSGSLHGVRE---STPLDGAKKIRGMDGGSGGEDDCRGGDDVSGGGAGRGKSSSFAVFGRRAIPTGGASVAADF----GADSFDLSENEKRRSTFQAGLEAALRED--DRPSLAVA------EEGDNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAARVKLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1275
WQC KCTFNNPA + AC MCG V GG AREEIEI S SE D AN GGG +D DFE+ I R KR + P S G K+RP RV P ++ P + G + VRE + LDG+ + GG G RGG A+SF L E+ +RR FQAGL AAL +D D PS+A GDNG XXXXXXXXXXXXXXXXXXXXXXXXX RVKLTPMEQQVVDLK KHPGVLLLVECGYRYRFFG+DALAAAKV GVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQA+
Sbjct: 80 WQCPKCTFNNPAAQLACKMCGGHQVVGGTAAREEIEIFGSDSEAD-ANSEGGGIGEDDDGWDFEDLPIGRNPKRPKTRAGAQGSNKPTSSSSLGNNKERPAGRNRVRPLANKPPGQPKPPPAGGDTCVSVREGGSAATLDGSMEEVEEIGGERGR--ARGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAESFTLEEDSRRRKDFQAGLRAALPDDSDDGPSVAAXXXXXXXSTGDNGAPGGGLGTXXXXXXXXXXXXXXXXXXXXXXXXX-------RVKLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKV-------------------------------------------GVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAS 441
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: MutS_I (domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7L2_9STRA) HSP 1 Score: 155 bits (391), Expect = 6.810e-39 Identity = 81/126 (64.29%), Postives = 99/126 (78.57%), Query Frame = 1
Query: 907 KLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVE 1284
+LTP+EQQVV LK HP LLLVECGYR RFFGEDAL A++VL IY ++DH F VAS+PT R+ VHL+RLV+AG+K VGVVRQ E+AALKAAGL+ +G KSGTF+RELA VF++ T+ E
Sbjct: 164 RLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFK--------VGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 281
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: Dna (mismatch repair protein msh3 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSS8_9STRA) HSP 1 Score: 155 bits (391), Expect = 5.940e-38 Identity = 81/126 (64.29%), Postives = 99/126 (78.57%), Query Frame = 1
Query: 907 KLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVE 1284
+LTP+EQQVV LK HP LLLVECGYR RFFGEDAL A++VL IY ++DH F VAS+PT R+ VHL+RLV+AG+K VGVVRQ E+AALKAAGL+ +G KSGTF+RELA VF++ T+ E
Sbjct: 272 RLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFK--------VGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 389
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: DNA (mismatch repair n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CUR2_PARAD) HSP 1 Score: 145 bits (366), Expect = 1.240e-34 Identity = 78/124 (62.90%), Postives = 96/124 (77.42%), Query Frame = 1
Query: 904 VKLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1275
+K TP+EQQVVDLK+KHP VLL+VE GY+YRFFGEDA AA+VL IYAHMDHNF ASVPTFRL+VH+RRLV AG+K VGVV+Q E+AA+KA GL + G F R L+A++++AT
Sbjct: 124 IKYTPLEQQVVDLKKKHPDVLLMVEVGYKYRFFGEDAETAARVLGIYAHMDHNFLTASVPTFRLSVHVRRLVSAGFK--------VGVVKQTETAAMKAHGLN----RLGPFCRGLSALYTKAT 235
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: Putative (ovule protein (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HD09_SOLCH) HSP 1 Score: 140 bits (352), Expect = 5.010e-34 Identity = 76/126 (60.32%), Postives = 93/126 (73.81%), Query Frame = 1
Query: 898 ARVKLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1275
A K TP+EQQVV+LK K+P VLL++E GYRYRFFG+DA AA+VL IYAHMDHNF ASVPTFRL +H+RRLV AGYK VGVV+Q E+AA+KA G K G F R L+A++++AT
Sbjct: 118 ANPKYTPLEQQVVELKTKYPDVLLMIEVGYRYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNIHVRRLVSAGYK--------VGVVKQTETAAIKAHG----SNKLGPFSRGLSALYTKAT 231
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: MutS_I (domain-containing protein (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BU35_DAVIN) HSP 1 Score: 139 bits (350), Expect = 3.480e-33 Identity = 76/123 (61.79%), Postives = 92/123 (74.80%), Query Frame = 1
Query: 907 KLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1275
K TP+EQQVVDLK K+P VLL+VE GYRYRFFGEDA AA+VL IYAHMDHNF AS+PTFRL VH+RRLV+AGYK VGVV+Q E+ A+KA G + G F R L+A++++AT
Sbjct: 167 KFTPLEQQVVDLKAKYPDVLLMVEVGYRYRFFGEDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVNAGYK--------VGVVKQTETTAIKAHG----SNRLGPFCRGLSALYTKAT 277
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: DNA (mismatch repair protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=Q9M512_BRANA) HSP 1 Score: 137 bits (345), Expect = 4.810e-33 Identity = 73/124 (58.87%), Postives = 93/124 (75.00%), Query Frame = 1
Query: 904 VKLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1275
+K TP+EQQVV+LK KHP V+L+VE GYRYRFFGEDA AA+VL IYAHMDH+F ASVPTFRL VH+R LV+AGYK VGVV+Q E+AA+K+ G ++G F R L+ ++++AT
Sbjct: 64 IKYTPLEQQVVELKRKHPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRGLVNAGYK--------VGVVKQTETAAIKSHG----ANRAGPFFRGLSGLYTKAT 175
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: DNA (mismatch repair protein MSH3-like n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5TVC9_PRUAV) HSP 1 Score: 141 bits (355), Expect = 1.550e-32 Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 907 KLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1275
K TP+EQQVVDLK+++P VLL+VE GY+YRFFG+DA AA+VL IYAHMDHNF ASVPTFRL VH+RRLV AGYK VGVV+Q E+AA+KA G +SG F R L+A++++AT
Sbjct: 123 KFTPLEQQVVDLKKRYPDVLLMVEVGYKYRFFGQDAEIAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVSAGYK--------VGVVKQTETAAIKAHG----SNRSGPFGRGLSALYTKAT 233
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Match: DNA (mismatch repair protein MSH3-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S3X367_TOBAC) HSP 1 Score: 140 bits (353), Expect = 2.440e-32 Identity = 75/123 (60.98%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 907 KLTPMEQQVVDLKEKHPGVLLLVECGYRYRFFGEDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKARNEHLNRVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQAT 1275
K TP+EQQVV+LK K+P +LL++E GY+YRFFG+DA AA+VL IYAHMDHNF ASVPTFRL VH+RRLV+AGYK VGVV+Q E+AA+KA G K G F REL+A++++AT
Sbjct: 115 KYTPLEQQVVELKAKYPDILLMIEVGYKYRFFGQDAENAARVLGIYAHMDHNFLTASVPTFRLNVHVRRLVNAGYK--------VGVVKQTETAAIKAHG----SNKLGPFGRELSALYTKAT 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7626.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7626.1.1 >prot_H-canaliculatus_M_contigs7626.1.1 ID=prot_H-canaliculatus_M_contigs7626.1.1|Name=mRNA_H-canaliculatus_M_contigs7626.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=609bp AAPSGSGGRGTSTAAVRTTRAKKRTPSAVSRNAPHQKWQCLKCTFNNPAFback to top mRNA from alignment at H-canaliculatus_M_contigs7626:226..4710+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7626.1.1 ID=mRNA_H-canaliculatus_M_contigs7626.1.1|Name=mRNA_H-canaliculatus_M_contigs7626.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4485bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7626:226..4710+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7626:226..4710+ >mRNA_H-canaliculatus_M_contigs7626.1.1 ID=mRNA_H-canaliculatus_M_contigs7626.1.1|Name=mRNA_H-canaliculatus_M_contigs7626.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1827bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7626:226..4710+ (Hapterophycus canaliculatus Oshoro7m male)back to top |