mRNA_H-canaliculatus_M_contigs76256.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76256.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76256.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: DUF1501 (domain-containing protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848UDC3_9GAMM)

HSP 1 Score: 272 bits (696), Expect = 4.750e-87
Identity = 130/167 (77.84%), Postives = 143/167 (85.63%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGGTRKTDNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGALGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALTRDNIMNPEGDAAINENVAAESIYSI 501
            GLG WDDH+SA+E+YVPRM QVMEALRVAMKHIRY+D  HGG R+TDNI++ VHGDFGRNVNLNNS GWDHGNNQNLYTLGG A+RP  ALGKVVGRT+V GPA+QNRQYTQP  GSYEAEPLAIAST+Y+YFGA+NPQALTRD   NP GDAAINE    E   SI
Sbjct:  333 GLGGWDDHASAMEDYVPRMNQVMEALRVAMKHIRYADISHGGRRRTDNIVIKVHGDFGRNVNLNNSQGWDHGNNQNLYTLGGAAIRPNRALGKVVGRTDVSGPANQNRQYTQPADGSYEAEPLAIASTLYKYFGAQNPQALTRDAEQNPAGDAAINETYPPEPPVSI 499          
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A357IE92_9GAMM)

HSP 1 Score: 238 bits (607), Expect = 7.220e-74
Identity = 113/169 (66.86%), Postives = 139/169 (82.25%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGGTRKTDNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPR--GALGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALTRDNIMNPEGDAAINENVAAES-IYS 498
            GLG WDDH+SA+E Y PRM+Q+MEALRVA KHIRY+D+ +GG R+TDNII+ VHGDFGRNVNLNNS GWDHGNNQNLYT  G A+R     ALGK+VG+T++ GPA +NRQ+T PT  SYEAEP++IA+ VY+YFG +NPQ LT+D+ MNP GD AI+E VA E+ +YS
Sbjct:  316 GLGGWDDHNSALERYEPRMQQLMEALRVATKHIRYADTAYGGARRTDNIIINVHGDFGRNVNLNNSEGWDHGNNQNLYTFCGSAVRQGQGAALGKIVGKTDIVGPAKENRQFTAPTDDSYEAEPMSIAAGVYRYFGVQNPQVLTQDSDMNPGGDVAIDETVAGETTLYS 484          
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2A4SKK0_9GAMM)

HSP 1 Score: 226 bits (576), Expect = 4.270e-69
Identity = 106/165 (64.24%), Postives = 129/165 (78.18%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGGTRKTDNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGA--LGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALTRDNIMNPEGDAAINENVAAES 489
            GLG WDDH+SA E Y+PRMR +M ALRVAMKHIR+SD   GGTR T+NII+ VHGDFGRNVNLNNS GWDHGNNQ+ YTLGG  +RP GA  LGKVVG TE FG + QNRQ+T+PT  SY+AEPL++AS++Y YFG  NP+ LT+D +    G+  ++E VA E+
Sbjct:  329 GLGGWDDHNSAFERYIPRMRDLMRALRVAMKHIRFSDISQGGTRDTNNIIINVHGDFGRNVNLNNSQGWDHGNNQSFYTLGGNTVRPGGAAALGKVVGATERFGNSGQNRQFTRPTNSSYQAEPLSVASSIYSYFGVTNPEVLTQDALYAVNGEPPLDETVAGEA 493          
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: DUF1501 (domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C6EYN2_9GAMM)

HSP 1 Score: 220 bits (561), Expect = 1.270e-66
Identity = 105/162 (64.81%), Postives = 126/162 (77.78%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGGTRKTDNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGALGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALTRDNIMNPEGDAAINENVAAE 486
            GLG WDDH+SA++EY  RM+ +M  LR A KHIRY+    GG+  T NII+ V GDFGRNVNLNNS+GWDHGNNQNLYT GG  LRP GALGKVVG+TE FG + QNRQ+T+PT  SYE EP AIA+TVY+YFG +NP+ LTRD   +P+G+ AINE+ A E
Sbjct:  357 GLGGWDDHNSAVDEYTDRMQALMTTLRAATKHIRYATRPGGGS--TGNIIINVFGDFGRNVNLNNSMGWDHGNNQNLYTFGGADLRPAGALGKVVGKTERFGSSKQNRQFTRPTDDSYEFEPTAIAATVYKYFGVQNPEVLTRDTQYSPQGETAINESAAGE 516          
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0X5C2_9ZZZZ)

HSP 1 Score: 210 bits (535), Expect = 1.050e-62
Identity = 101/174 (58.05%), Postives = 124/174 (71.26%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGGT------------RKTDNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGALGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALTRDNIMNPEGDAAINENVAAE 486
            GLG WDDH ++I +Y  RMR +M+A+R AM HI+Y+      T            R+TDNII+ +HGDFGRNVNLN S+GWDHGNNQNLYT GG A+RP GALGKVVG+TE  G   QNRQ+T PT  SY+AEP++IAS+VY YFG +NP+ LT D  +NP GD  I+E VA E
Sbjct:  350 GLGGWDDHDNSIPKYEQRMRNLMKAMRAAMLHIQYAGDARNATADAQGLIADVAGRQTDNIIINIHGDFGRNVNLNGSMGWDHGNNQNLYTFGGAAVRPAGALGKVVGKTERIGSPGQNRQWTNPTDDSYQAEPMSIASSVYAYFGVQNPEVLTSDLNINPSGDPKIDETVAGE 523          
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: DUF1501 (domain-containing protein n=1 Tax=Saccharospirillum mangrovi TaxID=2161747 RepID=UPI000D365093)

HSP 1 Score: 201 bits (512), Expect = 2.390e-59
Identity = 98/167 (58.68%), Postives = 122/167 (73.05%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGG--TRKTDNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGA--LGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALTRDNIMNPEGDAAINENVAAES 489
            GLG WDDH++A++ Y  RM Q+  ALRVAMKHIR++D    G   R TDNII+ V GDFGR VNLNNS+GWDH NNQNLYTLGG  +RP GA  LGKV+G+T   G +  N QYT+PT  SYEAEP+A+AS++Y+YFGA+NP  +T D   NP GD  +NE ++  S
Sbjct:  352 GLGGWDDHNNAVDSYRARMTQLFAALRVAMKHIRHADGNTPGGLNRSTDNIIINVWGDFGRLVNLNNSMGWDHANNQNLYTLGGAGVRPGGASALGKVIGQTRRVGNSGTNNQYTEPTSSSYEAEPMAVASSLYRYFGAQNPSVMTADPEFNPNGDQPLNEQLSGIS 518          
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: DUF1501 (domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C5KWL3_9GAMM)

HSP 1 Score: 178 bits (452), Expect = 1.170e-52
Identity = 86/172 (50.00%), Postives = 114/172 (66.28%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGG-------TRKTDNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGA--LGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALTRDNIMNPEGDAAINENVAAES 489
            GLG WDDH++ ++ Y  RM  + E ++ A  HI+Y+D    G       TR TDNI++ + GDFGR VNLN + GWDHGNNQNLYT GG  +R  GA  LGKVVG+T   G +  N Q T+P QGSYEAEP+++A+TV+ YFG ++P+ LT D  +NP G  AI+E    E+
Sbjct:  129 GLGGWDDHNNGVDNYRNRMNNLFEVMKAATLHIKYADQSRSGLLTLDGNTRPTDNIVINMFGDFGRRVNLNGNQGWDHGNNQNLYTFGGAGVRAGGAAALGKVVGKTVRVGQSGTNNQVTEPAQGSYEAEPMSVAATVFSYFGVQDPEVLTADVELNPAGVPAIDETQPGEA 300          
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: DUF1501 (domain-containing protein n=1 Tax=Candidatus Manganitrophus noduliformans TaxID=2606439 RepID=A0A7X6DR02_9BACT)

HSP 1 Score: 179 bits (453), Expect = 5.090e-51
Identity = 87/142 (61.27%), Postives = 108/142 (76.06%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGGTRKTDNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGALGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALT 426
            GLG WDDHS AI EY  R+R++M+AL VA KH+R +          ++I++ V GDFGRNVNLNNSIGWDHGNNQNLYTLGG A+RP GALGKVVG+T+  G   QNRQ+T PT  SY+ EP AIAS++Y+Y+G +NP+ LT
Sbjct:  331 GLGGWDDHSDAIPEYTARIRELMDALAVAAKHMRLAGR--------NDIVINVFGDFGRNVNLNNSIGWDHGNNQNLYTLGGAAVRP-GALGKVVGKTQRIGTPFQNRQFTAPTDDSYQCEPFAIASSLYKYYGVQNPEILT 463          
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: DUF1501 (domain-containing protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A521RSZ2_9BACT)

HSP 1 Score: 177 bits (449), Expect = 2.450e-50
Identity = 87/142 (61.27%), Postives = 109/142 (76.76%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGGTRKTDNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGALGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALT 426
            GLG WDDHS AI EY  R+R++M+AL VA KH++        T + D II+ V GDFGRNVNLNNS+GWDHGNNQNLYTLGG A+RP GALGK+VG+T+  G   +NRQ+T+PT  SY+ EP A+AS+VY+YFG +NP+ LT
Sbjct:  342 GLGGWDDHSDAIPEYTGRIRELMDALAVAAKHMKL-------TGRND-IIINVFGDFGRNVNLNNSMGWDHGNNQNLYTLGGSAVRP-GALGKIVGKTQRVGTPFENRQFTEPTADSYQCEPFAVASSVYKYFGIQNPEILT 474          
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2A4RIN3_9GAMM)

HSP 1 Score: 174 bits (442), Expect = 4.480e-49
Identity = 87/168 (51.79%), Postives = 114/168 (67.86%), Query Frame = 1
Query:    1 GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEH-GGTRKT--DNIIMMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGA--LGKVVGRTEVFGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALTRDNIMNPEGDAAINENVAAES 489
            GLG WDDH++ I+ Y  RM  +M  +  AM HI+Y ++    GT +T  +NI++ + GDFGR VNLNN+ GWDHGNNQNLYT GG  +R  GA  LGKVVG T+  G +  N Q T+P QGSYEAEP+++ASTV+ YFG +NP+ LT D+ +NP G   I E    E+
Sbjct:  349 GLGGWDDHNNGIDSYRNRMSALMAVMNAAMLHIKYYNANTLNGTPRTTNNNIVINMSGDFGRRVNLNNNQGWDHGNNQNLYTFGGSQVRAGGAAALGKVVGTTQRVGTSGTNNQVTEPVQGSYEAEPMSVASTVFSYFGVQNPEILTADDELNPNGVPVIIETTPGEA 516          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76256.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DUF15014.750e-8777.84domain-containing protein n=1 Tax=Granulosicoccus ... [more]
Uncharacterized7.220e-7466.86protein n=1 Tax=Gammaproteobacteria bacterium TaxI... [more]
Uncharacterized4.270e-6964.24protein n=2 Tax=Gammaproteobacteria TaxID=1236 Rep... [more]
DUF15011.270e-6664.81domain-containing protein n=1 Tax=Gammaproteobacte... [more]
Uncharacterized1.050e-6258.05protein n=1 Tax=hydrothermal vent metagenome TaxID... [more]
DUF15012.390e-5958.68domain-containing protein n=1 Tax=Saccharospirillu... [more]
DUF15011.170e-5250.00domain-containing protein (Fragment) n=1 Tax=Gamma... [more]
DUF15015.090e-5161.27domain-containing protein n=1 Tax=Candidatus Manga... [more]
DUF15012.450e-5061.27domain-containing protein n=1 Tax=Nitrospirae bact... [more]
Uncharacterized4.480e-4951.79protein n=1 Tax=Gammaproteobacteria bacterium TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76256contigH-canaliculatus_M_contigs76256:24..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1120973.AQXL01000125_gene3127
PFAMsDUF1501
Model size504
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000183
EggNOG OGsCOG4102@1|root,COG4102@2|Bacteria,1VDF3@1239|Firmicutes,4HV1I@91061|Bacilli
DescriptionProtein of unknown function (DUF1501)
Cds size504
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.756277-CDS-H-canaliculatus_M_contigs76256:23..5271696854100.756277-CDS-H-canaliculatus_M_contigs76256:23..527Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76256 24..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76256.1.1prot_H-canaliculatus_M_contigs76256.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76256 24..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76256.1.1

>prot_H-canaliculatus_M_contigs76256.1.1 ID=prot_H-canaliculatus_M_contigs76256.1.1|Name=mRNA_H-canaliculatus_M_contigs76256.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=168bp
GLGSWDDHSSAIEEYVPRMRQVMEALRVAMKHIRYSDSEHGGTRKTDNII
MMVHGDFGRNVNLNNSIGWDHGNNQNLYTLGGEALRPRGALGKVVGRTEV
FGPADQNRQYTQPTQGSYEAEPLAIASTVYQYFGARNPQALTRDNIMNPE
GDAAINENVAAESIYSI*
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mRNA from alignment at H-canaliculatus_M_contigs76256:24..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76256.1.1 ID=mRNA_H-canaliculatus_M_contigs76256.1.1|Name=mRNA_H-canaliculatus_M_contigs76256.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=504bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76256:24..527- (Hapterophycus canaliculatus Oshoro7m male)
GGTCTTGGCAGCTGGGATGATCATAGTTCCGCAATCGAAGAATATGTCCC GCGTATGCGCCAGGTGATGGAAGCCCTTCGAGTTGCGATGAAACACATTC GCTATTCAGATAGTGAACATGGTGGAACTCGTAAAACCGACAACATCATC ATGATGGTACACGGCGATTTTGGACGCAATGTAAATCTTAACAATTCCAT TGGCTGGGATCACGGCAACAATCAGAATCTTTACACCTTAGGCGGTGAAG CACTGCGGCCACGTGGAGCATTAGGGAAGGTCGTAGGCCGCACTGAAGTG TTTGGACCTGCTGATCAAAATAGACAATACACTCAACCCACGCAAGGAAG CTATGAAGCCGAACCACTAGCGATTGCATCTACTGTGTATCAATATTTTG GAGCCAGAAACCCTCAGGCTCTGACGAGGGATAATATTATGAACCCTGAA GGTGATGCAGCAATCAACGAGAATGTCGCTGCAGAATCGATTTATTCAAT CTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76256:24..527-

>mRNA_H-canaliculatus_M_contigs76256.1.1 ID=mRNA_H-canaliculatus_M_contigs76256.1.1|Name=mRNA_H-canaliculatus_M_contigs76256.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=504bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76256:24..527- (Hapterophycus canaliculatus Oshoro7m male)
GGTCTTGGCAGCTGGGATGATCATAGTTCCGCAATCGAAGAATATGTCCC
GCGTATGCGCCAGGTGATGGAAGCCCTTCGAGTTGCGATGAAACACATTC
GCTATTCAGATAGTGAACATGGTGGAACTCGTAAAACCGACAACATCATC
ATGATGGTACACGGCGATTTTGGACGCAATGTAAATCTTAACAATTCCAT
TGGCTGGGATCACGGCAACAATCAGAATCTTTACACCTTAGGCGGTGAAG
CACTGCGGCCACGTGGAGCATTAGGGAAGGTCGTAGGCCGCACTGAAGTG
TTTGGACCTGCTGATCAAAATAGACAATACACTCAACCCACGCAAGGAAG
CTATGAAGCCGAACCACTAGCGATTGCATCTACTGTGTATCAATATTTTG
GAGCCAGAAACCCTCAGGCTCTGACGAGGGATAATATTATGAACCCTGAA
GGTGATGCAGCAATCAACGAGAATGTCGCTGCAGAATCGATTTATTCAAT
CTGA
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