mRNA_H-canaliculatus_M_contigs76247.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76247.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76247.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE0_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 4.080e-39
Identity = 77/92 (83.70%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYNEVQI 288
            ACLGGYQLVYGVAPALHSPLMSVTNAISGMTA         GL P +AGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEE NE+ I
Sbjct:  430 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAVGGMVLLGGGLFPENAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEENNEITI 521
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BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMZ8_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.080e-38
Identity = 75/92 (81.52%), Postives = 79/92 (85.87%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYNEVQI 288
            ACLGGYQLVYGVAPALHSPLMSVTNAISGMTA         G+ P +AGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEE NE+ +
Sbjct:  562 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAVGGMVLLGGGIFPENAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEENNEITV 653
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BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EIK6_9CRYP)

HSP 1 Score: 114 bits (286), Expect = 9.520e-28
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYN 276
            AC+GGY  V+GV PALHSPLMSVTNAISGMTA         GL P  +GQ LGAAA+ +SSVNIVGGF +T++MLD+F+RP DP E+N
Sbjct:  492 ACIGGYYTVWGVVPALHSPLMSVTNAISGMTAAGGMVIMGGGLFPTTSGQLLGAAAVAMSSVNIVGGFIITQRMLDMFRRPTDPAEHN 579
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BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase n=3 Tax=Guillardia theta TaxID=55529 RepID=L1K0E8_GUITC)

HSP 1 Score: 113 bits (282), Expect = 4.330e-27
Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYN 276
            AC+GGY  V+GV PALHSPLMSVTNAISGMTA         GL P  + Q LGA A+ +SSVNIVGGF +T++MLD+F+RP DPEE+N
Sbjct:  465 ACIGGYYTVWGVVPALHSPLMSVTNAISGMTAAGGMVIMGGGLFPTTSSQMLGAVAVAMSSVNIVGGFIITQRMLDMFRRPTDPEEHN 552
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BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXK7_CHLSO)

HSP 1 Score: 113 bits (282), Expect = 4.370e-27
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYN 276
            A + GYQ V+GV PALHSPLMSVTNAISG+TA   XXXXXXG LPG A QAL  AALLVS+VNI GGF +T++MLD+FKRP DP EYN
Sbjct:  815 ASICGYQTVWGVTPALHSPLMSVTNAISGLTAVGGXXXXXXGFLPGSAAQALACAALLVSAVNIGGGFTITQRMLDMFKRPTDPPEYN 902
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BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN92_CHOCR)

HSP 1 Score: 111 bits (277), Expect = 2.050e-26
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYNEV 282
            A + GYQ V+GVAPALHSPLMSVTNAISG+TA         G LP     AL A+A+L S+VNI GGF VT++MLD+FKRPGDPEE+N+V
Sbjct:  488 ASVCGYQTVWGVAPALHSPLMSVTNAISGLTAVGGLICMGGGFLPDSTATALAASAVLASAVNIGGGFTVTQRMLDMFKRPGDPEEHNDV 577
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BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4S1_9FLOR)

HSP 1 Score: 110 bits (274), Expect = 5.210e-26
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYNEV 282
            A + GYQ V+GVAPALHSPLMSVTNAISG+TA         G+ P     +L A+A+  S+VNI GGFRVT++MLD+FKRPGDPEE+N+V
Sbjct:  483 ASVCGYQTVWGVAPALHSPLMSVTNAISGLTAVGGLMCMGGGIFPDSVAASLAASAVFASAVNIGGGFRVTQRMLDMFKRPGDPEEHNDV 572
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TWZ9_CHLSO)

HSP 1 Score: 110 bits (274), Expect = 5.230e-26
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYNEV 282
            A + GYQ V+GV PALHSPLMSVTNAISG+TA         GL+PG+  QAL A A+L S+VNI GGF +T++MLD+FKRP DP EYN++
Sbjct:  534 ASICGYQTVWGVTPALHSPLMSVTNAISGLTAVGGMVLAGGGLVPGNTPQALAAGAILASAVNIGGGFTITQRMLDMFKRPTDPPEYNQL 623
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VQW3_9CHLO)

HSP 1 Score: 109 bits (273), Expect = 7.120e-26
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYNEV 282
            A + GYQ V+GV PALHSPLMSVTNAISG+TA         GL+PG+  Q L AAA++ S+VNI GGF +T++MLD+FKRP DP EYN++
Sbjct:  532 ASICGYQTVWGVTPALHSPLMSVTNAISGLTAVGGMVLAGGGLVPGNTAQGLAAAAMVASAVNIGGGFTITQRMLDMFKRPTDPPEYNQL 621
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Match: Proton-translocating (NAD(P)(+) transhydrogenase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VNZ2_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 9.110e-26
Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   13 ACLGGYQLVYGVAPALHSPLMSVTNAISGMTAXXXXXXXXXGLLPGDAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYN 276
            A + GYQ V+GV PALHSPLMSVTNAISG+TA         GL+PG A QAL A A+LVS+VNI GGF +T++MLD+FKRP DP E+N
Sbjct:   79 ASICGYQTVWGVTPALHSPLMSVTNAISGLTAVGGMVLAGGGLVPGSATQALAALAVLVSAVNIGGGFTITQRMLDMFKRPTDPPEHN 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76247.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Proton-translocating4.080e-3983.70NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus sili... [more]
Proton-translocating1.080e-3881.52NAD(P)(+) transhydrogenase n=1 Tax=Ectocarpus sp. ... [more]
Proton-translocating9.520e-2864.77NAD(P)(+) transhydrogenase (Fragment) n=1 Tax=Hanu... [more]
Proton-translocating4.330e-2763.64NAD(P)(+) transhydrogenase n=3 Tax=Guillardia thet... [more]
Proton-translocating4.370e-2772.73NAD(P)(+) transhydrogenase n=2 Tax=Chlorella sorok... [more]
Proton-translocating2.050e-2663.33NAD(P)(+) transhydrogenase n=1 Tax=Chondrus crispu... [more]
Proton-translocating5.210e-2661.11NAD(P)(+) transhydrogenase n=1 Tax=Gracilariopsis ... [more]
Proton-translocating5.230e-2661.11NAD(P)(+) transhydrogenase n=2 Tax=Chlorella sorok... [more]
Proton-translocating7.120e-2660.00NAD(P)(+) transhydrogenase n=1 Tax=Micractinium co... [more]
Proton-translocating9.110e-2663.64NAD(P)(+) transhydrogenase n=1 Tax=Micractinium co... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76247contigH-canaliculatus_M_contigs76247:116..403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSE0
PFAMsAlaDh_PNT_C,AlaDh_PNT_N,PNTB,PNTB_4TM
Model size288
Max annot lvl2759|Eukaryota
KEGG rclassRC00001
KEGG koko:K00323
KEGG ReactionR00112
KEGG Pathwayko00760,ko01100,map00760,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.68e-40
EggNOG OGsCOG1282@1|root,2QQ0A@2759|Eukaryota
EC1.6.1.2
DescriptionTranshydrogenase
Cds size288
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.718688-CDS-H-canaliculatus_M_contigs76247:115..4031696854100.718688-CDS-H-canaliculatus_M_contigs76247:115..403Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76247 116..403 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76247.1.1prot_H-canaliculatus_M_contigs76247.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76247 116..403 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76247.1.1

>prot_H-canaliculatus_M_contigs76247.1.1 ID=prot_H-canaliculatus_M_contigs76247.1.1|Name=mRNA_H-canaliculatus_M_contigs76247.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=96bp
TAQQACLGGYQLVYGVAPALHSPLMSVTNAISGMTAVGGMVLLGGGLLPG
DAGQALGAAALLVSSVNIVGGFRVTKKMLDLFKRPGDPEEYNEVQI
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mRNA from alignment at H-canaliculatus_M_contigs76247:116..403-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76247.1.1 ID=mRNA_H-canaliculatus_M_contigs76247.1.1|Name=mRNA_H-canaliculatus_M_contigs76247.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=288bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76247:116..403- (Hapterophycus canaliculatus Oshoro7m male)
ACCGCCCAACAGGCGTGCCTCGGAGGCTATCAGCTCGTGTACGGCGTGGC
GCCGGCGCTGCACTCCCCCCTCATGTCGGTGACCAACGCCATCTCCGGCA
TGACGGCGGTCGGGGGCATGGTCCTGCTCGGGGGCGGTCTGCTGCCCGGG
GACGCGGGCCAGGCGCTGGGCGCGGCGGCGCTCCTGGTGTCCTCGGTGAA
CATCGTGGGCGGCTTCCGCGTGACGAAAAAGATGCTGGATCTCTTCAAGC
GGCCCGGGGACCCTGAGGAGTACAACGAGGTACAGATA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76247:116..403-

>mRNA_H-canaliculatus_M_contigs76247.1.1 ID=mRNA_H-canaliculatus_M_contigs76247.1.1|Name=mRNA_H-canaliculatus_M_contigs76247.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=288bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76247:116..403- (Hapterophycus canaliculatus Oshoro7m male)
ACCGCCCAACAGGCGTGCCTCGGAGGCTATCAGCTCGTGTACGGCGTGGC
GCCGGCGCTGCACTCCCCCCTCATGTCGGTGACCAACGCCATCTCCGGCA
TGACGGCGGTCGGGGGCATGGTCCTGCTCGGGGGCGGTCTGCTGCCCGGG
GACGCGGGCCAGGCGCTGGGCGCGGCGGCGCTCCTGGTGTCCTCGGTGAA
CATCGTGGGCGGCTTCCGCGTGACGAAAAAGATGCTGGATCTCTTCAAGC
GGCCCGGGGACCCTGAGGAGTACAACGAGGTACAGATA
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