mRNA_H-canaliculatus_M_contigs7621.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs7621.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs7621.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: ZZ-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI15_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.410e-26
Identity = 53/68 (77.94%), Postives = 59/68 (86.76%), Query Frame = 1

Query:   16 VHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAAR-SPFPFLKIRTPSQAPAAIVCLLKPDQ 216
            VH  V+CD CDVCPI+GTRYKCAVR+DFDLCE CER+   + SPFPFLKIRTP+QAPAAIVCLLK DQ
Sbjct:  430 VHHGVKCDACDVCPIIGTRYKCAVRADFDLCEECERAPVGQGSPFPFLKIRTPTQAPAAIVCLLKHDQ 497

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C969_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.180e-17
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1

Query:   13 AVHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAARSPFPFLKIRTPSQAPAAIVCLLK 207
            AVH+ VQCD C VCPI G RYK +V +D+DLC ACE   AA    P+LKI TP+QAPA +VC+L+
Sbjct:  255 AVHRGVQCDVCGVCPITGPRYKSSVHADYDLCAACEAGGAAAEFSPYLKIPTPAQAPAVLVCVLR 319

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: Hypothetical (protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SVR0_HETAK)

HSP 1 Score: 77.0 bits (188), Expect = 7.900e-15
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = 1

Query:   19 HKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAARSPFPFLKIRTPSQAPAAIVCLLKPDQ 216
            H  + CD CD  P+VG RYKCAVR DFDLC  CE  A  +S +P+LKI  PSQAPAA++ +LKPD+
Sbjct:  143 HPGIICDHCDQ-PVVGVRYKCAVRQDFDLCSKCE--AKDQSDYPYLKICHPSQAPAALMTILKPDE 205

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D636_HETAK)

HSP 1 Score: 76.3 bits (186), Expect = 1.530e-14
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1

Query:   16 VHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAARSPFPFLKIRTPSQAPAAIVCLLKPDQ 216
            VH  V CD C   PIVG RYKCAVR DFDLC  CE   A    +P+LKIR PSQAPAA++ +LK ++
Sbjct:  201 VHPHVTCDACGRNPIVGVRYKCAVRDDFDLCAPCEAKDA-DCKYPYLKIRRPSQAPAALITVLKSEE 266

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8T5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.800e-14
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 1

Query:    7 SPAVHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAARSPFPFLKIRTPSQAPAAIVCLLK 207
            +PAVH++V CD C+V PI G RYKCAV   FDLCE C  +        FL IRTPSQAPAAI+ +++
Sbjct:  231 APAVHRNVTCDQCNVGPIQGVRYKCAVCRSFDLCEKCNAAPEHDPSHAFLMIRTPSQAPAAIMAVVR 297

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SUF4_HETAK)

HSP 1 Score: 72.8 bits (177), Expect = 2.430e-13
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1

Query:    7 SPAVHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAARSPFPFLKIRTPSQAPAAIVCLLKPDQ 216
            S   H  + CD CD  PIVG RYKCAVR DFDLC  CE  A  +S +P+LKI  PSQ P A++ ++KP Q
Sbjct:  110 SGIAHPGIICDHCDQ-PIVGVRYKCAVRQDFDLCSNCE--AKDKSNYPYLKICNPSQVPVALLTIMKPGQ 176

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AS31_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.440e-13
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1

Query:    1 ETSPAVHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAARSPFPFLKIRTPSQAPAAIVCLLKPD 213
            + S  +H  V CD CD  PI+G RYKC+ R D+DLC  CE +    S +P+LKI+TP  AP  I+ + K D
Sbjct:  111 DASETIHHGVCCDGCDASPIIGVRYKCSYRKDYDLCSKCESTDT--SQYPYLKIKTPEHAPGVIIAIPKED 179

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BGJ0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.220e-13
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 1

Query:    4 TSPAVHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAARSPFPFLKIRTPSQAPAAIVCL 201
            +S   H +V CD C++ PI+G R+KC+ R ++DLCE CE  A   SP+PFLKI+TP QAP  +V +
Sbjct:  136 SSSVAHLNVACDGCNMTPIIGARFKCSFRQNYDLCERCE--AVDSSPYPFLKIKTPEQAPKLLVAV 199

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT26_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.030e-11
Identity = 37/69 (53.62%), Postives = 41/69 (59.42%), Query Frame = 1

Query:    7 SPAVHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACER------SAAARSPFPFLKIRTPSQAPAAIV 195
            +PAVH  V CD C + PIVGTRYKCAVR D+DLC ACE          A+  FP LKI    QAP   V
Sbjct:  275 NPAVHLGVGCDGCRMSPIVGTRYKCAVREDYDLCAACESRRCTDGGLTAKDLFPMLKIDRLDQAPGTFV 343

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BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Match: ZZ-type (domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BFS0_PARTE)

HSP 1 Score: 64.7 bits (156), Expect = 1.450e-10
Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1

Query:   16 VHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAARSPFPFLKIRTPSQAPAAIVCLL--KPD 213
            VH+ V CD C++ PIVG RYKCAV  DFDLCE CE           LKIR P QAP+ I+  +  KPD
Sbjct:  154 VHQRVACDGCEMFPIVGIRYKCAVCQDFDLCEKCEDLGTHEHAM--LKIRNPGQAPSIIITAIGDKPD 219

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs7621.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
ZZ-type	1.410e-26	77.94	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Uncharacterized	2.180e-17	60.00	protein n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]
Hypothetical	7.900e-15	59.09	protein n=4 Tax=Heterosigma akashiwo TaxID=2829 Re...	[more]
Hypothetical	1.530e-14	58.21	protein n=2 Tax=Heterosigma akashiwo TaxID=2829 Re...	[more]
Hypothetical	6.800e-14	55.22	protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014...	[more]
Hypothetical	2.430e-13	54.29	protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re...	[more]
Hypothetical	3.440e-13	46.48	protein n=2 Tax=Dictyocha speculum TaxID=35687 Rep...	[more]
Hypothetical	6.220e-13	50.00	protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep...	[more]
Hypothetical	2.030e-11	53.62	protein n=1 Tax=Spumella elongata TaxID=89044 RepI...	[more]
ZZ-type	1.450e-10	52.94	domain-containing protein n=1 Tax=Paramecium tetra...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs7621	contig	H-canaliculatus_M_contigs7621:385..600 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	36331.EPrPI00000024107
PFAMs	N_BRCA1_IG,PB1,ZZ
Model size	216
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05925,ko:K17987,ko:K21997
KEGG Pathway	ko04137,map04137
Hectar predicted targeting category	other localisation
GOs	GO:0000322,GO:0000323,GO:0000324,GO:0000328,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005775,GO:0005829,GO:0006914,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016043,GO:0016236,GO:0022607,GO:0031410,GO:0031974,GO:0031982,GO:0032182,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051258,GO:0051259,GO:0051641,GO:0061919,GO:0061957,GO:0065003,GO:0070013,GO:0070727,GO:0071840,GO:0072665,GO:0097708,GO:0120113
Exons	1
Evalue	2.1e-11
EggNOG OGs	KOG4582@1\|root,KOG4582@2759\|Eukaryota
EC	2.1.1.62
Description	zinc ion binding
Cds size	216
COG category	V
BRITE	ko00000,ko00001,ko01000,ko03019,ko03029,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854100.4139442-CDS-H-canaliculatus_M_contigs7621:384..600	1696854100.4139442-CDS-H-canaliculatus_M_contigs7621:384..600	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs7621 385..600 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs7621.1.1	prot_H-canaliculatus_M_contigs7621.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs7621 385..600 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs7621:385..600-
coding sequence from alignment at H-canaliculatus_M_contigs7621:385..600-

protein sequence of mRNA_H-canaliculatus_M_contigs7621.1.1

>prot_H-canaliculatus_M_contigs7621.1.1 ID=prot_H-canaliculatus_M_contigs7621.1.1|Name=mRNA_H-canaliculatus_M_contigs7621.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=72bp
ETSPAVHKDVQCDFCDVCPIVGTRYKCAVRSDFDLCEACERSAAARSPFP
FLKIRTPSQAPAAIVCLLKPDQ

mRNA from alignment at H-canaliculatus_M_contigs7621:385..600-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs7621.1.1 ID=mRNA_H-canaliculatus_M_contigs7621.1.1|Name=mRNA_H-canaliculatus_M_contigs7621.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=216bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7621:385..600- (Hapterophycus canaliculatus Oshoro7m male)
GAAACCTCCCCGGCGGTGCACAAGGACGTGCAGTGCGACTTCTGCGACGT
GTGCCCCATCGTCGGCACGCGGTACAAGTGCGCGGTCCGTTCGGACTTCG
ACCTGTGCGAGGCCTGCGAAAGGTCGGCCGCCGCGCGGAGCCCCTTCCCC
TTCCTCAAGATCAGGACGCCGTCCCAGGCCCCCGCGGCCATCGTGTGCCT
GCTCAAGCCGGACCAG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7621:385..600-

>mRNA_H-canaliculatus_M_contigs7621.1.1 ID=mRNA_H-canaliculatus_M_contigs7621.1.1|Name=mRNA_H-canaliculatus_M_contigs7621.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=216bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7621:385..600- (Hapterophycus canaliculatus Oshoro7m male)
GAAACCTCCCCGGCGGTGCACAAGGACGTGCAGTGCGACTTCTGCGACGT
GTGCCCCATCGTCGGCACGCGGTACAAGTGCGCGGTCCGTTCGGACTTCG
ACCTGTGCGAGGCCTGCGAAAGGTCGGCCGCCGCGCGGAGCCCCTTCCCC
TTCCTCAAGATCAGGACGCCGTCCCAGGCCCCCGCGGCCATCGTGTGCCT
GCTCAAGCCGGACCAG