mRNA_H-canaliculatus_M_contigs76206.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76206.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76206.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C5ZQP2_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 3.030e-8
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:   70 PTIQRKALSGVSQTLEEWFPGLVRSTTASTS 162
            PTIQR+ALSGVSQTLE+WFPG+VRSTTA TS
Sbjct: 1156 PTIQRRALSGVSQTLEDWFPGMVRSTTADTS 1186
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BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5TK12_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 3.710e-7
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   64 TCPTIQRKALSGVSQTLEEWFPGLVRSTTASTS 162
            + PTIQR AL GVSQTLE WFPG+VRSTTA TS
Sbjct: 1218 SAPTIQRHALGGVSQTLESWFPGMVRSTTADTS 1250
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BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Match: AsmA_2 (domain-containing protein n=1 Tax=Rhodopirellula sallentina SM41 TaxID=1263870 RepID=M5U025_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 3.710e-7
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   64 TCPTIQRKALSGVSQTLEEWFPGLVRSTTASTS 162
            + PTIQR AL GVSQTLE WFPG+VRSTTA TS
Sbjct: 1225 SAPTIQRHALGGVSQTLESWFPGMVRSTTADTS 1257
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BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodopirellula solitaria TaxID=2527987 RepID=A0A5C5XWV7_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.320e-6
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   70 PTIQRKALSGVSQTLEEWFPGLVRSTTASTSSGANR 177
            PTIQR+ LSGVSQTLE WFP ++RSTTA T +   R
Sbjct: 1164 PTIQRRTLSGVSQTLESWFPSMIRSTTAETPTPTRR 1199
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BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Match: AsmA_2 (domain-containing protein n=2 Tax=Rhodopirellula islandica TaxID=595434 RepID=A0A0J1BGW0_RHOIS)

HSP 1 Score: 51.6 bits (122), Expect = 4.540e-6
Identity = 21/28 (75.00%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:   70 PTIQRKALSGVSQTLEEWFPGLVRSTTA 153
            PTI+RK+LSG++QT+E+WFPG+VRSTTA
Sbjct: 1114 PTIRRKSLSGITQTMEDWFPGMVRSTTA 1141
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BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Match: AsmA_2 (domain-containing protein n=10 Tax=Rhodopirellula TaxID=265488 RepID=Q7UQI3_RHOBA)

HSP 1 Score: 51.6 bits (122), Expect = 4.540e-6
Identity = 21/28 (75.00%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:   70 PTIQRKALSGVSQTLEEWFPGLVRSTTA 153
            PTI+RK+LSG++QT+E+WFPG+VRSTTA
Sbjct: 1120 PTIRRKSLSGITQTMEDWFPGMVRSTTA 1147
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BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planctomycetes bacterium Poly21 TaxID=2528014 RepID=A0A5C6C5V6_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 6.220e-6
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   64 TCPTIQRKALSGVSQTLEEWFPGLVRSTTASTS 162
            + PTIQR+ LSGVSQTLE WFP ++RSTTA  S
Sbjct: 1163 SAPTIQRRTLSGVSQTLESWFPSMIRSTTAEAS 1195
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BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2014065 RepID=A0A2G1W6I2_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 1.590e-5
Identity = 20/28 (71.43%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:   70 PTIQRKALSGVSQTLEEWFPGLVRSTTA 153
            PTI+RK+L+G++QT+E+WFPG+VRSTTA
Sbjct: 1107 PTIRRKSLNGITQTVEDWFPGMVRSTTA 1134
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BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Match: hypothetical (protein n=2 Tax=unclassified Rhodopirellula TaxID=2624920 RepID=UPI001E52A38A)

HSP 1 Score: 49.3 bits (116), Expect = 2.980e-5
Identity = 19/28 (67.86%), Postives = 28/28 (100.00%), Query Frame = 1 
Query:   70 PTIQRKALSGVSQTLEEWFPGLVRSTTA 153
            PTI+R++LSG++QT+E+WFPG+VR+TTA
Sbjct: 1116 PTIRRRSLSGITQTMEDWFPGMVRATTA 1143
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76206.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized3.030e-887.10protein n=2 Tax=Rhodopirellula pilleata TaxID=2714... [more]
Uncharacterized3.710e-778.79protein n=2 Tax=Rhodopirellula TaxID=265488 RepID=... [more]
AsmA_23.710e-778.79domain-containing protein n=1 Tax=Rhodopirellula s... [more]
Uncharacterized3.320e-666.67protein n=1 Tax=Rhodopirellula solitaria TaxID=252... [more]
AsmA_24.540e-675.00domain-containing protein n=2 Tax=Rhodopirellula i... [more]
AsmA_24.540e-675.00domain-containing protein n=10 Tax=Rhodopirellula ... [more]
Uncharacterized6.220e-669.70protein n=1 Tax=Planctomycetes bacterium Poly21 Ta... [more]
Uncharacterized1.590e-571.43protein n=1 Tax=Rhodopirellula bahusiensis TaxID=2... [more]
hypothetical2.980e-567.86protein n=2 Tax=unclassified Rhodopirellula TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76206contigH-canaliculatus_M_contigs76206:2..181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog595460.RRSWK_03438
PFAMsAsmA_2
Model size181
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.08e-08
EggNOG OGsCOG2982@1|root,COG2982@2|Bacteria,2IYVI@203682|Planctomycetes
DescriptionProtein involved in outer membrane biogenesis
Cds size180
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854100.3795795-CDS-H-canaliculatus_M_contigs76206:1..1811696854100.3795795-CDS-H-canaliculatus_M_contigs76206:1..181Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76206 2..181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76206.1.1prot_H-canaliculatus_M_contigs76206.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76206 2..181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76206.1.1

>prot_H-canaliculatus_M_contigs76206.1.1 ID=prot_H-canaliculatus_M_contigs76206.1.1|Name=mRNA_H-canaliculatus_M_contigs76206.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=60bp
IHQGTECNSKDRMNASRKSHTTCPTIQRKALSGVSQTLEEWFPGLVRSTT
ASTSSGANR*
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mRNA from alignment at H-canaliculatus_M_contigs76206:2..181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76206.1.1 ID=mRNA_H-canaliculatus_M_contigs76206.1.1|Name=mRNA_H-canaliculatus_M_contigs76206.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76206:2..181+ (Hapterophycus canaliculatus Oshoro7m male)
ATCCATCAAGGCACGGAGTGCAACAGCAAGGACCGGATGAACGCGTCGAG
AAAATCACACACAACCTGTCCGACGATCCAACGAAAAGCACTGTCTGGCG
TCAGCCAAACCCTGGAAGAATGGTTTCCTGGGCTCGTTCGATCCACCACC
GCGAGTACGTCTAGCGGCGCAAATCGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76206:2..181+

>mRNA_H-canaliculatus_M_contigs76206.1.1 ID=mRNA_H-canaliculatus_M_contigs76206.1.1|Name=mRNA_H-canaliculatus_M_contigs76206.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76206:2..181+ (Hapterophycus canaliculatus Oshoro7m male)
ATCCATCAAGGCACGGAGTGCAACAGCAAGGACCGGATGAACGCGTCGAG
AAAATCACACACAACCTGTCCGACGATCCAACGAAAAGCACTGTCTGGCG
TCAGCCAAACCCTGGAAGAATGGTTTCCTGGGCTCGTTCGATCCACCACC
GCGAGTACGTCTAGCGGCGCAAATCGCTAG
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