mRNA_H-canaliculatus_M_contigs76172.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs76172.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs76172.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1H6_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.460e-22
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 1

Query:   10 DFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            DFQ AL EV PKFGAD+QEL+ LYANGIVPY QEF+ V+ TLGRL+EQTRLSERTPIMSV
Sbjct:  420 DFQSALCEVHPKFGADSQELETLYANGIVPYSQEFDKVQVTLGRLIEQTRLSERTPIMSV 479

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZT3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.570e-19
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 1

Query:    7 QDFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            QDF+ AL E+QPKFGA+N+EL A+Y NGIV YG  FED+ +TL RLVEQTR SERTP+MSV
Sbjct:  465 QDFELALCEIQPKFGANNEELSAMYRNGIVHYGPAFEDISSTLRRLVEQTRTSERTPLMSV 525

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZP61_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.100e-17
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 1

Query:    7 QDFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            QDFQ+AL +V+PKFGA +QEL+A Y NG VPYG  F+ + +TLGRLVEQ R S+RTP+MSV
Sbjct:  503 QDFQQALNDVEPKFGAKSQELKAHYRNGFVPYGASFDQMMSTLGRLVEQVRTSDRTPLMSV 563

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX02_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.500e-17
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1

Query:   10 DFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            DFQRAL +V+PKFGA + EL+ALY NGIVP+GQ F ++  TL RLVEQ R+S+RTP+MSV
Sbjct:  435 DFQRALQDVEPKFGAKSTELKALYRNGIVPFGQNFSNMMATLTRLVEQVRISDRTPLMSV 494

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QC70_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.810e-17
Identity = 39/61 (63.93%), Postives = 52/61 (85.25%), Query Frame = 1

Query:    7 QDFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            +DF+RALT+V+PKFGA +QEL+ALY NG VPYG+ F+ + +T+ RLVEQ R S++TPIMSV
Sbjct:  474 EDFERALTDVEPKFGAKSQELKALYRNGFVPYGETFDFLMSTMERLVEQVRSSDKTPIMSV 534

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MX11_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.830e-17
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 1

Query:   10 DFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            DF RAL +VQPKFGA +QEL+ALY NG VPYG EF+ +  T+ RLVEQ R SE+TP+MSV
Sbjct:  490 DFDRALNDVQPKFGAKSQELKALYRNGFVPYGDEFDMLMGTMDRLVEQVRASEKTPLMSV 549

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SFV3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 9.770e-17
Identity = 39/61 (63.93%), Postives = 50/61 (81.97%), Query Frame = 1

Query:    7 QDFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            +DF RAL +V+PKFGA +QEL+ALY NG VPYG+ F+ + +TL RLVEQ R SE+TP+MSV
Sbjct:  479 EDFDRALGDVEPKFGAKSQELKALYRNGFVPYGESFDYLMSTLDRLVEQVRKSEKTPLMSV 539

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VM01_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.780e-16
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1

Query:   10 DFQRALT--EVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            DF++ALT  +VQPKFGA +QEL+ALY NG VPYG+ F+ + TT+ RLVEQ R SE+TP+MSV
Sbjct:  262 DFEKALTLDDVQPKFGAKSQELKALYRNGFVPYGESFDYLMTTMDRLVEQVRTSEKTPLMSV 323

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EPU7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.340e-16
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1

Query:   10 DFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            DF+RAL +VQPKFGA +QEL+ALY NG VPYG  F+ +  T+ RLVEQ R S++TP+MSV
Sbjct:  494 DFERALGDVQPKFGAKSQELKALYRNGFVPYGDAFDMLMGTMDRLVEQVRASDKTPLMSV 553

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Match: Vesicle-fusing (ATPase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CV29_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.180e-15
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1

Query:   10 DFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVEQTRLSERTPIMSV 189
            DF+ ALTE+QPKFGA  ++L+AL  NGIV YG  F +++TTL R VEQ R SERTP++SV
Sbjct:  407 DFEHALTEIQPKFGAPTEDLEALVTNGIVEYGPSFAEIQTTLTRCVEQIRTSERTPLLSV 466

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs76172.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Vesicle-fusing	1.460e-22	80.00	ATPase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K...	[more]
Vesicle-fusing	3.570e-19	70.49	ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=...	[more]
Vesicle-fusing	1.100e-17	65.57	ATPase n=1 Tax=Pseudo-nitzschia multistriata TaxID...	[more]
Vesicle-fusing	1.500e-17	66.67	ATPase n=2 Tax=Craspedostauros australis TaxID=148...	[more]
Vesicle-fusing	2.810e-17	63.93	ATPase n=1 Tax=Chaetoceros debilis TaxID=122233 Re...	[more]
Vesicle-fusing	3.830e-17	66.67	ATPase n=1 Tax=Helicotheca tamesis TaxID=374047 Re...	[more]
Vesicle-fusing	9.770e-17	63.93	ATPase n=1 Tax=Eucampia antarctica TaxID=49252 Rep...	[more]
Vesicle-fusing	1.780e-16	64.52	ATPase n=1 Tax=Pseudictyota dubia TaxID=2749911 Re...	[more]
Vesicle-fusing	6.340e-16	63.33	ATPase (Fragment) n=2 Tax=Ditylum brightwellii Tax...	[more]
Vesicle-fusing	1.180e-15	61.67	ATPase n=1 Tax=Florenciella parvula TaxID=236787 R...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs76172	contig	H-canaliculatus_M_contigs76172:105..293 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D8LTY3
Preferred name	NSF
PFAMs	AAA,CDC48_2,CDC48_N
Model size	189
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06027
KEGG TC	1.F.1.1
KEGG Pathway	ko04138,ko04721,ko04727,ko04962,map04138,map04721,map04727,map04962
Hectar predicted targeting category	other localisation
GOs	GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005794,GO:0005886,GO:0005911,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0008104,GO:0008150,GO:0009306,GO:0009506,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030054,GO:0032940,GO:0033036,GO:0040011,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046903,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055044,GO:0071702,GO:0071705,GO:0071944,GO:0098657
Exons	1
Evalue	9.57e-24
EggNOG OGs	COG0464@1\|root,KOG0741@2759\|Eukaryota
EC	3.6.4.6
Description	SNARE complex disassembly
Cds size	189
COG category	O
BRITE	ko00000,ko00001,ko01000,ko04131

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854099.8535748-CDS-H-canaliculatus_M_contigs76172:104..293	1696854099.8535748-CDS-H-canaliculatus_M_contigs76172:104..293	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs76172 105..293 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs76172.1.1	prot_H-canaliculatus_M_contigs76172.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs76172 105..293 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs76172:105..293+
coding sequence from alignment at H-canaliculatus_M_contigs76172:105..293+

protein sequence of mRNA_H-canaliculatus_M_contigs76172.1.1

>prot_H-canaliculatus_M_contigs76172.1.1 ID=prot_H-canaliculatus_M_contigs76172.1.1|Name=mRNA_H-canaliculatus_M_contigs76172.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=63bp
RRQDFQRALTEVQPKFGADNQELQALYANGIVPYGQEFEDVRTTLGRLVE
QTRLSERTPIMSV

mRNA from alignment at H-canaliculatus_M_contigs76172:105..293+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs76172.1.1 ID=mRNA_H-canaliculatus_M_contigs76172.1.1|Name=mRNA_H-canaliculatus_M_contigs76172.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=189bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76172:105..293+ (Hapterophycus canaliculatus Oshoro7m male)
CGTCGGCAGGACTTCCAAAGGGCGCTCACCGAAGTCCAGCCCAAGTTCGG
GGCGGACAACCAGGAGCTGCAGGCGCTGTACGCCAACGGCATCGTACCCT
ACGGCCAGGAGTTCGAGGACGTCCGGACGACCCTGGGGAGACTCGTCGAG
CAGACCAGGCTCAGCGAGAGGACGCCCATCATGTCGGTG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76172:105..293+

>mRNA_H-canaliculatus_M_contigs76172.1.1 ID=mRNA_H-canaliculatus_M_contigs76172.1.1|Name=mRNA_H-canaliculatus_M_contigs76172.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=189bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76172:105..293+ (Hapterophycus canaliculatus Oshoro7m male)
CGTCGGCAGGACTTCCAAAGGGCGCTCACCGAAGTCCAGCCCAAGTTCGG
GGCGGACAACCAGGAGCTGCAGGCGCTGTACGCCAACGGCATCGTACCCT
ACGGCCAGGAGTTCGAGGACGTCCGGACGACCCTGGGGAGACTCGTCGAG
CAGACCAGGCTCAGCGAGAGGACGCCCATCATGTCGGTG