mRNA_H-canaliculatus_M_contigs76161.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76161.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76161.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Glutamate (synthase (NADH/NADPH-dependent), C-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE0_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.600e-33
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YGADGVAPYMAYEAIAKMN+EGLVSAKAKEDYSD DLF+AYRKSVAKGILKVMSKMGISTLQSYKGAQV
Sbjct:  442 YGADGVAPYMAYEAIAKMNNEGLVSAKAKEDYSDQDLFSAYRKSVAKGILKVMSKMGISTLQSYKGAQV 510
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Glutamine (amidotransferase type-2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 7.640e-33
Identity = 65/69 (94.20%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YGADGVAPYMAYEAIAKMN+EGLVSAKAKEDYSD DLF+AYRKS+AKGILKVMSKMGISTLQSYKGAQV
Sbjct:  766 YGADGVAPYMAYEAIAKMNNEGLVSAKAKEDYSDQDLFSAYRKSIAKGILKVMSKMGISTLQSYKGAQV 834
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKF8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.990e-27
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YG DGV PY+AYEA++KMN+EGLV AK+K++Y+D  LFA YR + AKG+LKVMSKMGISTLQSYK AQ+
Sbjct:   18 YGCDGVCPYVAYEALSKMNAEGLVEAKSKQEYTDEQLFANYRNAAAKGLLKVMSKMGISTLQSYKAAQI 86
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHC3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 8.250e-25
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YG DGV P++AYEA+ KMNSEGL+ A++K+ +SD ++   YRK+  KGILKVMSKMGISTLQSYKGAQV
Sbjct:   34 YGCDGVCPHVAYEALLKMNSEGLMEARSKQTFSDDEIIHNYRKAACKGILKVMSKMGISTLQSYKGAQV 102
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZND1_TRICV)

HSP 1 Score: 105 bits (261), Expect = 9.490e-25
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YG DGV PY+AYEA+ KMN+EGL+ AKAK++Y+D  L + YRK+ AKG+LKVMSKMGISTLQSYKGAQV
Sbjct:   53 YGCDGVCPYVAYEALCKMNAEGLIEAKAKQEYTDDQLMSNYRKAAAKGLLKVMSKMGISTLQSYKGAQV 121
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PI44_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.600e-24
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YG DGV PYMAYEA+ KMN++GLV AK+K ++SD ++   YRK+V KG+LKVMSKMGISTLQSYKGAQV
Sbjct:  298 YGCDGVCPYMAYEALCKMNNDGLVEAKSKSEFSDDEIMTNYRKAVGKGLLKVMSKMGISTLQSYKGAQV 366
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Glutamine (amidotransferase type-2 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBI7_THAPS)

HSP 1 Score: 103 bits (256), Expect = 4.620e-24
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YG DGV PYMAYEA+ KMN +GLV AK+K++++D ++   YRK+VAKG+LKVMSKMGISTLQSYKGAQV
Sbjct:  691 YGCDGVCPYMAYEALCKMNHDGLVEAKSKKEFTDDEIMTNYRKAVAKGLLKVMSKMGISTLQSYKGAQV 759
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2D782_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.590e-24
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YG DGV PY+AYEA+ KMN +GLV AKAK +++D ++ A YRK+ AKG+LKVMSKMGISTLQSYKGAQV
Sbjct:  767 YGCDGVCPYVAYEALCKMNHDGLVEAKAKSEFTDDEIIANYRKAAAKGLLKVMSKMGISTLQSYKGAQV 835
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Hypothetical (protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QY48_9STRA)

HSP 1 Score: 102 bits (254), Expect = 8.610e-24
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YG DGV PY+AYEA+ KMN +GLV AKAK +++D ++ A YRK+ AKG+LKVMSKMGISTLQSYKGAQV
Sbjct:  767 YGCDGVCPYVAYEALCKMNHDGLVEAKAKSEFTDDEIIANYRKAAAKGLLKVMSKMGISTLQSYKGAQV 835
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YAK0_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.170e-23
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:    1 YGADGVAPYMAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGISTLQSYKGAQV 207
            YG DGV PYMAYE I KMN++G+V AKAKE+++D  +   YRK+ AKG+LKVMSKMGISTLQSYKGAQV
Sbjct:   14 YGCDGVCPYMAYEVICKMNADGMVEAKAKEEFTDEQVVQNYRKAAAKGLLKVMSKMGISTLQSYKGAQV 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76161.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Glutamate5.600e-3395.65synthase (NADH/NADPH-dependent), C-terminal part n... [more]
Glutamine7.640e-3394.20amidotransferase type-2 domain-containing protein ... [more]
Hypothetical3.990e-2771.01protein (Fragment) n=1 Tax=Minutocellus polymorphu... [more]
Hypothetical8.250e-2568.12protein (Fragment) n=1 Tax=Proboscia inermis TaxID... [more]
Hypothetical9.490e-2572.46protein (Fragment) n=1 Tax=Trieres chinensis TaxID... [more]
Hypothetical4.600e-2471.01protein n=2 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Glutamine4.620e-2471.01amidotransferase type-2 domain-containing protein ... [more]
Hypothetical8.590e-2471.01protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical8.610e-2471.01protein n=6 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical1.170e-2371.01protein n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76161contigH-canaliculatus_M_contigs76161:36..242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCE0
Preferred nameGLT1
PFAMsFer4_20,GATase_2,GXGXG,Glu_syn_central,Glu_synthase,Pyr_redox_2
Model size207
Max annot lvl2759|Eukaryota
KEGG rclassRC00006,RC00010,RC02799
KEGG koko:K00264,ko:K17792
KEGG TC3.A.8.1
KEGG ReactionR00093,R00114,R00248
KEGG Pathwayko00250,ko00910,ko01100,ko01110,ko01120,ko01130,ko01230,map00250,map00910,map01100,map01110,map01120,map01130,map01230
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015930,GO:0016040,GO:0016053,GO:0016491,GO:0016638,GO:0016639,GO:0017144,GO:0019676,GO:0019740,GO:0019752,GO:0030447,GO:0032502,GO:0036267,GO:0040007,GO:0042133,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045181,GO:0046394,GO:0046686,GO:0048589,GO:0050896,GO:0055114,GO:0060359,GO:0065007,GO:0065008,GO:0070783,GO:0071704,GO:0097054,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698
Exons1
Evalue2.58e-27
EggNOG OGsCOG0069@1|root,KOG0399@2759|Eukaryota
EC1.4.1.13,1.4.1.14
DescriptionL-glutamate biosynthetic process
Cds size180
COG categoryE
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854099.6339252-UTR-H-canaliculatus_M_contigs76161:35..621696854099.6339252-UTR-H-canaliculatus_M_contigs76161:35..62Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76161 36..62 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854099.6502993-CDS-H-canaliculatus_M_contigs76161:62..2421696854099.6502993-CDS-H-canaliculatus_M_contigs76161:62..242Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76161 63..242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76161.1.1prot_H-canaliculatus_M_contigs76161.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76161 63..242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76161.1.1

>prot_H-canaliculatus_M_contigs76161.1.1 ID=prot_H-canaliculatus_M_contigs76161.1.1|Name=mRNA_H-canaliculatus_M_contigs76161.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=60bp
MAYEAIAKMNSEGLVSAKAKEDYSDADLFAAYRKSVAKGILKVMSKMGIS
TLQSYKGAQV
back to top

mRNA from alignment at H-canaliculatus_M_contigs76161:36..242+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76161.1.1 ID=mRNA_H-canaliculatus_M_contigs76161.1.1|Name=mRNA_H-canaliculatus_M_contigs76161.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=207bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76161:36..242+ (Hapterophycus canaliculatus Oshoro7m male)
TACGGTGCCGACGGCGTGGCCCCCTACATGGCCTACGAGGCCATCGCCAA
GATGAACAGCGAGGGGCTCGTGTCCGCTAAGGCGAAGGAGGACTACAGCG
ACGCCGACCTCTTCGCGGCCTACCGCAAGAGCGTGGCCAAGGGCATCCTC
AAGGTCATGTCCAAGATGGGAATCTCCACCCTGCAGTCCTACAAGGGCGC
GCAGGTA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76161:36..242+

>mRNA_H-canaliculatus_M_contigs76161.1.1 ID=mRNA_H-canaliculatus_M_contigs76161.1.1|Name=mRNA_H-canaliculatus_M_contigs76161.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=180bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76161:36..242+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCTACGAGGCCATCGCCAAGATGAACAGCGAGGGGCTCGTGTCCGC
TAAGGCGAAGGAGGACTACAGCGACGCCGACCTCTTCGCGGCCTACCGCA
AGAGCGTGGCCAAGGGCATCCTCAAGGTCATGTCCAAGATGGGAATCTCC
ACCCTGCAGTCCTACAAGGGCGCGCAGGTA
back to top