mRNA_H-canaliculatus_M_contigs76120.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76120.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76120.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76120.1.1 vs.
Match: CRTAC1 (family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521H844_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 25/47 (53.19%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:   58 ATDMRFSDQTQAAGLSLIHKSTINPRSGPMPAGGAVGDFNGDGYPDL 198
            +  + FSDQT AAGL+  H         PM AGGAVGDF+ DG+PDL
Sbjct:   22 SAQVSFSDQTAAAGLTHTHTLDFPNFGNPMVAGGAVGDFDRDGWPDL 68
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76120.1.1 vs.
Match: CRTAC1 (family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V7MJJ5_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 5.180e-5
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 1 
Query:   73 FSDQTQAAGLSLIHKSTINPRSGPMPAGGAVGDFNGDGYPDL 198
            FSDQT  AG+++ H       + PM AGGA GDFN DG+PDL
Sbjct:   26 FSDQTIPAGVAMTHMEDPALMANPMIAGGAAGDFNRDGWPDL 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76120.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
CRTAC11.080e-553.19family protein n=1 Tax=Planctomycetes bacterium Ta... [more]
CRTAC15.180e-554.76family protein n=1 Tax=Planctomycetes bacterium Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76120contigH-canaliculatus_M_contigs76120:2..199 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size198
Hectar predicted targeting categorysignal peptide
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854099.2860122-CDS-H-canaliculatus_M_contigs76120:1..1991696854099.2860122-CDS-H-canaliculatus_M_contigs76120:1..199Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76120 2..199 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76120.1.1prot_H-canaliculatus_M_contigs76120.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76120 2..199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76120.1.1

>prot_H-canaliculatus_M_contigs76120.1.1 ID=prot_H-canaliculatus_M_contigs76120.1.1|Name=mRNA_H-canaliculatus_M_contigs76120.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=66bp
MKVILPLAIVVIAVSPQLGATDMRFSDQTQAAGLSLIHKSTINPRSGPMP
AGGAVGDFNGDGYPDL
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mRNA from alignment at H-canaliculatus_M_contigs76120:2..199-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76120.1.1 ID=mRNA_H-canaliculatus_M_contigs76120.1.1|Name=mRNA_H-canaliculatus_M_contigs76120.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76120:2..199- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAAGTAATACTTCCCCTGGCTATCGTGGTGATAGCGGTATCGCCACA
GCTTGGTGCAACGGATATGCGCTTTTCCGATCAGACACAAGCAGCAGGCC
TGTCATTAATCCACAAGTCGACAATTAATCCTCGGTCCGGGCCAATGCCT
GCAGGCGGTGCTGTTGGCGATTTTAACGGCGATGGTTACCCTGACCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76120:2..199-

>mRNA_H-canaliculatus_M_contigs76120.1.1 ID=mRNA_H-canaliculatus_M_contigs76120.1.1|Name=mRNA_H-canaliculatus_M_contigs76120.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76120:2..199- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAAGTAATACTTCCCCTGGCTATCGTGGTGATAGCGGTATCGCCACA
GCTTGGTGCAACGGATATGCGCTTTTCCGATCAGACACAAGCAGCAGGCC
TGTCATTAATCCACAAGTCGACAATTAATCCTCGGTCCGGGCCAATGCCT
GCAGGCGGTGCTGTTGGCGATTTTAACGGCGATGGTTACCCTGACCTG
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