mRNA_H-canaliculatus_M_contigs76095.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs76095.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs76095.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 7.560e-25
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1

Query:    4 QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ
Sbjct: 1022 QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 1069

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BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6G4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.170e-10
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1

Query:    1 TQGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            TQG+LA  + +L+N LWS TKK+++P  F+N +AKFN  F   DQHDAQ
Sbjct:  687 TQGKLAVAFGNLLNVLWSTTKKSIAPVQFRNALAKFNQHFDNDDQHDAQ 735

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BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: Ubiquitin-specific (protease, putative n=3 Tax=Phytophthora TaxID=4783 RepID=D0N6J9_PHYIT)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-9
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1

Query:    4 QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            QG+LA VY  L  D+W   +K++SP++FK  I KFN++F G+DQ DAQ
Sbjct: 1009 QGKLAEVYGKLAEDMWCVKQKSISPRNFKKSIGKFNEVFRGNDQQDAQ 1056

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=4 Tax=Phytophthora TaxID=4783 RepID=G4YVG2_PHYSP)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-9
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1

Query:    4 QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            QG+LA VY  L  D+W   +K++SP++FK  I KFN++F G+DQ DAQ
Sbjct: 1022 QGKLAEVYGKLAEDMWCVKQKSISPRNFKKSIGKFNEVFRGNDQQDAQ 1069

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: Uncharacterized (protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2PI00_PHYPN)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-9
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1

Query:    4 QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            QG+LA VY  L  D+W   +K++SP++FK  I KFN++F G+DQ DAQ
Sbjct: 1066 QGKLAEVYGKLAEDMWCVKQKSISPRNFKKSIGKFNEVFRGNDQQDAQ 1113

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIC4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-9
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1

Query:    4 QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            QG+LA VY  L  D+W   +K++SP++FK  I KFN++F G+DQ DAQ
Sbjct: 1064 QGKLAEVYGKLAEDMWCVKQKSISPRNFKKSIGKFNEVFRGNDQQDAQ 1111

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4F802_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-9
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1

Query:    4 QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            QG+LA VY  L  D+W   +K++SP++FK  I KFN++F G+DQ DAQ
Sbjct: 1068 QGKLAEVYGKLAEDMWCVKQKSISPRNFKKSIGKFNEVFRGNDQQDAQ 1115

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J3P2_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.090e-9
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1

Query:    4 QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            QG+LA VY  L  D+W   +K++SP++FK  I KFN++F G+DQ DAQ
Sbjct: 1946 QGKLAEVYGKLAEDMWCVKQKSISPRNFKKSIGKFNEVFRGNDQQDAQ 1993

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: USP (domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B6T4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.550e-9
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1

Query:    1 TQGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            +QG+LA  + +L+N LWS TKK+++P  F+N +AKFN  F   DQHDAQ
Sbjct:   38 SQGKLAVAFGNLLNVLWSTTKKSIAPVQFRNALAKFNQHFDNDDQHDAQ 86

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G8P2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.910e-9
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1

Query:    4 QGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ 147
            QG+LA VY  L  D+W    K++SP++FK  I KFN++F G+DQ DAQ
Sbjct:  947 QGKLAEVYGKLAEDMWCVKAKSISPRNFKKSIGKFNEVFRGNDQQDAQ 994

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs76095.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 19


Match Name	E-value	Identity	Description
Uncharacterized	7.560e-25	100.00	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	8.170e-10	55.10	protein n=2 Tax=Aphanomyces invadans TaxID=157072 ...	[more]
Ubiquitin-specific	2.090e-9	52.08	protease, putative n=3 Tax=Phytophthora TaxID=4783...	[more]
Uncharacterized	2.090e-9	52.08	protein (Fragment) n=4 Tax=Phytophthora TaxID=4783...	[more]
Uncharacterized	2.090e-9	52.08	protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2P...	[more]
Uncharacterized	2.090e-9	52.08	protein n=2 Tax=Peronospora effusa TaxID=542832 Re...	[more]
Uncharacterized	2.090e-9	52.08	protein n=2 Tax=Phytophthora rubi TaxID=129364 Rep...	[more]
Uncharacterized	2.090e-9	52.08	protein n=1 Tax=Phytophthora aleatoria TaxID=24960...	[more]
USP	2.550e-9	53.06	domain-containing protein n=1 Tax=Aphanomyces inva...	[more]
Uncharacterized	3.910e-9	52.08	protein n=4 Tax=Phytophthora kernoviae TaxID=32545...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs76095	contig	H-canaliculatus_M_contigs76095:289..435 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	157072.XP_008870206.1
PFAMs	DUSP,UCH
Model size	147
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11837
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Evalue	1.34e-10
EggNOG OGs	COG5560@1\|root,KOG1870@2759\|Eukaryota
EC	3.4.19.12
Description	ubiquitinyl hydrolase activity
Cds size	147
COG category	O
BRITE	ko00000,ko01000,ko01002,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854098.7257776-CDS-H-canaliculatus_M_contigs76095:288..435	1696854098.7257776-CDS-H-canaliculatus_M_contigs76095:288..435	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs76095 289..435 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs76095.1.1	prot_H-canaliculatus_M_contigs76095.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs76095 289..435 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs76095:289..435+
coding sequence from alignment at H-canaliculatus_M_contigs76095:289..435+

protein sequence of mRNA_H-canaliculatus_M_contigs76095.1.1

>prot_H-canaliculatus_M_contigs76095.1.1 ID=prot_H-canaliculatus_M_contigs76095.1.1|Name=mRNA_H-canaliculatus_M_contigs76095.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=49bp
TQGRLAHVYADLVNDLWSPTKKTVSPKSFKNEIAKFNDLFGGHDQHDAQ

mRNA from alignment at H-canaliculatus_M_contigs76095:289..435+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs76095.1.1 ID=mRNA_H-canaliculatus_M_contigs76095.1.1|Name=mRNA_H-canaliculatus_M_contigs76095.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=147bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76095:289..435+ (Hapterophycus canaliculatus Oshoro7m male)
ACACAGGGCCGGCTTGCCCACGTGTACGCAGACCTGGTGAACGACCTGTG
GAGCCCGACGAAGAAGACGGTGTCGCCGAAGTCTTTCAAGAACGAGATCG
CCAAGTTCAATGACCTCTTCGGGGGCCACGACCAGCACGATGCGCAG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76095:289..435+

>mRNA_H-canaliculatus_M_contigs76095.1.1 ID=mRNA_H-canaliculatus_M_contigs76095.1.1|Name=mRNA_H-canaliculatus_M_contigs76095.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=147bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76095:289..435+ (Hapterophycus canaliculatus Oshoro7m male)
ACACAGGGCCGGCTTGCCCACGTGTACGCAGACCTGGTGAACGACCTGTG
GAGCCCGACGAAGAAGACGGTGTCGCCGAAGTCTTTCAAGAACGAGATCG
CCAAGTTCAATGACCTCTTCGGGGGCCACGACCAGCACGATGCGCAG