mRNA_H-canaliculatus_M_contigs7609.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7609.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7609.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C0_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 5.610e-63
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1
Query:    1 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA 333
            AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA
Sbjct:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKXXXXXXXXXXXXFKKSKKPKA 113          
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED0_9STRA)

HSP 1 Score: 152 bits (385), Expect = 7.500e-46
Identity = 74/88 (84.09%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKM 264
            AVGVPIKLLHEGEGH +T+EMKNGEIYRG L EAEDTMN F+T VTMT RDGRVSKLEQVYLRGSHIK ++LPD+LKNAPVFK VQKM
Sbjct:    6 AVGVPIKLLHEGEGHVITIEMKNGEIYRGRLMEAEDTMNSFITEVTMTARDGRVSKLEQVYLRGSHIKFIILPDLLKNAPVFKGVQKM 93          
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA)

HSP 1 Score: 140 bits (352), Expect = 7.250e-41
Identity = 63/89 (70.79%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 270
            +GVPI++LHEGEGH ++VE++NGEIYRG L EAEDTMNCF+  VTMT RDGRVSKLEQVY+RGS +KL++LP+VLK++P F  VQ MKK
Sbjct:    6 IGVPIRILHEGEGHTISVELRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKK 94          
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H3G1_HETAK)

HSP 1 Score: 136 bits (343), Expect = 1.600e-39
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 1
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQ 258
            +GVP+KLLHE EGH VT E+KNGEIYRG L+EAEDTMNC M+ VT T R+G+VSKLE VY+RGSH+KL++LPD+L+NAPVFK VQ
Sbjct:    6 IGVPVKLLHEAEGHVVTAELKNGEIYRGMLDEAEDTMNCAMSNVTFTARNGKVSKLESVYIRGSHVKLLILPDMLRNAPVFKKVQ 90          
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSP0_GLOUD)

HSP 1 Score: 135 bits (340), Expect = 4.870e-39
Identity = 61/89 (68.54%), Postives = 77/89 (86.52%), Query Frame = 1
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 270
            VGVPI LLHEGEG  VT+E+KNGEIYRGHL E+ED+MNC ++ V +T RDG+ +KLEQVY+RGSHIKL++LPD+LKN+P+F  VQ +KK
Sbjct:    5 VGVPIALLHEGEGRNVTIELKNGEIYRGHLEESEDSMNCQLSNVVLTQRDGQKAKLEQVYVRGSHIKLIILPDILKNSPLFSKVQALKK 93          
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Z6_AURAN)

HSP 1 Score: 132 bits (333), Expect = 5.490e-38
Identity = 63/95 (66.32%), Postives = 81/95 (85.26%), Query Frame = 1
Query:    1 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIK-----LVVLPDVLKNAPVFKPVQKMKK 270
            AVGVPIKLLHEGEGH VT+E+KNGEIYRGHL+E+E+TMNC +T V +T RDGRV+KLE VY+RGS IK      ++LPD+LK++PVF+ V+++KK
Sbjct:    7 AVGVPIKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLENVYIRGSQIKRERRAFMILPDLLKHSPVFEKVKELKK 101          
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LB96_9STRA)

HSP 1 Score: 132 bits (332), Expect = 9.060e-38
Identity = 58/89 (65.17%), Postives = 78/89 (87.64%), Query Frame = 1
Query:    4 VGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 270
            VGVP+ LLHEGEGH +T+E+KNGE+YRGHL E+ED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +KK
Sbjct:    5 VGVPLSLLHEGEGHQITLELKNGEVYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYVRGSQVKLFILPDMLQKSPLFKKVQALKK 93          
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZW3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.050e-37
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 1
Query:    1 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 270
            +VGVPI LLHEGEG  VTVE+KNGEIYRGHL E+ED+MNC M  V +T RDG+  KLEQVY+RGSHIKLV+LPDVLKN+P+   VQ +KK
Sbjct:    5 SVGVPIALLHEGEGRSVTVELKNGEIYRGHLLESEDSMNCQMRDVVLTQRDGQKRKLEQVYVRGSHIKLVILPDVLKNSPLLAKVQALKK 94          
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QL39_SAPDV)

HSP 1 Score: 132 bits (331), Expect = 1.110e-37
Identity = 57/90 (63.33%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    1 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 270
            ++GVP+ LLHEGEGH +T+E+KNGEIY+GHL EAED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK +Q +KK
Sbjct:    4 SLGVPLSLLHEGEGHTITLELKNGEIYKGHLMEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKIQALKK 93          
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Match: Small (nuclear ribonucleoprotein Sm D3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC26_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.110e-37
Identity = 58/90 (64.44%), Postives = 79/90 (87.78%), Query Frame = 1
Query:    1 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKK 270
            ++GVP+ LLHEGEGH +T+E+KNGEIY+GHL EAED+MNC +  VT+TGRDG++S+LEQVY+RGS +KL +LPD+L+ +P+FK VQ +KK
Sbjct:    4 SLGVPLSLLHEGEGHTITLELKNGEIYKGHLLEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKVQALKK 93          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7609.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Small5.610e-63100.00nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus... [more]
Small7.500e-4684.09nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema ... [more]
Small7.250e-4170.79nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochrom... [more]
Small1.600e-3972.94nuclear ribonucleoprotein Sm D3 n=1 Tax=Heterosigm... [more]
Small4.870e-3968.54nuclear ribonucleoprotein Sm D3 n=1 Tax=Globispora... [more]
Small5.490e-3866.32nuclear ribonucleoprotein Sm D3 n=1 Tax=Aureococcu... [more]
Small9.060e-3865.17nuclear ribonucleoprotein Sm D3 n=1 Tax=Aphanomyce... [more]
Small1.050e-3771.11nuclear ribonucleoprotein Sm D3 n=1 Tax=Pythium br... [more]
Small1.110e-3763.33nuclear ribonucleoprotein Sm D3 n=2 Tax=Saprolegni... [more]
Small1.110e-3764.44nuclear ribonucleoprotein Sm D3 n=1 Tax=Thraustoth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7609contigH-canaliculatus_M_contigs7609:2423..3445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog65071.PYU1_T007984
PFAMsLSM
Model size336
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.98e-40
EggNOG OGsCOG1958@1|root,KOG3172@2759|Eukaryota,1MHFN@121069|Pythiales
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein D3
Ec32 orthologEc-14_006960.1
DescriptionSmall nuclear ribonucleoprotein Sm D3. Source PGD
Cds size336
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854098.6734447-CDS-H-canaliculatus_M_contigs7609:2422..26251696854098.6734447-CDS-H-canaliculatus_M_contigs7609:2422..2625Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7609 2423..2625 -
1696854098.693637-CDS-H-canaliculatus_M_contigs7609:3312..34451696854098.693637-CDS-H-canaliculatus_M_contigs7609:3312..3445Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7609 3313..3445 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7609.2.1prot_H-canaliculatus_M_contigs7609.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7609 2423..3445 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7609.2.1

>prot_H-canaliculatus_M_contigs7609.2.1 ID=prot_H-canaliculatus_M_contigs7609.2.1|Name=mRNA_H-canaliculatus_M_contigs7609.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp
AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGR
DGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKMKKKDEEAGGGRG
GGFKKSKKPKA*
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mRNA from alignment at H-canaliculatus_M_contigs7609:2423..3445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7609.2.1 ID=mRNA_H-canaliculatus_M_contigs7609.2.1|Name=mRNA_H-canaliculatus_M_contigs7609.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7609:2423..3445- (Hapterophycus canaliculatus Oshoro7m male)
GCTGTGGGCGTTCCGATCAAGCTCCTCCATGAGGGTGAGGGTCACGGAGT GACCGTCGAGATGAAAAACGGGGAGATCTACAGGGGGCACTTAAATGAGG CGGAGGACACGATGAACTGCTTCATGACAGGAGGTGAGACTGGCACAAGG ACTGACCGTCTTTCATTCGAGCTGATCAGAGGATGAGACGAGATAACTTG CTTATGACGAGCGGTGAGGCCCGGACAAAAAGACTGCATTCGAACATTGT TTCCGTCACACGATTCACGCGTCGATTAATGGTCTTTCCCGTCCCAGTGA TCGACACGGTGCACACCATTCGGGCGCTGCAGGAGATATGCCGCAGCTTG TCATGCCCGCATGCCAGATTGTTTGCAAGTGGGATGCATAAGAGTCGCGG CGAATGCGGCTTGCCGAAACACGCTGGTACCGACCAGTATCGGTATGTGC AAGCTTTGATTCGTTGTACCTGTCGATACGGCCAAGACCTACCGGTGTGC GTAAAAGCCCCGTGTCAACACAGATATGGAGTGAACGTGCAAGGCTCTTC ATCTTCAGGGCCAAGACCGCGCGGCACCACTGGGCTGCAGCAGATATGGC GGCTCTCGCTGATGACCCATTTCCCCAATCGTCGTGTCAAGAGCACTAGG ACTGAGGGTCCCGACGCAGAATTGCTTGAGCTCAGAGTTTATCCTGAATC CACTCGATAAATATACGGCAAGACTTCTTCCTACACACTAACCTTAGCGA CCACCTCCCCTGCTTTTTCTCGGACTACACGTTCGTCCCTGCTGCTGTGC TGTGCTGTGCTGTGCGGCAGTCACGATGACAGGAAGAGATGGGCGTGTGA GTAAGCTGGAGCAGGTCTACCTTCGCGGTAGCCACATCAAGCTGGTAGTA TTGCCCGACGTACTCAAGAACGCACCGGTATTCAAACCTGTACAAAAGAT GAAGAAGAAGGACGAGGAGGCTGGGGGGGGGCGAGGAGGGGGCTTCAAGA AATCCAAAAAGCCCAAGGCATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7609:2423..3445-

>mRNA_H-canaliculatus_M_contigs7609.2.1 ID=mRNA_H-canaliculatus_M_contigs7609.2.1|Name=mRNA_H-canaliculatus_M_contigs7609.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7609:2423..3445- (Hapterophycus canaliculatus Oshoro7m male)
GCTGTGGGCGTTCCGATCAAGCTCCTCCATGAGGGTGAGGGTCACGGAGT
GACCGTCGAGATGAAAAACGGGGAGATCTACAGGGGGCACTTAAATGAGG
CGGAGGACACGATGAACTGCTTCATGACAGGAGTCACGATGACAGGAAGA
GATGGGCGTGTGAGTAAGCTGGAGCAGGTCTACCTTCGCGGTAGCCACAT
CAAGCTGGTAGTATTGCCCGACGTACTCAAGAACGCACCGGTATTCAAAC
CTGTACAAAAGATGAAGAAGAAGGACGAGGAGGCTGGGGGGGGGCGAGGA
GGGGGCTTCAAGAAATCCAAAAAGCCCAAGGCATAG
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