mRNA_H-canaliculatus_M_contigs76088.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76088.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76088.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: HYR (domain-containing protein n=1 Tax=Ulvibacter litoralis TaxID=227084 RepID=A0A1G7FWW1_9FLAO)

HSP 1 Score: 82.8 bits (203), Expect = 3.160e-15
Identity = 46/111 (41.44%), Postives = 74/111 (66.67%), Query Frame = 1
Query:  181 VLVGSQTDGFVTPNVSVDSTGNLVLEDRDGARNDNLTISLEGSNYRISDSSNELQPGLGTFLAANGD-VLISAASVTGAIVINGNSGDDVLTLDFAGGNPIPAGGISFDGG 510
            +++         P V +D++ NL++ D D  R+D + I ++G+NYRISD++N++  GLGT    +GD +L+  ASVTG I +N  +GDDVLT+DF+GGN   +  I+++GG
Sbjct:  368 IIISDPLMACTLPTVFIDASNNLIIRDVDDGRDDAVQIVVDGANYRISDANNDIFAGLGT--TQDGDEILVPIASVTGDIQVNTLAGDDVLTVDFSGGNFTDS--INYNGG 474          
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: Uncharacterized (protein n=4 Tax=Rosistilla TaxID=2795779 RepID=A0A518J188_9BACT)

HSP 1 Score: 82.4 bits (202), Expect = 4.380e-15
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  220 NVSVDSTGNLVLEDRDGARNDNLTISLEGSNYRISDSSNELQPGLGTFLAANGDVLISAASVTGAIVINGNSGDDVLTLDFAGGNPIPAGGISFDGG 510
            +V+VD  GNL+ +D DG+RND+LTI +EGSNYRISD +N L  G GT      D+L+  A VTG I  N   G+D L+++F GGN +    I F GG
Sbjct:  368 SVTVDGAGNLIYDDADGSRNDDLTIVVEGSNYRISDPANALLAGPGT-TQDGADILVPIADVTGEIRFNTRGGNDSLSVNFNGGNIVRP--IVFHGG 461          
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: Hemolysin, (chromosomal n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YN67_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 2.780e-14
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 1
Query:  220 NVSVDSTGNLVLEDRDGAR-NDNLTISLEGSNYRISDSSNELQPGLGTFLAANGDVLISAASVTGAIVINGNSGDDVLTLDFAGGNPIPAGGISFDGG 510
            +VS+D +GNL++ D DGA  NDNLT  + G++  ISD +N L  G G        V +  +++TG+I I   +G+D++TLD  GG+ IPA G+SFDGG
Sbjct:  380 DVSIDGSGNLLVNDVDGANSNDNLTFVVSGTDLIISDPNNSLDAGAGATQLTPFSVSVPLSAITGSIQITTQAGNDLVTLDLTGGDFIPAAGLSFDGG 477          
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: Putative (outer membrane protein PmpB n=1 Tax=Rhodopirellula pilleata TaxID=2714738 RepID=A0A5C6A552_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 1.300e-13
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  220 NVSVDSTGNLVLEDRDGARNDNLTISLEGSNYRISDSSNELQPGLGTFLAANGDVLISAASVTGAIVINGNSGDDVLTLDFAGGN-PIPAGGISFDGG 510
            +V VD+ GNL++ED D +++D +T+ ++G+NYRISD  N +  G G        +L+  AS+TG I ING+ GDD L +D  GG   +P   ISF+GG
Sbjct: 1348 DVQVDAGGNLIIEDSDSSQDDQITLVIDGTNYRISDPVNGMTGGPGAIQDGPNAILVPIASITGEIRINGSGGDDTLVVDQNGGRFTVP---ISFNGG 1442          
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: Phage (Tail Collar domain protein (Fragment) n=2 Tax=Rhodopirellula sp. SWK7 TaxID=595460 RepID=M5SZD1_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 8.200e-13
Identity = 47/121 (38.84%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  136 NGTFFARXXXXXXXRV-LVGSQTDGFVTP--------NVSVDSTGNLVLEDRDGARNDNLTISLEGSNYRISDSSNELQPGLGTFLAANGDVLISAASVTGAIVINGNSGDDVLTLDFAGG 471
            +GT FAR          + G+  DG V          N SVD+ GNL+++D DG+RND++TI ++G NYRI+D  N    G G        +L+  A+VTG I + G  GDD LT++  GG
Sbjct: 1969 SGTTFARFRISTAGVAGVTGAAPDGEVEDYQVTVLNVNGSVDTAGNLIIQDNDGSRNDDITIEIDGPNYRITDPVNGFVAGSGAAQDGPNSMLVPIANVTGEIRVIGGGGDDSLTINNNGG 2089          
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Patiriisocius marinus TaxID=1397112 RepID=A0A5J4J329_9FLAO)

HSP 1 Score: 73.6 bits (179), Expect = 5.090e-12
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  217 PNVSVDSTGNLVLEDRDGARNDNLTISLEGSNYRISDSSNELQPGLGTFLAANGDVLISAASVTGAIVINGNSGDDVLTLDFAGGNPIPAGGISFDGG 510
            P+  + S+G+L+  D +  R+DNLTI + G+NYRI+D SN L  G+G        V ++  SVTG I IN N GDD LT DF+GGN      I++DGG
Sbjct:  393 PHNVIVSSGDLIFTDNND-RDDNLTIVINGANYRITDPSNSLIAGMGATQIDANTVDVTITSVTGDITINTNGGDDSLTTDFSGGNFQDI--INYDGG 487          
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: Calcium-binding (protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7PCT0_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 1.960e-10
Identity = 58/153 (37.91%), Postives = 72/153 (47.06%), Query Frame = 1
Query:   10 DAGAVTFGNGTTGVTGSISAVNSAIGLSANSALSFTVAVDDSNGTFFARXXXXXXXRVLVGSQTDGFVTPNVSVDSTGNLVLEDRDGARNDNLTISLEGSNYRISDSSNELQPGLGTFLAANG---DVLISAASVTGAIVINGNSGDDVLTLD 459
            DAGAVT G+GTTG+TG +S VNS IG S++S L   V  D  N  +F R       RVLV  Q   FV P     +     L       ND +T+  +    +I+               ANG   D    AASV  A+ I+G  GDD LTLD
Sbjct:  672 DAGAVTLGSGTTGITGPVSPVNSTIGQSSDSLLDINVVSDPVNSNYFIRFLNEGSGRVLVQPQL--FVPPPPVTFAIAGNKLNVTGSDENDTITVLNDAGLIKIN---------------ANGVIIDTTALAASVQ-AVTISGMGGDDTLTLD 806          
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7D8UC59_9PLAN)

HSP 1 Score: 68.2 bits (165), Expect = 3.750e-10
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  223 VSVDSTGNLVLEDRDG-ARNDNLTISLEGSNYRISDSSNELQPGLGTFLAANGDVLISAASVTGAIVINGNSGDDVLTLDFAGGNPIPAGGISFDGG 510
            V +D +GNL++ D D   ++D L +  +     I D++N +Q G GT    +  V +   +++GAI ++   GDD LT+DF+GGNP+P GG+SF  G
Sbjct:  369 VEIDGSGNLLISDTDDDGKDDALLVYRQQGLLVIHDATNRIQAGPGTSQFDDHTVQVDLLAISGAIQVDTAGGDDSLTIDFSGGNPLPTGGLSFAAG 465          
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: Bifunctional (hemolysin/adenylate cyclase n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YDU2_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 1.780e-9
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  241 GNLVLEDRDGARNDNLTISLEGSNYRISDSSNELQPGLGTFLAANGDVLISAASVTGAIVINGNSGDDVLTLDFAGGNPIPAGGISFDGG 510
            GN+++ D  G  +++LTIS +G   RISD    L    G        V I A  +TG +++N   G+D LT+DF GGNP+P GGI F GG
Sbjct: 2884 GNVIVTDTAGTTSNDLTISRDGVYIRISDPYFPLIALAGAIQIDAHTVDILADDITGVLLVNAADGNDTLTIDFNGGNPLPVGGIDFAGG 2973          
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847H0P5_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 4.330e-9
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  241 GNLVLEDRDGARNDNLTISLEGSNYRISDSSNELQ--PGLGTFLAANGDVLISAASVTGAIVINGNSGDDVLTLDFAGGNPIPAGGISFDGGVG 516
            G L + D  G  N  LT+S   +N  I+D++ +    P  GT    N  + I   S+TG++V+    GDD LT+ FAGGNPIPA G+S+DGG+G
Sbjct: 1163 GTLTVADGAGVPNA-LTVSRVDANLVITDAAEQFASAPAGGTLSNNNQTLTIPLTSITGSLVLELGGGDDELTVGFAGGNPIPAAGLSYDGGLG 1255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76088.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
HYR3.160e-1541.44domain-containing protein n=1 Tax=Ulvibacter litor... [more]
Uncharacterized4.380e-1549.48protein n=4 Tax=Rosistilla TaxID=2795779 RepID=A0A... [more]
Hemolysin,2.780e-1444.90chromosomal n=1 Tax=Anatilimnocola aggregata TaxID... [more]
Putative1.300e-1343.88outer membrane protein PmpB n=1 Tax=Rhodopirellula... [more]
Phage8.200e-1338.84Tail Collar domain protein (Fragment) n=2 Tax=Rhod... [more]
Uncharacterized5.090e-1245.92protein n=1 Tax=Patiriisocius marinus TaxID=139711... [more]
Calcium-binding1.960e-1037.91protein (Fragment) n=1 Tax=Planctomycetes bacteriu... [more]
Uncharacterized3.750e-1038.14protein n=1 Tax=Planctomycetaceae bacterium TaxID=... [more]
Bifunctional1.780e-942.22hemolysin/adenylate cyclase n=1 Tax=Anatilimnocola... [more]
Uncharacterized4.330e-942.55protein (Fragment) n=1 Tax=Candidatus Anammoximicr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76088contigH-canaliculatus_M_contigs76088:2..520 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog595460.RRSWK_04959
PFAMsCalx-beta,FG-GAP,PA14,PATR
Model size519
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.34e-13
EggNOG OGsCOG1361@1|root,COG1404@1|root,COG1572@1|root,COG2133@1|root,COG2931@1|root,COG3210@1|root,COG4625@1|root,COG4675@1|root,COG1361@2|Bacteria,COG1404@2|Bacteria,COG1572@2|Bacteria,COG2133@2|Bacteria,COG2931@2|Bacteria,COG3210@2|Bacteria,COG4625@2|Bacteria,COG4675@2|Bacteria,2IYDY@203682|Planctomycetes
DescriptionTIGRFAM autotransporter-associated beta strand repeat protein
Cds size519
COG categoryQU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854098.6287324-CDS-H-canaliculatus_M_contigs76088:1..5201696854098.6287324-CDS-H-canaliculatus_M_contigs76088:1..520Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76088 2..520 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76088.1.1prot_H-canaliculatus_M_contigs76088.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76088 2..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76088.1.1

>prot_H-canaliculatus_M_contigs76088.1.1 ID=prot_H-canaliculatus_M_contigs76088.1.1|Name=mRNA_H-canaliculatus_M_contigs76088.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=173bp
AATDAGAVTFGNGTTGVTGSISAVNSAIGLSANSALSFTVAVDDSNGTFF
ARFVDDGNGRVLVGSQTDGFVTPNVSVDSTGNLVLEDRDGARNDNLTISL
EGSNYRISDSSNELQPGLGTFLAANGDVLISAASVTGAIVINGNSGDDVL
TLDFAGGNPIPAGGISFDGGVGV
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mRNA from alignment at H-canaliculatus_M_contigs76088:2..520+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76088.1.1 ID=mRNA_H-canaliculatus_M_contigs76088.1.1|Name=mRNA_H-canaliculatus_M_contigs76088.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76088:2..520+ (Hapterophycus canaliculatus Oshoro7m male)
GCCGCCACGGACGCCGGAGCGGTGACGTTTGGTAACGGGACCACCGGCGT GACGGGATCGATTTCAGCCGTGAACAGCGCGATTGGTCTGTCAGCCAATT CAGCACTTTCCTTCACTGTTGCTGTCGACGATTCGAACGGCACTTTCTTT GCTCGTTTTGTCGACGATGGAAATGGCCGAGTGCTCGTCGGTTCGCAAAC CGATGGATTTGTGACTCCCAATGTCAGTGTCGACTCTACCGGAAACCTCG TTCTCGAAGACCGTGATGGTGCTCGCAACGACAACTTAACGATTTCCCTT GAAGGCTCCAATTATCGCATCAGTGATTCGAGCAACGAGTTGCAACCAGG ACTGGGAACCTTTCTCGCTGCTAACGGTGACGTTCTGATCTCGGCGGCCA GCGTTACCGGGGCAATTGTGATCAATGGGAATAGTGGTGACGATGTACTG ACGCTCGATTTCGCTGGTGGCAATCCGATTCCCGCGGGCGGTATTTCTTT CGATGGCGGTGTGGGCGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76088:2..520+

>mRNA_H-canaliculatus_M_contigs76088.1.1 ID=mRNA_H-canaliculatus_M_contigs76088.1.1|Name=mRNA_H-canaliculatus_M_contigs76088.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=519bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76088:2..520+ (Hapterophycus canaliculatus Oshoro7m male)
GCCGCCACGGACGCCGGAGCGGTGACGTTTGGTAACGGGACCACCGGCGT
GACGGGATCGATTTCAGCCGTGAACAGCGCGATTGGTCTGTCAGCCAATT
CAGCACTTTCCTTCACTGTTGCTGTCGACGATTCGAACGGCACTTTCTTT
GCTCGTTTTGTCGACGATGGAAATGGCCGAGTGCTCGTCGGTTCGCAAAC
CGATGGATTTGTGACTCCCAATGTCAGTGTCGACTCTACCGGAAACCTCG
TTCTCGAAGACCGTGATGGTGCTCGCAACGACAACTTAACGATTTCCCTT
GAAGGCTCCAATTATCGCATCAGTGATTCGAGCAACGAGTTGCAACCAGG
ACTGGGAACCTTTCTCGCTGCTAACGGTGACGTTCTGATCTCGGCGGCCA
GCGTTACCGGGGCAATTGTGATCAATGGGAATAGTGGTGACGATGTACTG
ACGCTCGATTTCGCTGGTGGCAATCCGATTCCCGCGGGCGGTATTTCTTT
CGATGGCGGTGTGGGCGTC
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