mRNA_H-canaliculatus_M_contigs76077.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76077.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76077.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.130e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG
Sbjct:  565 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 615
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BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.760e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAHVTSD+E  P++RLC D+GVEDV  LSG E+N   + LVF+NG+I+G
Sbjct:  537 ALLAHVTSDEEPEPLVRLCMDMGVEDVTALSGAEINAPDTYLVFMNGAIIG 587
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BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 70.5 bits (171), Expect = 6.760e-13
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAHVT+D+E+ P+ +LC+DLG+EDV  LSG E+N   + LVFLNG IVG
Sbjct:  535 ALLAHVTTDEESEPIRKLCFDLGIEDVTLLSGAEINASSNYLVFLNGLIVG 585
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BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EQY7_TRICV)

HSP 1 Score: 66.2 bits (160), Expect = 8.920e-13
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAH+T+D++T P+ RLC DLGV DV  L+G E+N   + LVFLNG +VG
Sbjct:   26 ALLAHITTDEDTAPIDRLCRDLGVTDVTMLTGNEINAMGTYLVFLNGLVVG 76
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BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE3_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.690e-12
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAHVTSD E  PVLR C DLGVEDVA LSG EV+   + LVFLNG ++G
Sbjct:  123 ALLAHVTSDAEERPVLRACLDLGVEDVALLSGAEVHAGQAFLVFLNGLLIG 173
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BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W253_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.210e-12
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAH+T+D++TGP+ RLC DLG +DVA ++G E++   + LV LNG +VG
Sbjct:   46 ALLAHITTDEDTGPIERLCRDLGTQDVAAMTGNEIHSEGTYLVLLNGLVVG 96
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BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSN6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.360e-12
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAH+T+D++T P+ RLC DLGVEDV RLSG E+N + + LV LNG I+G
Sbjct:  615 ALLAHITTDEDTQPIERLCRDLGVEDVLRLSGHEINSQQAYLVLLNGLILG 665
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTR5_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.540e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAH+T+D++T P+ RLC DLGVEDV  LSG E+N + + LV LNG I+G
Sbjct:   23 ALLAHITTDEDTAPIERLCLDLGVEDVKMLSGNEINAKGAYLVLLNGLILG 73
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BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.220e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAH+T+D++T P+ RLC DLGVEDV RLSG E+N   + LV LNG I+G
Sbjct:  562 ALLAHITTDEDTQPIERLCRDLGVEDVLRLSGHEINSHQAYLVLLNGLILG 612
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BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Match: DNA-directed (RNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6C3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.180e-12
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIVG 153
            ALLAH+T+D++T P+ RL  DLGVEDV RL+G E++ R   LVFLNG I+G
Sbjct:  106 ALLAHITTDEDTQPIRRLSRDLGVEDVKRLTGNEIHSRGGFLVFLNGLILG 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76077.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
DNA-directed1.130e-24100.00RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
DNA-directed6.760e-1362.75RNA polymerase subunit beta n=1 Tax=Tribonema minu... [more]
DNA-directed6.760e-1362.75RNA polymerase subunit beta n=3 Tax=Monodopsidacea... [more]
DNA-directed8.920e-1358.82RNA polymerase (Fragment) n=1 Tax=Trieres chinensi... [more]
DNA-directed1.690e-1268.63RNA polymerase (Fragment) n=1 Tax=Heterosigma akas... [more]
DNA-directed2.210e-1254.90RNA polymerase (Fragment) n=1 Tax=Pseudictyota dub... [more]
DNA-directed2.360e-1262.75RNA polymerase subunit beta n=1 Tax=Pseudo-nitzsch... [more]
DNA-directed2.540e-1260.78RNA polymerase (Fragment) n=1 Tax=Attheya septentr... [more]
DNA-directed3.220e-1262.75RNA polymerase subunit beta n=1 Tax=Fragilariopsis... [more]
DNA-directed7.180e-1260.78RNA polymerase (Fragment) n=1 Tax=Grammatophora oc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76077contigH-canaliculatus_M_contigs76077:148..300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36331.EPrPI00000019085
PFAMsRNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_4,RNA_pol_Rpb2_5,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Model size153
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.7e-12
EggNOG OGsCOG0085@1|root,KOG0215@2759|Eukaryota,1MDZF@121069|Pythiales
DescriptionDNA-directed RNA polymerase
Cds size153
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854098.4943402-CDS-H-canaliculatus_M_contigs76077:147..3001696854098.4943402-CDS-H-canaliculatus_M_contigs76077:147..300Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76077 148..300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76077.1.1prot_H-canaliculatus_M_contigs76077.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76077 148..300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76077.1.1

>prot_H-canaliculatus_M_contigs76077.1.1 ID=prot_H-canaliculatus_M_contigs76077.1.1|Name=mRNA_H-canaliculatus_M_contigs76077.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=51bp
ALLAHVTSDQETGPVLRLCYDLGVEDVARLSGGEVNGRHSSLVFLNGSIV
G
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mRNA from alignment at H-canaliculatus_M_contigs76077:148..300-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76077.1.1 ID=mRNA_H-canaliculatus_M_contigs76077.1.1|Name=mRNA_H-canaliculatus_M_contigs76077.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76077:148..300- (Hapterophycus canaliculatus Oshoro7m male)
GCGCTTCTGGCGCACGTCACTTCGGACCAAGAAACCGGGCCGGTGCTGCG
GCTTTGCTACGACCTGGGCGTGGAGGATGTCGCCCGGCTCTCCGGCGGAG
AGGTCAACGGTCGCCACTCTTCCCTCGTCTTCCTCAACGGCTCTATCGTT
GGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76077:148..300-

>mRNA_H-canaliculatus_M_contigs76077.1.1 ID=mRNA_H-canaliculatus_M_contigs76077.1.1|Name=mRNA_H-canaliculatus_M_contigs76077.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=153bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76077:148..300- (Hapterophycus canaliculatus Oshoro7m male)
GCGCTTCTGGCGCACGTCACTTCGGACCAAGAAACCGGGCCGGTGCTGCG
GCTTTGCTACGACCTGGGCGTGGAGGATGTCGCCCGGCTCTCCGGCGGAG
AGGTCAACGGTCGCCACTCTTCCCTCGTCTTCCTCAACGGCTCTATCGTT
GGC
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