mRNA_H-canaliculatus_M_contigs7606.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7606.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7606.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA (polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM6_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.160e-47
Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKVR 336
            M +   RQ+L   LGRAPT  E A++  +TV   EESL+ G  AKKTMVEANMRMVISIARKY+H GVPLTDLIQEGSLGL+RAVEKFDPERGFKLSTYSAWWIQQ+IFKVR
Sbjct:   39 MGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEESLKVGGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFKVR 150          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA_pol_sigma70 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBV0_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.000e-44
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 1
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFK 330
            M +  TRQ+L  +LGRAPT  E A++C  TV   EESL+    AKKTMVEANMRMVISIARKY+H GVPLTDLIQEGSLGL+RAVEKFDPERGFKLSTYSAWWIQQ+IFK
Sbjct:  297 MGHVGTRQELAARLGRAPTFSEWAESCRTTVVELEESLKVCGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFK 406          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPT1_PHATC)

HSP 1 Score: 119 bits (299), Expect = 1.630e-30
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1
Query:   28 LGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFK 330
            L  +L R PT +E A ACG T + F E +    EAK+ MV++NMR+V+SIARKY + GV L DL+QEGSLGL RA EKF+P++GFK STY++WWIQQ++F+
Sbjct:   37 LSSKLMRLPTIEEWAAACGGTATDFVEMVMTSREAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASWWIQQAVFR 137          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.220e-30
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 1
Query:    7 YTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
            + + R  L  QLGR PT +E A + G+        L  G+ AKK M+ +N+R+VISIA++Y+  G+ LTDLIQEGSLGL+RAVEKFDPE+GFK STYS WWI+Q+I + 
Sbjct:  191 WEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRA 299          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA_pol_sigma70 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC7_9STRA)

HSP 1 Score: 118 bits (296), Expect = 8.940e-30
Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 1
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSA---FEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
            M     R QL   L R PT  E A+ACG        F ++ RE   AK  MV +NMR+VI++A++Y   GVPL+DL+QEGSLGLIRA EK+DP++GF+ STY+AWWIQQ+I+K 
Sbjct:   77 MAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKA 190          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA_pol_sigma70 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.190e-29
Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 1
Query:   19 RQQLGVQLGRAPTRKESAKACGVTVS---AFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
            R QL V L R PT  E A+ACG T      F  +  +   AK  MV +NMR+VI++A++Y   GVPL+DL+QEGSLGLIRA EK+DP +GFK STY+AWWIQQ+IFK 
Sbjct:  105 RDQLEVALRRQPTDSEWAEACGYTREHRELFRAAYTDCLHAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPAKGFKFSTYAAWWIQQAIFKA 212          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: Cyanobacteria-specific (RpoD-like sigma factor,type-3 @ Group 2 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 0005 TaxID=423472 RepID=T2J1T0_CROWT)

HSP 1 Score: 113 bits (282), Expect = 4.090e-29
Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
            M + E +++L  +LG+ PT KE +K   +   A  ++L +GE AK+ M+EAN+R+V++IA+KY+   +   DLIQEGSLGL R VEKFDP +G+K STY+ WWI+Q+I + 
Sbjct:   49 MNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRA 159          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA (polymerase sigma factor, cyanobacterial RpoD-like family n=2 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SR03_9SYNE)

HSP 1 Score: 116 bits (290), Expect = 4.160e-29
Identity = 54/111 (48.65%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
            M Y  T++ L  Q  R PT++E A+A G+  +A  ++L++G  AK+ M+EAN+R+V+S+A+KY+   + L DL+QEG+LGL RAV+KFDP +GFK STY+ WWI+Q+I + 
Sbjct:   55 MGYITTQETLSEQFDRLPTQEEWAQAVGLEPNALNDALKQGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRA 165          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA (polymerase sigma factor, RpoD/SigA family n=3 Tax=Thermosynechococcus TaxID=146785 RepID=A0A3B7MI62_9CYAN)

HSP 1 Score: 115 bits (289), Expect = 5.150e-29
Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
            M   E R+ L  +LGR PT +E A AC +T +     L+ GE AK+ M+EAN+R+V+S+A+KY+   + L DL+QEG+LGL R VEKFDP RG+K STY+ WWI+Q+I + 
Sbjct:   49 MALREKREALTKELGREPTFEEWAAACNLTPTELRNLLKRGERAKQKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRA 159          
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RpoS, (RNA polymerase nonessential primary sigma factor n=1 Tax=Nostoc sphaeroides CCNUC1 TaxID=2653204 RepID=A0A5P8WJ03_9NOSO)

HSP 1 Score: 110 bits (274), Expect = 7.700e-29
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
            M   E R  L +QL R PT +E A + G +    E  L +GE AK+ MV AN+R+V++IA+KY++  +   DLIQEG+LGL R VEKFDP +G+KLSTY+ WW+ QSI + 
Sbjct:    1 MAIEEQRSSLALQLNRQPTARELATSLGQSEGEVELILYQGERAKQKMVTANLRLVVAIAKKYQNRNLEFLDLIQEGTLGLYRGVEKFDPNKGYKLSTYAYWWVTQSITRA 111          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
RNA3.160e-4775.00polymerase, sigma 70 subunit, RpoD subfamily n=1 T... [more]
RNA_pol_sigma705.000e-4475.45domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Predicted1.630e-3057.43protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Hypothetical3.220e-3054.13protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
RNA_pol_sigma708.940e-3052.63domain-containing protein n=1 Tax=Tribonema minus ... [more]
RNA_pol_sigma703.190e-2956.48domain-containing protein n=1 Tax=Tribonema minus ... [more]
Cyanobacteria-specific4.090e-2947.75RpoD-like sigma factor,type-3 @ Group 2 RNA polyme... [more]
RNA4.160e-2948.65polymerase sigma factor, cyanobacterial RpoD-like ... [more]
RNA5.150e-2950.45polymerase sigma factor, RpoD/SigA family n=3 Tax=... [more]
RpoS,7.700e-2949.55RNA polymerase nonessential primary sigma factor n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7606contigH-canaliculatus_M_contigs7606:3396..5149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr9312
PFAMsSigma70_r2,Sigma70_r3,Sigma70_r4
Model size336
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.68e-31
EggNOG OGsCOG0568@1|root,2QV7Q@2759|Eukaryota,2XE8Y@2836|Bacillariophyta
Ec32 ortholog descriptionRNA polymerase sigma-70
Ec32 orthologEc-10_002800.1
DescriptionSigma-70 region 3
Cds size336
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854098.3910801-CDS-H-canaliculatus_M_contigs7606:3395..35001696854098.3910801-CDS-H-canaliculatus_M_contigs7606:3395..3500Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7606 3396..3500 +
1696854098.405524-CDS-H-canaliculatus_M_contigs7606:4353..44731696854098.405524-CDS-H-canaliculatus_M_contigs7606:4353..4473Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7606 4354..4473 +
1696854098.4246092-CDS-H-canaliculatus_M_contigs7606:5038..51491696854098.4246092-CDS-H-canaliculatus_M_contigs7606:5038..5149Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7606 5039..5149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7606.1.1prot_H-canaliculatus_M_contigs7606.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7606 3396..5149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7606.1.1

>prot_H-canaliculatus_M_contigs7606.1.1 ID=prot_H-canaliculatus_M_contigs7606.1.1|Name=mRNA_H-canaliculatus_M_contigs7606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp
MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVE
ANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYS
AWWIQQSIFKVR
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mRNA from alignment at H-canaliculatus_M_contigs7606:3396..5149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7606.1.1 ID=mRNA_H-canaliculatus_M_contigs7606.1.1|Name=mRNA_H-canaliculatus_M_contigs7606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1754bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7606:3396..5149+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGGTACACGGAGACGCGGCAGCAGCTCGGGGTGCAGCTGGGCAGGGC GCCGACGCGGAAGGAGTCGGCGAAAGCTTGCGGCGTGACGGTTTCGGCGT TCGAGGTGGGGGAGGCATGCGAGCGTGAGCGTTACGGCGCATCTCTTCAT GGCGTACGAGAGGTTTCGCGCACTTGCTTGCGGCACTTTTGACTCGCAAA ACCTCCGCCGTTAGCACCGGAGCTGAGTGTGCATGGCACGCCGTGGGACG GTGGTGTGTGGATCTTGCCATCACCGGTGTGCTGTCGCGTTGCGCGATCT TGTCGTCGCGCCTTGCCCCGGATTTGTTGCACGTCTACGGGGGCGTGCGT TTGCGGATCAACGTGGGACTTTCGTTCGATCGGTTTAGTTGGTAGGAAAC CTCAAACGACCACCGTTCCCGACCTCGAATGTTCAGTGTTTGAGTGAGAA GGGTTTGGGGTGATGCCGCAGGATTTTGTCTCACACCGGGTGCTGGGTGC CCCATTTTGAGTAGACTGCGGCGGAAAGACGGACTTGGGTAGAAAAATTC CGTGGAATTACGCCCAGCTCAGAGATGAAGGCCTCTCGTGAAGCAGGCTG CCGCTCACGGTCGGTGCGACTCTCGGTGTTCGCAGCACCGAGAAAAGACA AGTAAGACTTGCGAAACAATCGAAAAGGAAACGTTCATGAAATAATGGGC GCGCGGGTGACACGGTTTGCCGAGAGGGGGAGAGCGTTCGTGACACAAAC GAGGAAGTGCGGACCGACGGTGACCGATGGTGAGGGCGGAGATAGCGATG ATGGCGATGATGGCGCGTTTACGTTTGATAGTGATGATGATGATGATGAT GATGATGATGATGATGATGATGATGATTGTCGTGATTTTGTCTATTTTCG TGCTGACGATGGTGGTGATGGTGGTGATGGCGGCGTTGGCGGCGTTGGCG ATGAACAGGAGAGCCTGAGAGAGGGCGAGGAGGCGAAGAAGACGATGGTG GAGGCTAACATGCGCATGGTGATCTCAATCGCCAGGAAGTACCGGCACTA CGGGGTGCCCCTCACGGACCTTATCCAGGTACTCGCGCAGCTGTGCAGTG TTTTGCTGCTTTGTGGGTGCCTTCGGACTCGAGAGAGAGAGATGGACGGA GTTTCACAACTTTTTTCTGTTTACGTTATTTTACCCTACAACACCTGCAC AATGAACCCTCGCCGTTGGGAACTCGACAGAAACCTCTAGGTACGTGGCA CGTGACATTCCTCAGGAGGTGTGCTTGCGGTGTTGTTATGTCTTTCTTTT TTAAAAGGCGGAGGGAAAGGGAAAGGGCAGGCAGGGGTAGGCAGAGTCAG GACAGGAGAGAACCAGCACGCGCACGCGTCGAAACGCAGATATCAAAGGC GGCGTGTGTGCCGGACGAGTGGTCTCGTCTCGTGCGCGTTCCTCTCGACG CCTCGGCCCACTGGCCCAAGACCGGGCTCCTCCACGCTTTTCTTCTTCCA GCTCTTTTATCGTCGTGGATGATCGTTGTCTCGTCCCCCCCCCGGCGCAC GCACGCATTCACCCCTCCCAACCGCCTCGTCTGCGCCACGCTCGTGCTAT TCCGATCGTTTCGTGCCCTGATCTGTCTCATATCGGATCGCAGGAGGGGT CTCTCGGCCTGATCCGAGCGGTGGAAAAGTTCGACCCGGAGAGGGGCTTC AAGCTGAGCACCTACTCGGCGTGGTGGATACAGCAGTCGATATTTAAGGT GAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7606:3396..5149+

>mRNA_H-canaliculatus_M_contigs7606.1.1 ID=mRNA_H-canaliculatus_M_contigs7606.1.1|Name=mRNA_H-canaliculatus_M_contigs7606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7606:3396..5149+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGGTACACGGAGACGCGGCAGCAGCTCGGGGTGCAGCTGGGCAGGGC
GCCGACGCGGAAGGAGTCGGCGAAAGCTTGCGGCGTGACGGTTTCGGCGT
TCGAGGAGAGCCTGAGAGAGGGCGAGGAGGCGAAGAAGACGATGGTGGAG
GCTAACATGCGCATGGTGATCTCAATCGCCAGGAAGTACCGGCACTACGG
GGTGCCCCTCACGGACCTTATCCAGGAGGGGTCTCTCGGCCTGATCCGAG
CGGTGGAAAAGTTCGACCCGGAGAGGGGCTTCAAGCTGAGCACCTACTCG
GCGTGGTGGATACAGCAGTCGATATTTAAGGTGAGG
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