mRNA_H-canaliculatus_M_contigs7606.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA (polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM6_ECTSI) HSP 1 Score: 160 bits (405), Expect = 3.160e-47 Identity = 84/112 (75.00%), Postives = 93/112 (83.04%), Query Frame = 1
Query: 1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKVR 336
M + RQ+L LGRAPT E A++ +TV EESL+ G AKKTMVEANMRMVISIARKY+H GVPLTDLIQEGSLGL+RAVEKFDPERGFKLSTYSAWWIQQ+IFKVR
Sbjct: 39 MGHVGARQELAAGLGRAPTFSEWAESRRMTVVELEESLKVGGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFKVR 150
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA_pol_sigma70 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBV0_9PHAE) HSP 1 Score: 160 bits (405), Expect = 5.000e-44 Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 1
Query: 1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFK 330
M + TRQ+L +LGRAPT E A++C TV EESL+ AKKTMVEANMRMVISIARKY+H GVPLTDLIQEGSLGL+RAVEKFDPERGFKLSTYSAWWIQQ+IFK
Sbjct: 297 MGHVGTRQELAARLGRAPTFSEWAESCRTTVVELEESLKVCGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFK 406
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPT1_PHATC) HSP 1 Score: 119 bits (299), Expect = 1.630e-30 Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1
Query: 28 LGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFK 330
L +L R PT +E A ACG T + F E + EAK+ MV++NMR+V+SIARKY + GV L DL+QEGSLGL RA EKF+P++GFK STY++WWIQQ++F+
Sbjct: 37 LSSKLMRLPTIEEWAAACGGTATDFVEMVMTSREAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASWWIQQAVFR 137
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA) HSP 1 Score: 121 bits (304), Expect = 3.220e-30 Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 1
Query: 7 YTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
+ + R L QLGR PT +E A + G+ L G+ AKK M+ +N+R+VISIA++Y+ G+ LTDLIQEGSLGL+RAVEKFDPE+GFK STYS WWI+Q+I +
Sbjct: 191 WEDVRDGLKDQLGRPPTLEEWASSVGMQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRA 299
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA_pol_sigma70 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC7_9STRA) HSP 1 Score: 118 bits (296), Expect = 8.940e-30 Identity = 60/114 (52.63%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSA---FEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
M R QL L R PT E A+ACG F ++ RE AK MV +NMR+VI++A++Y GVPL+DL+QEGSLGLIRA EK+DP++GF+ STY+AWWIQQ+I+K
Sbjct: 77 MAMESLRDQLQAALRRPPTDDEWAEACGYPADQRRLFRDAYRERLRAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKA 190
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA_pol_sigma70 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH6_9STRA) HSP 1 Score: 117 bits (293), Expect = 3.190e-29 Identity = 61/108 (56.48%), Postives = 76/108 (70.37%), Query Frame = 1
Query: 19 RQQLGVQLGRAPTRKESAKACGVTVS---AFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
R QL V L R PT E A+ACG T F + + AK MV +NMR+VI++A++Y GVPL+DL+QEGSLGLIRA EK+DP +GFK STY+AWWIQQ+IFK
Sbjct: 105 RDQLEVALRRQPTDSEWAEACGYTREHRELFRAAYTDCLHAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPAKGFKFSTYAAWWIQQAIFKA 212
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: Cyanobacteria-specific (RpoD-like sigma factor,type-3 @ Group 2 RNA polymerase sigma factor n=1 Tax=Crocosphaera watsonii WH 0005 TaxID=423472 RepID=T2J1T0_CROWT) HSP 1 Score: 113 bits (282), Expect = 4.090e-29 Identity = 53/111 (47.75%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
M + E +++L +LG+ PT KE +K + A ++L +GE AK+ M+EAN+R+V++IA+KY+ + DLIQEGSLGL R VEKFDP +G+K STY+ WWI+Q+I +
Sbjct: 49 MNFLEKKEELADKLGKEPTVKEWSKELEIEQKALNQALEQGERAKRKMIEANLRLVVAIAKKYQKRNMEFLDLIQEGSLGLERGVEKFDPTKGYKFSTYAYWWIRQAITRA 159
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA (polymerase sigma factor, cyanobacterial RpoD-like family n=2 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SR03_9SYNE) HSP 1 Score: 116 bits (290), Expect = 4.160e-29 Identity = 54/111 (48.65%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
M Y T++ L Q R PT++E A+A G+ +A ++L++G AK+ M+EAN+R+V+S+A+KY+ + L DL+QEG+LGL RAV+KFDP +GFK STY+ WWI+Q+I +
Sbjct: 55 MGYITTQETLSEQFDRLPTQEEWAQAVGLEPNALNDALKQGTRAKRKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERAVDKFDPTKGFKFSTYAYWWIRQAITRA 165
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RNA (polymerase sigma factor, RpoD/SigA family n=3 Tax=Thermosynechococcus TaxID=146785 RepID=A0A3B7MI62_9CYAN) HSP 1 Score: 115 bits (289), Expect = 5.150e-29 Identity = 56/111 (50.45%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
M E R+ L +LGR PT +E A AC +T + L+ GE AK+ M+EAN+R+V+S+A+KY+ + L DL+QEG+LGL R VEKFDP RG+K STY+ WWI+Q+I +
Sbjct: 49 MALREKREALTKELGREPTFEEWAAACNLTPTELRNLLKRGERAKQKMIEANLRLVVSVAKKYQKRNLELLDLVQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRA 159
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Match: RpoS, (RNA polymerase nonessential primary sigma factor n=1 Tax=Nostoc sphaeroides CCNUC1 TaxID=2653204 RepID=A0A5P8WJ03_9NOSO) HSP 1 Score: 110 bits (274), Expect = 7.700e-29 Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query: 1 MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEANMRMVISIARKYRHYGVPLTDLIQEGSLGLIRAVEKFDPERGFKLSTYSAWWIQQSIFKV 333
M E R L +QL R PT +E A + G + E L +GE AK+ MV AN+R+V++IA+KY++ + DLIQEG+LGL R VEKFDP +G+KLSTY+ WW+ QSI +
Sbjct: 1 MAIEEQRSSLALQLNRQPTARELATSLGQSEGEVELILYQGERAKQKMVTANLRLVVAIAKKYQNRNLEFLDLIQEGTLGLYRGVEKFDPNKGYKLSTYAYWWVTQSITRA 111 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7606.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7606.1.1 >prot_H-canaliculatus_M_contigs7606.1.1 ID=prot_H-canaliculatus_M_contigs7606.1.1|Name=mRNA_H-canaliculatus_M_contigs7606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=112bp MRYTETRQQLGVQLGRAPTRKESAKACGVTVSAFEESLREGEEAKKTMVEback to top mRNA from alignment at H-canaliculatus_M_contigs7606:3396..5149+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7606.1.1 ID=mRNA_H-canaliculatus_M_contigs7606.1.1|Name=mRNA_H-canaliculatus_M_contigs7606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1754bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7606:3396..5149+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7606:3396..5149+ >mRNA_H-canaliculatus_M_contigs7606.1.1 ID=mRNA_H-canaliculatus_M_contigs7606.1.1|Name=mRNA_H-canaliculatus_M_contigs7606.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=336bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7606:3396..5149+ (Hapterophycus canaliculatus Oshoro7m male)back to top |