mRNA_H-canaliculatus_M_contigs7605.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7605.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7605.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7605.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.130e-23
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 1 
Query:    1 VDEVRHWMTLALAARSDSEGACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQ 162
            VDEVRHWMTLALAAR  +E ACR+LALVGPPGSAKSTMVRLLAQDMDVELAEWQ
Sbjct:   62 VDEVRHWMTLALAARPGNEEACRVLALVGPPGSAKSTMVRLLAQDMDVELAEWQ 115
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BLAST of mRNA_H-canaliculatus_M_contigs7605.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B398_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 2.280e-5
Identity = 24/54 (44.44%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 VDEVRHWMTLALAA-RSDSEGACRLLALVGPPGSAKSTMVRLLAQDMDVELAEW 159
            VDE+R W+ LA A+ +       R+L L GPPGS KS+M+R+L+ ++  E+ EW
Sbjct:   66 VDEIRQWLRLADASLQLGLPPTPRMLVLSGPPGSGKSSMIRVLSHELGFEVCEW 119
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BLAST of mRNA_H-canaliculatus_M_contigs7605.1.1 vs.
Match: Cell (cycle checkpoint protein RAD17 n=1 Tax=Ophiocordyceps camponoti-floridani TaxID=2030778 RepID=A0A8H4Q0Y0_9HYPO)

HSP 1 Score: 48.5 bits (114), Expect = 4.290e-5
Identity = 27/54 (50.00%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:    1 VDEVRHWMTLALAARSDSEGACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQ 162
            V +VR W+    A R       RLL L G  GS K+T VRLLAQDM +EL EW+
Sbjct:  199 VSDVRRWLEAVTAGRIRQ----RLLVLKGAAGSGKTTTVRLLAQDMGLELLEWK 248
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BLAST of mRNA_H-canaliculatus_M_contigs7605.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ophiocordyceps camponoti-rufipedis TaxID=2004952 RepID=A0A2C5YWX4_9HYPO)

HSP 1 Score: 48.5 bits (114), Expect = 4.300e-5
Identity = 27/54 (50.00%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:    1 VDEVRHWMTLALAARSDSEGACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQ 162
            V +VR W+    A R       RLL L G  GS K+T VRLLAQDM +EL EW+
Sbjct:  560 VSDVRRWLEAVTAGRIRQ----RLLVLKGAAGSGKTTTVRLLAQDMGLELLEWK 609
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7605.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized3.130e-2390.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.280e-544.44protein n=2 Tax=Haptolina ericina TaxID=156174 Rep... [more]
Cell4.290e-550.00cycle checkpoint protein RAD17 n=1 Tax=Ophiocordyc... [more]
Uncharacterized4.300e-550.00protein n=1 Tax=Ophiocordyceps camponoti-rufipedis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7605contigH-canaliculatus_M_contigs7605:534..695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog209285.XP_006690854.1
Preferred namerad17
PFAMsRad17
Model size162
Max annot lvl4751|Fungi
KEGG koko:K06662
KEGG Pathwayko04111,ko04113,map04111,map04113
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000075,GO:0000076,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000723,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003682,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007095,GO:0007127,GO:0007131,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0017076,GO:0022402,GO:0022414,GO:0030554,GO:0031389,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032200,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033314,GO:0033554,GO:0034641,GO:0035639,GO:0035825,GO:0036094,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060249,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0140013,GO:1901265,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:1990421
Exons1
Evalue0.000573
EggNOG OGsCOG0470@1|root,KOG1970@2759|Eukaryota,39UQ0@33154|Opisthokonta,3NWWG@4751|Fungi,3QRID@4890|Ascomycota,214YN@147550|Sordariomycetes,3U7GN@5139|Sordariales,3HBUG@35718|Chaetomiaceae
DescriptionRad17 cell cycle checkpoint protein
Cds size141
COG categoryDL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854098.3023102-CDS-H-canaliculatus_M_contigs7605:533..6741696854098.3023102-CDS-H-canaliculatus_M_contigs7605:533..674Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7605 534..674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854098.3221633-UTR-H-canaliculatus_M_contigs7605:674..6951696854098.3221633-UTR-H-canaliculatus_M_contigs7605:674..695Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs7605 675..695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7605.1.1prot_H-canaliculatus_M_contigs7605.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7605 534..674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7605.1.1

>prot_H-canaliculatus_M_contigs7605.1.1 ID=prot_H-canaliculatus_M_contigs7605.1.1|Name=mRNA_H-canaliculatus_M_contigs7605.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=47bp
MTLALAARSDSEGACRLLALVGPPGSAKSTMVRLLAQDMDVELAEWQ
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mRNA from alignment at H-canaliculatus_M_contigs7605:534..695-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7605.1.1 ID=mRNA_H-canaliculatus_M_contigs7605.1.1|Name=mRNA_H-canaliculatus_M_contigs7605.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=162bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7605:534..695- (Hapterophycus canaliculatus Oshoro7m male)
GTCGACGAAGTGCGGCACTGGATGACGCTGGCCCTCGCCGCTCGTTCCGA
TAGCGAGGGAGCCTGTCGCCTCCTGGCTCTTGTGGGACCCCCGGGCTCGG
CAAAGTCGACCATGGTCAGGCTGCTAGCGCAAGACATGGACGTCGAACTC
GCGGAGTGGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7605:534..695-

>mRNA_H-canaliculatus_M_contigs7605.1.1 ID=mRNA_H-canaliculatus_M_contigs7605.1.1|Name=mRNA_H-canaliculatus_M_contigs7605.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=141bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7605:534..695- (Hapterophycus canaliculatus Oshoro7m male)
ATGACGCTGGCCCTCGCCGCTCGTTCCGATAGCGAGGGAGCCTGTCGCCT
CCTGGCTCTTGTGGGACCCCCGGGCTCGGCAAAGTCGACCATGGTCAGGC
TGCTAGCGCAAGACATGGACGTCGAACTCGCGGAGTGGCAG
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