mRNA_H-canaliculatus_M_contigs76004.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP2_ECTSI) HSP 1 Score: 105 bits (263), Expect = 5.580e-27 Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGLA 159
GGVL+GGLHAVSGPDHLAALLPRIMGQKWH SMRIGATWGLGHGFSAT IGLA
Sbjct: 8 GGVLAGGLHAVSGPDHLAALLPRIMGQKWHKSMRIGATWGLGHGFSATVIGLA 60
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB1_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.060e-22 Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGLA 159
GGVL+GGLHA+SGPDHLAALLPRIMG+ W +MRIGA WGLGHGFSAT IGLA
Sbjct: 3 GGVLAGGLHAISGPDHLAALLPRIMGKAWPVAMRIGAVWGLGHGFSATLIGLA 55
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BWD9_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 5.430e-19 Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGLA 159
GG L+G LHAVSGPDH+AA+LPR +GQKW + IGATW GHG SATF+GLA
Sbjct: 70 GGTLAGALHAVSGPDHIAAVLPRCIGQKWWRASEIGATWAFGHGLSATFLGLA 122
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLK4_THAOC) HSP 1 Score: 84.7 bits (208), Expect = 2.460e-18 Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGLA 159
GGV SG LHA++GPDHLAAL+PR G KW+++ R+GA WGLGHGFSAT +G+A
Sbjct: 83 GGVFSGSLHAIAGPDHLAALIPRCCGLKWYSAARVGAIWGLGHGFSATLLGMA 135
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D180_CYCTE) HSP 1 Score: 83.6 bits (205), Expect = 2.970e-18 Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGL 156
GG +GGLHA+SGPDHLAALLPR +GQ+W+ S R+GA WG+GHG SAT +G+
Sbjct: 98 GGFAAGGLHAISGPDHLAALLPRCVGQRWYKSFRVGALWGMGHGVSATILGV 149
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q4K0_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 6.050e-18 Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGL 156
GGVL G LHA++GPDHLAALLPR GQ+W+ + RIGA WG+GHG SAT +GL
Sbjct: 84 GGVLGGALHAIAGPDHLAALLPRCCGQRWYQAGRIGALWGMGHGVSATILGL 135
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7J2_FISSO) HSP 1 Score: 83.2 bits (204), Expect = 7.980e-18 Identity = 34/52 (65.38%), Postives = 45/52 (86.54%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGL 156
GG+ +GGLHA++GPDHLAALLPR GQ+W+ ++R+GA WG+GHG SAT +GL
Sbjct: 72 GGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAVRVGALWGMGHGLSATVLGL 123
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DEM4_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 9.320e-18 Identity = 35/52 (67.31%), Postives = 45/52 (86.54%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGL 156
GG+L+G LHAV+GPDHLAALLPR +G++W+ +MRIGA WGLGHG SA +G+
Sbjct: 15 GGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGM 66
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7I3_PHATC) HSP 1 Score: 82.8 bits (203), Expect = 1.290e-17 Identity = 35/53 (66.04%), Postives = 45/53 (84.91%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGLA 159
GG+ +GGLHA++GPDHLAALLPR GQ+W+ + R+GA WG+GHG SAT IG+A
Sbjct: 87 GGLFAGGLHAIAGPDHLAALLPRCCGQRWYRAGRVGALWGMGHGVSATIIGVA 139
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YH60_HETAK) HSP 1 Score: 80.5 bits (197), Expect = 1.580e-17 Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 1 GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIGLA 159
GGVL+GGLHAVSGPDHLAALLPR +GQ+W + + GA WGLGHG S +GLA
Sbjct: 95 GGVLAGGLHAVSGPDHLAALLPRCIGQRWFPAAQTGALWGLGHGLSGMALGLA 147 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76004.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs76004.1.1 >prot_H-canaliculatus_M_contigs76004.1.1 ID=prot_H-canaliculatus_M_contigs76004.1.1|Name=mRNA_H-canaliculatus_M_contigs76004.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=53bp GGVLSGGLHAVSGPDHLAALLPRIMGQKWHNSMRIGATWGLGHGFSATFIback to top mRNA from alignment at H-canaliculatus_M_contigs76004:355..513+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs76004.1.1 ID=mRNA_H-canaliculatus_M_contigs76004.1.1|Name=mRNA_H-canaliculatus_M_contigs76004.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=159bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76004:355..513+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76004:355..513+ >mRNA_H-canaliculatus_M_contigs76004.1.1 ID=mRNA_H-canaliculatus_M_contigs76004.1.1|Name=mRNA_H-canaliculatus_M_contigs76004.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=159bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76004:355..513+ (Hapterophycus canaliculatus Oshoro7m male)back to top |