mRNA_H-canaliculatus_M_contigs75965.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs75965.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs75965.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D3_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.500e-33
Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = 1

Query:    4 PASRGGAKYVFLILDDFSDTGWPLLLKDKSADTRLK------ISVDELPGTF------RSDNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPEE 450
            P S GGA+Y  +++DD+S+ GW L L DK   T         +   +L GT       R DNG+EF N  FR LL E  V  +   VDG +RNG+ ER+I ++    +AA+L+FP LFP +  PR A  +   WP+A  W ++  N TA+ H PDK CP E
Sbjct:   86 PPSTGGARYCMMVVDDYSNVGWTLFLADKGGSTLCDAFRAWYVDTKQLAGTHGGLGVARFDNGTEFTNTEFRHLLSELGVAVEFTPVDGAKRNGRAERKIALVVEGGKAAWLEFPRLFPDLEFPRKAMAWTTIWPKALAWMNDTLNMTAQAHTPDKLCPWE 246

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 3.280e-33
Identity = 68/158 (43.04%), Postives = 92/158 (58.23%), Query Frame = 1

Query:   10 SRGGAKYVFLILDDFSDTGWPLLLKDKS------------ADTRLKISVDELPGTFRSDNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPE 447
            S GGAKYV  ILD  ++ GW   L++KS            A  +  ++     G   +DNG+E+ N  FR LL E  +T +L +VDGP+ NG+VERRI ++    +AAFL+FP LFPGV+ P  A  + A WPEA+ W ++  N  A V   DKRCPE
Sbjct:  254 SSGGAKYVMQILDHHTNYGWICFLREKSSTNVVAAFRAWYASIKSLLATHGGLGCVLTDNGTEWVNAEFRGLLAELNITRELTAVDGPKSNGRVERRIALVMEGGKAAFLEFPKLFPGVMFPTKALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPE 411

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 6.570e-33
Identity = 68/158 (43.04%), Postives = 91/158 (57.59%), Query Frame = 1

Query:   10 SRGGAKYVFLILDDFSDTGWPLLLKDKS------------ADTRLKISVDELPGTFRSDNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPE 447
            S GGAKYV  ILD  ++ GW   L++KS            A  +  ++     G   +DNG+E+ N  FR LL E  +T +L +VDGP+ NG+VERRI ++    +AAFL+FP LFPGV  P  A  + A WPEA+ W ++  N  A V   DKRCPE
Sbjct:  890 SSGGAKYVMQILDHHTNYGWICFLREKSSTNVVAAFRAWYASIKSLLATHGGLGCVLTDNGTEWVNAEFRGLLAELNITRELTAVDGPKSNGRVERRIALVMEGGKAAFLEFPKLFPGVTFPTKALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPE 1047

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 9.020e-33
Identity = 68/158 (43.04%), Postives = 90/158 (56.96%), Query Frame = 1

Query:   10 SRGGAKYVFLILDDFSDTGWPLLLKDKS------------ADTRLKISVDELPGTFRSDNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPE 447
            S GGAKYV  ILD  +  GW   L++KS            A  +  ++     G   +DNG+E+ N  FR LL E  +T +L +VDGP+ NG+VERRI ++    +AAFL+FP LFPGV  P  A  + A WPEA+ W ++  N  A V   DKRCPE
Sbjct:  760 SSGGAKYVMQILDHHTSYGWICFLREKSSTNVVAAFRAWYASIKSLLATHGGLGCVLTDNGTEWVNAEFRGLLAELNITRELTAVDGPKSNGRVERRIALVMEGGKAAFLEFPKLFPGVTFPTKALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPE 917

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Integrase (catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H9_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.140e-32
Identity = 66/161 (40.99%), Postives = 88/161 (54.66%), Query Frame = 1

Query:    4 PASRGGAKYVFLILDDFSDTGWPLLLKDKSADTRLK------ISVDELPGTF------RSDNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPEE 450
            P S GGA+Y  +++DD+S+ GW L L DK   T         +   +L GT       R DNG+EF N  FR LL E  V  +   VDG +RNG+ ER+I ++    +AA+L+FP LFP +  PR A      WPEA  W ++    TA+ H PDK CP E
Sbjct:  277 PPSTGGARYCMMVVDDYSNVGWTLFLADKGGSTLCDAFRAWYVDTKQLAGTHGGLGVARFDNGTEFTNTEFRHLLSELGVAVEFTPVDGAKRNGRAERKIALVVEGGKAAWLEFPRLFPDLEFPRKAMAGTTIWPEALAWMNDTLTMTAQAHTPDKLCPWE 437

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM3_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.410e-31
Identity = 69/159 (43.40%), Postives = 92/159 (57.86%), Query Frame = 1

Query:   10 SRGGAKY-VFLILDDFSDTGWPLLLKDKSADTRLKI------SVDELPGTFRS------DNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPE 447
            S GGAKY V  ILD  ++ GW   L++KS+   +        S+  L  T         DNG+E+ N  FR LL E  +T +L +VDGP+ NG+VERRI ++    +AAFL+FP LFPGV+ P  A  + A WPEA+ W ++  N  A V   DKRCPE
Sbjct:  574 SSGGAKYYVMQILDHHTNYGWICFLREKSSTNVVAAFRAWYASIKSLVATHGGLGCVLIDNGTEWVNAEFRGLLAELNITRELTAVDGPKSNGRVERRIALVMEGGKAAFLEFPKLFPGVMFPTKALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPE 732

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN93_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.920e-31
Identity = 65/158 (41.14%), Postives = 89/158 (56.33%), Query Frame = 1

Query:   10 SRGGAKYVFLILDDFSDTGWPLLLKDKS------------ADTRLKISVDELPGTFRSDNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPE 447
            S GG KYV  ILD  ++ GW   L+DKS            A  +  ++     G   +DN +E+ N  FR LL E  +T +L +VDGP+ NG+VE RI ++ +  +AAF++FP LFPGV  P  A  + A WPEA+ W ++  N  A V   DKRCPE
Sbjct:  504 SSGGTKYVIQILDHETNYGWVCCLRDKSGTNVVAAYRAWYASIKSLLATHGRLGCVMTDNSTEWVNAEFRGLLAELNITRELTAVDGPKSNGRVEWRIALMMVGGKAAFVEFPKLFPGVTFPTKALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPE 661

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAQ1_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.230e-30
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = 1

Query:   10 SRGGAKYVFLILDDFSDTGWPLLLKDKS------------ADTRLKISVDELPGTFRSDNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPE 447
            S GGAKYV  ILD  ++ GW   L++K+            A  +  ++     G   +DNG+E+ N  FR LL +  +  +L +VDGP+ +G+VERRI ++    +AAFL+FP LFPGV+ P  A  + A WPEA+ W ++  N  A V   DKRCPE
Sbjct:   10 SSGGAKYVMQILDHHTNYGWICFLREKTGTNVVAAFRAWYASIKSLLATHGGLGCVLTDNGTEWVNAEFRGLLAKLNIARELTAVDGPKSHGRVERRITLVMKGGKAAFLEFPKLFPGVMFPTKALSFRAIWPEAFAWMNDSLNIAAEVSKEDKRCPE 167

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.090e-29
Identity = 65/158 (41.14%), Postives = 88/158 (55.70%), Query Frame = 1

Query:   10 SRGGAKYVFLILDDFSDTGWPLLLKDKS------------ADTRLKISVDELPGTFRSDNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPE 447
            S GGAKYV  ILD  ++ GW   L++KS            A  +  ++     G   +DNG+E+ N  FR LL E  +  +L +VDGP+ N +VERRI ++ +  +AAFLDFP LFPGV     A  + A WPEA+ W ++  N  A V    KRCPE
Sbjct:  890 SSGGAKYVMQILDHHTNYGWICFLREKSSTNVVAAFRAWYASIKSLLATHGGLGCVLTDNGTEWVNAEFRGLLAELNIMRELTAVDGPKSNCRVERRIALVMVGGKAAFLDFPKLFPGVTFRTKALSFRAIWPEAFAWMNDTLNIAAEVSKEGKRCPE 1047

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 9.220e-29
Identity = 64/158 (40.51%), Postives = 89/158 (56.33%), Query Frame = 1

Query:   10 SRGGAKYVFLILDDFSDTGWPLLLKDKS------------ADTRLKISVDELPGTFRSDNGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAFLDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPE 447
            S GGAKYV  ILD  ++ GW   L+++S            A  +  ++     G   +DNG+E+ N  FR LL E  +T +L +VDGP+ NG+VERRI ++    +AAFL+ P LFPGV+    A  + A WPEA+   ++  N  A V   DKRCPE
Sbjct:  673 SSGGAKYVMQILDHHTNYGWICFLREESGTNVVAAFRAWYASIKSLLATHGGLGCVLTDNGTEWVNAEFRGLLAELNITRELTAVDGPKSNGRVERRIALVMEGGKAAFLELPKLFPGVMFSTKALSFRAIWPEAFASMNDSLNIAAEVSKEDKRCPE 830

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs75965.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Integrase	1.500e-33	40.99	catalytic domain-containing protein n=1 Tax=Ectoca...	[more]
Integrase	3.280e-33	43.04	catalytic domain-containing protein n=1 Tax=Ectoca...	[more]
Uncharacterized	6.570e-33	43.04	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Integrase	9.020e-33	43.04	catalytic domain-containing protein n=2 Tax=Ectoca...	[more]
Integrase	1.140e-32	40.99	catalytic domain-containing protein (Fragment) n=1...	[more]
Uncharacterized	3.410e-31	43.40	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	4.920e-31	41.14	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Integrase	1.230e-30	40.51	catalytic domain-containing protein n=1 Tax=Ectoca...	[more]
Uncharacterized	1.090e-29	41.14	protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	9.220e-29	40.51	protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs75965	contig	H-canaliculatus_M_contigs75965:2..502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	3711.Bra002340.1-P
PFAMs	RVT_2,Retrotran_gag_2,gag_pre-integrs,rve
Model size	450
Max annot lvl	35493\|Streptophyta
Hectar predicted targeting category	other localisation
Exons	2
Evalue	3.41e-10
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta
Description	Mitochondrial protein
Cds size	450
COG category	O

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854097.26668-CDS-H-canaliculatus_M_contigs75965:1..103	1696854097.26668-CDS-H-canaliculatus_M_contigs75965:1..103	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75965 2..103 +
1696854097.2848341-CDS-H-canaliculatus_M_contigs75965:154..502	1696854097.2848341-CDS-H-canaliculatus_M_contigs75965:154..502	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs75965 155..502 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs75965.1.1	prot_H-canaliculatus_M_contigs75965.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs75965 2..502 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs75965:2..502+
coding sequence from alignment at H-canaliculatus_M_contigs75965:2..502+

protein sequence of mRNA_H-canaliculatus_M_contigs75965.1.1

>prot_H-canaliculatus_M_contigs75965.1.1 ID=prot_H-canaliculatus_M_contigs75965.1.1|Name=mRNA_H-canaliculatus_M_contigs75965.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=150bp
MPASRGGAKYVFLILDDFSDTGWPLLLKDKSADTRLKISVDELPGTFRSD
NGSEFNNPVFRALLEEYKVTTQLPSVDGPERNGKVERRIGMIKLAARAAF
LDFPLLFPGVVVPRVAPDYDATWPEAWVWASEKFNCTARVHLPDKRCPEE

mRNA from alignment at H-canaliculatus_M_contigs75965:2..502+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs75965.1.1 ID=mRNA_H-canaliculatus_M_contigs75965.1.1|Name=mRNA_H-canaliculatus_M_contigs75965.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=501bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75965:2..502+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCCGGCGTCACGGGGTGGCGCAAAGTACGTCTTCCTCATCCTGGACGA
CTTCTCGGACACGGGGTGGCCGTTATTACTGAAGGATAAGTCGGCCGACA
CCGTTGCGCGCGCTTTTCAGGCATTCCTCACATCCATCAAGCCCCTGCGT
TAGCGGCTCAAGATCAGCGTGGACGAGCTGCCGGGGACTTTCCGCTCGGA
TAACGGCAGCGAGTTCAACAACCCGGTATTTCGCGCGCTCCTGGAGGAAT
ACAAGGTCACCACGCAGTTACCTTCTGTCGATGGCCCGGAGCGCAACGGG
AAGGTCGAGCGGCGCATCGGCATGATCAAGCTCGCGGCGCGCGCCGCTTT
TCTGGATTTTCCCCTTCTCTTCCCGGGAGTCGTCGTCCCGCGTGTGGCGC
CGGACTACGACGCGACGTGGCCGGAGGCGTGGGTGTGGGCGTCGGAGAAG
TTCAACTGCACGGCGCGTGTACACCTCCCGGACAAGCGCTGCCCGGAGGA
G

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs75965:2..502+

>mRNA_H-canaliculatus_M_contigs75965.1.1 ID=mRNA_H-canaliculatus_M_contigs75965.1.1|Name=mRNA_H-canaliculatus_M_contigs75965.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=450bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs75965:2..502+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCCGGCGTCACGGGGTGGCGCAAAGTACGTCTTCCTCATCCTGGACGA
CTTCTCGGACACGGGGTGGCCGTTATTACTGAAGGATAAGTCGGCCGACA
CCCGGCTCAAGATCAGCGTGGACGAGCTGCCGGGGACTTTCCGCTCGGAT
AACGGCAGCGAGTTCAACAACCCGGTATTTCGCGCGCTCCTGGAGGAATA
CAAGGTCACCACGCAGTTACCTTCTGTCGATGGCCCGGAGCGCAACGGGA
AGGTCGAGCGGCGCATCGGCATGATCAAGCTCGCGGCGCGCGCCGCTTTT
CTGGATTTTCCCCTTCTCTTCCCGGGAGTCGTCGTCCCGCGTGTGGCGCC
GGACTACGACGCGACGTGGCCGGAGGCGTGGGTGTGGGCGTCGGAGAAGT
TCAACTGCACGGCGCGTGTACACCTCCCGGACAAGCGCTGCCCGGAGGAG